Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        <---------AHL20(2)                                      <---------AHL20(2)                            <---------LBD16 ----->GT1                      --------->YAB1       <---------AHL20(1)           <---------At5g28300 ->ARR11(3)                     --------->AHL20(2)   --------->AHL20(1)          <-----------GT1    - --ARR11(3)                     <---------AHL20(2)  <---------AHL20(2)    ------>MYB83--------->LBD16 >RVE1(1)                <-----------GT1          --------->AHL20(2)      ------>MYB46(1)           < >CCA1(1)   ---------->ID1 <---------YAB1<---------YAB1                 <---------MYB59           ---   tttatatgttttttgtttttttttgttttatcatttatattttcttattcatatatatatttgttagaaaaaaacctaatgttttaccctgaaaatacac  20641900                                            <---------TOE1(3)                                            <---------TOE2(3)                                            <---------YAB1                                      <--------HAHB4                                  <---------AHL20(2)                                  --------->AHL20(2)                                               --                                 --------->AHL20(2)                                       <------MYB46(1)                              --------->AHL20(2)                                          <------MYB83                             --------->AHL20(2)  <---------AHL20(2)                       -----------                        <---------YAB1--------->ATHB12                                   <---------TOE2(3)    <---------REM1(1) <---------ICU4  <---------ICU4                                     --------->MYB59 <---------ICU4       --------->YAB1 <---------ATHB12                                --------->WOX13(1) -------->ICU4       --------->ICU4--------->WOX13(1)                              ----------------->AGL1 ---------YAB1       <---------YAB1<-----------GT1                              ----------->HVH21<XXX ------>YAB1  ---------->DOF2<---------AHL20(2) --------->AHL20(2)  <---------YAB1<-----------------AG   tgataattgtagcactgaaagtcatgatgatataaattaatcatttaagattaaatgtgtgaaacttagtactattgtaccagtgaccaattaggttatt  20642000                                                                                      --------->ARR11(3)                                                                                      <---------GLK1(2)                                ------>MYB46(1)                                       <---------ARR11(3)                              --------->AtMYB61         ----------->RAV1(1)         --------->ICU4                              XXXXXXXXXXXXXXXXXXXX>MIR171A                          ----------->ARR10                        <---------ICU4               --------->ANAC58             ---------->DOF2                ---------->DOF2 ------>MYB83         --------->ANAC58           --------->LBD16           --------->AHL20(2) <---------MYB59      <------ZmHOX2a(1)           --------->LBD16 ------->ZAT6   --------->MYB52(1)             --------->LBD16                 --------->ANAC46 >GT1   --------->YAB1 --------->ICU4        <---------LBD16                  <---------LBD16 XXXXXXXXXXXXXXXXXMIR4243 <---------YAB1  <---------ARR14(2)              <----------DOF2   aagtctacaattttaaaataaaggcattatgaccaaacctcgcctataccggaggaagcaccagtgatgagaacaactttcccgtaaagattttcagaga  20642100                                                                                          <------MYB46(1)                                                                                          <------MYB83                       --------->ARR11(3)                                                --------->MYB111(1)                       <---------ARR11(3)                             ----------->GT1    --------->MYB59                     --------->ANAC58        <------NtERF2      ---------->DOF2          --------->MYB46(2)      ----------->GT1--------->ANAC58   ------------------------>ANAC81                <---------MYB52(1)     <---------HSFB2a(2)              ---------->DOF2  --------->At4g35610   ---------->DOF2     ----     --------->HSFB2a(2)         ----------->GT1     <---------------------WRI1   ------------>AtMYB77   aaattgtcgagaaaatagactgcaagaacttgaagaagtaaaaaggaggcaagaagaagcagagaccaaagaaggtgaagaaaggagcagttaggttgag  20642200                                                                                           ------->GAMYB                                                                                          --------->ANAC58                                        --------->ATHB12                                  --------->ANAC58                                  --------->TOE2(3)         *TSS                          --------->ANAC46                                 ----------->GT1           --------->KAN4(2)     <---------AHL20(2)                                 <---------ANAC55(2)     <------ZmHOX2a(2)       --------->AHL20(2)                            --------->YAB1               <---------ATHB12      ----------->TBP       <-----------GT1     <------ZmHOX2a(2)  --------->At4g35610            <-----------TBP--------- ------>DOF2             --------->WOX13(1)   <---------At4g35610<----------DOF2 ----------->TBP ----   aaagtcgtttatcaactccatttttgtcgatcaaaacgtaaatgatttagctctcatcgatcattctcttttatcagcgatatataaatacaacgccaat  20642300                                                                               <---------AtLEC2                                                       <------ZmHOX2a(2)       <---------ANAC58   ---                                                      <---------ARR11(3)       <---------ANAC46   <--                                                 --------->ANAC58   ----------------------->TaNAC69(2)                                                 --------->ANAC58 --------->ALFIN1          ---------                                            --------->ANAC58      <---------ZAT6            ---------                                            --------->ANAC58      <---------ANAC46  <---------ARR14(2)                                            --------->ANAC46      <-----------RAV1(1)       --------- --->CBF                                --------->CCA1(2)   --------->ALFIN1   <---------ANAC58  <--- ----->YAB1        --------->MYB52(1)  <----------ID1 --------->ARR11(3)----------->RAV1(1) ---------   actaagttggattttagacaaaaacggtgatgagacgaagagagacaagacacgaagatcaagtggtagtgtggcaacattgcatggaaccgagacgaca  20642400                              <---------ATERF1(1)                              ------>NtERF2                              --------->AtMYB61                             --------->MYB46(3)                                                <-----                          --------->DEAR3(1)                                         --------->ARR11(3)  <---------ANAC46        <---------ETT(2)                                           <-----------ARR10 ---->MYC3                <---------DEAR3(1)                                     <------ZmHOX2a(2) -----MYC3              ------->PIF5                                            <---------ARR11(3) -->HVH21               <-------PIF5              <----------DOF2       <--------P   <---------ARR14(2) >ANAC46               --------->ANAC46      <----------DOF2    <---------ARR11(3)   <---------ARR11(3) >ANAC58              ------->TEIL      <<<<<<<<<TBF1     --------->ANAC46      --------->ARR11(3) ------O2<---------ARR11(3)  --------->DEAR3(1)   <---------DAG2--------->ARR11(3)   --------->ARR14(2) >ANAC58 --------->ARR11(3)<---------ATERF1(1)   --------->TOE2(3) <----------DOF2  <---------CCA1(2)   cgttgtgtcaagatgtggaaaatgcacgtcgacgaccccttcttcttctttcctttatccacataacatctttggtagataagatcaaatcttcgttcca  20642500                                                   <---------ZAT6                                                 <---------ANAC58    --------->WOX13(1)                                                 <---------ANAC46   --------->AHL20(2)                                             --------->SPL7         <---------AHL20(2)                                           <---------SPL7          --------->ICU4                      --------->ANAC46    <---------ANAC58        XXXXXXXXXXXXXXXXXXXX>MIR420                      --------->ANAC58    <---------ANAC58    ----------->GT1                   <----                      --------->ANAC58   --------------->AtSPL3--------->At5g28300              -----            <---------ANAC58       <---------AHL20(2)    <-----------GT1          <---------ANAC58     --------->ARR11(3)            --------->AHL20(2)   <---------YAB1  --------->YAB1       -------- ----ALFIN1 <---------ANAC58     <----------DOF2 <---------ANAC58>>>>>>>>>GT-2    <---------ANAC58   cctataagttattgtcgtttccaaacgacactattctttaattgtcgtacttcgtgttattactcggtaattaatcacaaaaatgcttctcgctctaata  20642600                                                        <---------WOX13(1)                                                     <---------AHL20(2)                                                     <---------YAB1      ------->MYC3                                  <---------AHL20(2)               <---------AHL20(2)      <-------MYC2                                  --------->AHL20(2)          ------>ZmHOX2a(1)      <-------MYC3                             --------->AHL20(1)              <---------MYB59-------      ------->MYC2 <---------AHL20(2)          <---------AHL20(1)          <------MYB46(1)    =======    ------->TEIL  <---------AHL20(2)           <---------AHL20(2)          <------MYB83     --------- --------->AtLEC2 --------->AHL20(2)          <---------AHL20(2)          --------->MYB59  --------->MYB52(1) -------GT1    --------->ATHB12               --------->AHL20(2)       ------->TEIL  --------->AHL20(2) ---->YAB1    --------->ICU4                  --------->YAB1          XXXXXXXXXXXXXXXXXXXX>MIR865-5P ->YAB1       <---------YAB1               --------->YAB1           <---------YAB1  <---------AHL20(2)   accatgcacatgggtgatgatttattttgggtattagtagtccaaaaattatattttaattgatcaaactatgaatttggtcctaatttatatcaacgga  20642700                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                    --------->MYB52(1)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <---------bZIP60(1)                               --------->bZIP60(1)                              xxxxxxxxxxxxxxxx>smallRNA(s)                             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             <xxxxxxxxxxxxxxxxsmallRNA(s)                            ----------->HVH21                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           xxxxxxxxxxxxxxxx>smallRNA(s)                          --------->bZIP60(1)                          <---------bZIP60(1)                          <---------bZIP60(2)                          --------->O2                          <---------TGA2(1)                          --------->TGA2(1)                          <---------O2<xxxxxxxxxxxxxxxxsmallRNA(s)                          --------->TGA1a                          <---------TGA1a                          <---------ANAC46                          <---------ANAC58 <------MYB83                          <---------ANAC55(1)                          ----------->GT1 <---------AtMYB61                          <---------ANAC58<---------MYB46(3)                          --------->ANAC55(2)                          <---------ANAC55(2)                          ========================MYC_MYB                          ======================MYC_MYB                          ===========================================bZIP_DOF                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         ----------->STF1<xxxxxxxxxxxxxxxxsmallRNA(i)                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        <---------TGA2(2)<---------MYB55(1)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        <xxxxxxxxxxxxxxxxsmallRNA(s)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        xxxxxxxxxxxxxxxx>smallRNA(i)                       ----------->TGA1  <---------MYB52(1)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       ----------->HVH21 <--------P                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                     <---------ANAC55(2) <xxxxxxxxxxxxxxxxsmallRNA(s)                     <---------At4g35610 xxxxxxxxxxxxxxxx>smallRNA(i)                     --------->ANAC55(2)<xxxxxxxxxxxxxxxxsmallRNA(s)                     --------->At4g35610<xxxxxxxxxxxxxxxxsmallRNA(i)                   <-----------RAV1(2)<xxxxxxxxxxxxxxxxsmallRNA(i)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxx>smallRNA(i)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 --------->ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                    <---      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------MYB46(3)                                   -----     ===============================bZIP_DOF                                                    <----     --------->TOE2(3)<-----------HVH21 <-------GAMYB                                        <-------     <----------DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                     <-------  --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                      <-------  <---------ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)         --------->AHL20(2)           -------- <---------CCA1(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)        --------->YAB1                  <------- --------->GLK1(1)<------ZmHOX2a(2)<xxxxxxxxxxxxxxxxsmallRNA(i) --------->YAB1               -------- <---------GLK1(1)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-----------GT1   ----------->GT1    --------->YAB1 >GAMYBxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <----------DOF2 ===================================MYC_MYB<------MYB46(1)<----------DOF2 --------->CCA1(2) --------- >At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ARR14(2) ---------->DOF2   --------->TOE2(3)   ctgatatctttaatacttagatcaggtgacgtgacaacatacggttggtcagtattttcgctttaataaaaaaaagataaacaaaatttctttaataatt  20642800  Previous    Next  AGI:  At5g50700.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to ATHSD1 (HYDROXYSTEROID DEHYDROGENASE 1), oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G50600.1); similar to short-chain dehydrogenase reductase [Brassica napus] (GB:ABM90633.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 20640250    to: 20642260    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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