Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   ----------->HVH21              --------->TOE2(2)             <---------ATHB12                          --------->PCF2    --------->MYB111(1)                  --------->MYB46(3)                --------->ANAC58    <---------MYB46(3)            <---------MYB46(3)    <---------ATHB12   --------->ANAC58        -- -ANAC58      --------->TOE1(2)  --------->ALFIN1<---------WRKY38(1)     ---------->DOF2           -- -ANAC58     --------->YAB1 <<<<<<<<<<<<<<<<<LFY <---------WRKY12     --------->WOX13(1)   <---------MYB52(2)   caagagtagttgcaaacatatgacacgatgaaacagtggttcaacaatcgttcaacgaatcaattgaatggtccatcaagctatagttgtcccactaact  20657800                                   <---------AHL20(2)                              --------->ATHB12                               <---------YAB1                                  <------MYB83                           <----------DOF2                                     <---------MYB46(3)                        <---------ARR11(3)                                     <------MYB46(1)                        <---------AHL20(1)          ----------->GT1        <-----------RAV1(1)  <----                        --------->AHL20(1)      <-----------GT1            <---------MYB46(3)   ----- <---------ARR11(3)     --------->ARR11(3) <---------AHL20(2)           <----------DOF2         <---- ------->ANAC58        --------->CCA1(1)   --------->AHL20(2)     --------->ARR14(2)            ----- ------->ANAC58        --------->RVE1(1) <----------DOF2          <---------ARR14(2)           ------   caagaaattccatattagtatctaaatatctttatttttaattcttttattaactggtaatagaggcaaatattcttttgttggtttattgaaagaattt  20657900                                    ------->TEIL                                  <---------ZAT14        --------->ANAC58          <---------ZAT18        --------->ANAC58          --------->ZAT18        --------->ANAC46         <---------ZAT6  <---------ANAC46          <------MYB83  <---------ANAC58         --------->MYB46(2)  <---------ANAC58         --------->MYB111(2) -----AHL20(1)             --------->MYB59 ---->AHL20(2)             --------->MYB111(1)                                     --------->AHL20(2) -----AHL20(2)            <---------MYB55(1)  <---------YAB1            --------->ANAC46 ---->AHL20(1) --------->ATHB12 <---------------AtSPL3    ----------->GT1    ---------->DOF2 --->AHL20(2) --------->ICU4<------MYB46(1)<---------MYB52(1)        --------->ZAT14        <--------   tatttcgtataagctactgattagcgagttaggtagtgtacctctgttatttttggttaatggttaatttgtatactcaaaaagattatatgttctgtat  20658000                               <---------AHL20(2)                         <------ZmHOX2a(1)         --------->ANAC46                                 -                        <----------ID1     <----------DOF2                                     <-----                <---------HSFB2a(2)     --------->GLK1(2)                                      ------                --------->HSFB2a(2)    <---------GLK1(2)    <---------ZAT14                   <------ -ANAC46   <----------DOF2     --------->AHL20(2)<-----------GT1<----------DOF2       <----------DOF2   agaaacatctatgcttttttagaaataggacaaaaaattgggattctttttatacgatagactatactttagagcatttgaaatgagtctttctcttctg  20658100                                                  --------->CCA1(2)                                               --------->ANAC58                                               --------->ANAC58                                              --------->SPL7                                              <---------TOE2(2)                       --------->WOX13(1)                                            --------->TOE1(2)            <----------DOF2      <------          <-----------GT1------------>CBF   <---------SPL7               ------>ZmHOX2a(1)    -------      <---------ZAT6    ------>ZmHOX2a(2)   --------->TOE2(2)          ------>ZmHOX2a(2) --------->YAB1 -------->MYB52(1)  <---------ZAT6    --------->AtMYB61     --------->ARR14(2)   <---------YAB1 <---- ----HSFB2a(2)   ------>ZmHOX2a(1)   --------->MYB46(3)     --------->GLK1(2)<----------DOF2 -------- --->HSFB2a(2)   ==============HOX2a_HOX2a <---------ANAC55(2)   <---------At4g35610<---------YAB1 ---LBD16 <---------DOF5.7(2)      --------->ANAC46         <---------ARR14(2)   <---------AHL20(2)   gataacgagagttaacctcctagtgatcgcaatattcaaaccactacgtacgatatgaagaaaatccagttgatcctttcttttttattaatcaaattaa  20658200                                                                                              <------NtERF2                                                                                              ------>NtERF2                                                                                              <------                                                                                            <--------                                                                                   <---------------AGL15                                                                                   --------------->AGL15                                                                                  ----------------->AG                            --------->ANAC58                                      ----------------->AGL1                            ------>MYB46(1)                                       ----------------->AGL3                            ------>MYB83                                          <-----------------AGL3                            --------->ANAC46              <-----------GT1         ----------------->AGL2  <------ZmHOX2a(1) --------->YAB1             <---------ARR11(3)                 <-----------------AGL2 ---AHL20(2)       <---------YAB1              --------->ARR11(3)         <----------DOF2   <-------- -->AHL20(2)      *TSS      --------->ANAC58  --------->CCA1(1)        <-----------GT1 <---------ICU4 -----TOE2(3)    --------->YAB1               --------->RVE1(1)       --------->AHL20(2)    <-------- ->AHL20(2)     <---------YAB1            --------->AHL20(2)--------->ANAC46 --------------->AtSPL8--   tgaaggagtatgagaaccattataaaaaccaagccattcccctaaaaaatatcatcttattcacacatctaattaactttaagtaccaaaaatggcgggc  20658300                                                           --------->AtMYB61                                                           ------->GAMYB                                                           --------->YAB1                                           --------->ARR11(3)      <---------HSFC1(2)                                           <---------ARR11(3)      <---------HSFB2a(1)                                     <---------ARR11(3)   <---------ATHB12                          <----------DOF2  <---------ARR14(2)   --------->At4g35610    <---------------------WRI1---------->DOF2        ------>ZmHOX2a(2)   --------->TOE2(3)   ------>NtERF2 --------->ARR11(3)   <---------MYB55(2)   --------->HSFB2a(2) ---ATERF1(1)         <---------ALFIN1<------ZmHOX2a(2)   --------->MYB46(3)   <---------HSFB2a(2) -ANAC46             <------NtERF2   --------->ARR14(2)  ------>MYB83          <---------HSFC1(1) -ANAC58            --------->RAP2.6(2)    --------->ARR14(2) --------->YAB1   --------->HSFC1(1) -ANAC58            <---------ATERF1(1)------>ZmHOX2a(2) ------>MYB46(1)   <----------DOF2 ------->REM1(1)  --------->At4g35610<---------ARR14(2)  -------->P--------->HSFC1(2)   tacaacctcgaagctatcgaagcggcacctttgaaagacgatctggatattgtgatcccaaccatcagaagcctcgactttctagagcaatggagaccat  20658400                                                              --------->LBD16                                                             --------->LBD16                                                   <------ZmHOX2a(2)                                                   --------->ARR14(1)                                                   --------->CCA1(2)                                                  --------->ARR11(3)                                                  --------->AGP1  <-------GAMYB                                                  <---------ARR11(3)                                                  --------->ARR14(2)                           ------                                                  <---------ARR14(2)   --------->ZAT6         -------                   --------->ATHB12   <---------HSFB2a(1)   <---------HSFB2a(2)               <------                   <---------ICU4     --------->HSFB2a(1)   --------->HSFB2a(2)          --------->YAB1                  <---------YAB1      <---------HSFC1(2)<---------GLK1(1)                ------->GAMYB             ----------->RAV1(2)      --------->HSFC1(2)--------->GLK1(1)                --------->TOE2(3)           <---------ALFIN1        <---------GLK1(1)------>ZmHOX2a(2) <---------YAB1 --------->MYB46(3)   ttttgcaccattaccacctgatcattgtccaagatggagacccttccatcaagatccgagttcccgagggttatgactacgagctctacaaccgtaatga  20658500                     <---------ARR11(3)             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------MYB46(3)                          -----         ===================================HOX2a_HOX2a                                    <---------ARR14(2)       --------->ARR14(2)                         <-------GAMYB                            --------->ARR14(2)       --------->ARR11(3)                        --------->MYB55(2)                        --------->ARR11(3)       <---------ARR14(2)                        <---------MYB46(3)                        <---------ARR11(3)       <---------ARR11(3)               ---------->DOF2                                   <---------CCA1(2)      <------ZmHOX2a(1)              ------>ZmHOX2a(1)                           ---------->DOF2----- --->YAB1------>ZmHOX2a(2)     ------->TEIL  --------->ALFIN1<----------DOF2  <---------HSFB2a(2) -->ICU4====================================HOX2a_HOX2a <---------At4g35610   --------->HSFB2a(2) ---YAB1<------ZmHOX2a(2)     <---------CCA1(2) <---------AtMYB61  <----------DOF2    ----------->GT1   tatcaacaggatccttggtccaagagctaattgtatctcctacaaagatggtggttgtcgctgctttggcttcatggtttctaaaaagaagtatatctac  20658600               <----------DOF2           <---------WOX13(1)         <---------ICU4         --------->ATHB12        --------->ICU4                                                                              -        <---------YAB1                                              --------->ANAC58                <      --------->YAB1                                                --------->AtLEC2                -     --------->ICU4                                                 --------->ANAC58                -     <---------YAB1                                          <---------YAB1                         -    <---------TOE2(3)                             ------->MYC3      --------->ANAC46   <-----------GT1   --------->YAB1          <----------DOF2<----------DOF2  --------->YAB1           <---------AHL20(2) ---->REM1(1) <---------ANAC58      ----------------------->TaNAC69(2)           ------->TEIL       - ---->ANAC46  <---------ANAC58     -------->ATHB1 <-------MYC3   <-------TEIL --------->AtLEC2      -   accattgatgatgattgctttgtaagtctcttttgaattattctctttaacacgttttcatttatgattcatgcaactccatgcatttttttcttcttga  20658700  Previous    Next  AGI:  At5g50750.1    Description:  RGP4; alpha-1,4-glucan-protein synthase (UDP-forming). similar to RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1) [Arabidopsis thaliana] (TAIR:AT3G02230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68304.1); contains InterPro domain Alpha-1,4-glucan-protein synthase, UDP-forming; (InterPro:IPR004901) Range:  from: 20658218    to: 20659886    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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