Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    <---------ARR14(2)                    <---------------AGL15                    --------------->AGL15                 <-----------GT1  <-----------GT1            <--------HAHB4        --------->ARR14(2)                                            <----            --------->YAB1       <---------GLK1(1)   ----------->GT1                      --------->AHL20(2)            <---------ICU4    <---------AHL20(1)   <---------ARR11(3)                     <---------AHL20(2)           <---------ATHB12   --------->AHL20(1)   --------->ARR11(3)                     --------->YAB1         --------->WOX13(1)  --------->AHL20(2)   --------->CCA1(1)                <-----------GT1       <---------ATHB12  --------->AHL20(2)       --------->RVE1(1)   ---------->ID1 <---------YAB1<-   tagactcaaatcaatcattttaccatataaaatatatatccgtttcacaaaaatatcgtttatatgttttttgtttttttttgttttatcatttatattt  20608500                                                                                                <----                                                                                            ---------                                                                                            <--------                                                                                           --------->AHL20(2)                                                                                        --------->AHL20(2)            <---------AHL20(2)                                                         --------->AHL20(2)           --------->AHL20(1)             <---------LBD16                         <---------YAB1-----           <---------AHL20(1)           <---------At5g28300   <---------REM1(1) <---------ICU4  <----          <---------AHL20(2)           <-----------GT1    --------->ICU4        --------->YAB1 <-----        --------->AHL20(2)      ------>MYB83--------->LBD16<---------ICU4      <---------YAB1<------- -----AHL20(2)                  ------>MYB46(1)           <---------YAB1       --------->ICU4-------- --------YAB1                 <---------MYB59           --------->YAB1  ---------->DOF2<---------AHL20(2)   tcttattcatatatatatttgttagaaaaaaacctaatgttttaccctgaaaatacactgataattgtagcactgaaagtcatgatgatataaattaatc  20608600       <---------AHL20(2)      --------->AHL20(2)  <---------YAB1  <---------TOE2(3)                                      --------->ZAT6  <---------TOE1(3)                             ----------->GT1                           ------>MYB83 -----ICU4                                      <------MYB83                            XXXXXXXXXXXXX >AHL20(2)                                      <------MYB46(1)                         <---------MYB59 -AHL20(2)                                     --------->MYB59                    <---------ICU4 ---->ATHB12                                   <---------TOE2(3)          --------->MYB52(1) ----HAHB4                                 --------->WOX13(1)             ---------->DOF2 ------>MYB46(1) ----ATHB12                              ----------------->AGL1      --------->AHL20(2) --------->AtMYB61 ----GT1                              ----------->HVH21<XXXXXXXXXXXXXXXXXXXXMIR4243 <---------YAB1 ->WOX13(1)               <---------YAB1<-----------------AG      --------->YAB1 --------->ICU4     <   atttaagattaaatgtgtgaaacttagtactattgtaccagtgaccaattaggttattaagtctacaattttaaaataaaggcattatgaccaaacctcg  20608700                                            --------->ARR11(3)                                            <---------ARR11(3)                                            <---------GLK1(2)              ----------->RAV1(1)         ----------->ARR10           --------->ANAC58               --------->ICU4           --------->ANAC58             ---------->DOF2                          --------->ARR11(3)         <------ZmHOX2a(1)            --------->LBD16                            <---------ARR11(3)     --------->LBD16                 --------->LBD16                           --------->ANAC58   <---------LBD16                   --------->ANAC46           ----------->GT1--------->ANAC58   --- XXXXXXX>MIR171A                    <---------LBD16            --------->HSFB2a(2)              ----- ---------ARR14(2)              <----------DOF2                <---------HSFB2a(2)         ----------   cctataccggaggaagcaccagtgatgagaacaactttcccgtaaagattttcagagaaaattgtcgagaaaatagactgcaagaacttgaagaagtaaa  20608800                                                <------MYB83                                                <------MYB46(1)                                   ---                                               --------->MYB111(1)                          ---------                            ----------->GT1    --------->MYB46(2)                          <---------ANAC55(2)   <------NtERF2      ---------->DOF2          --------->MYB59                             ---------- --------------------->ANAC81                <---------MYB52(1)                       --------->YAB1 ----->DOF2  --------->At4g35610   ---------->DOF2     ---------->DOF2               <------ZmHOX2a(2) ->GT1     <---------------------WRI1   ------------>AtMYB77     <-----------GT1   --------->WOX13(1)   aaggaggcaagaagaagcagagaccaaagaaggtgaagaaaggagcagttaggttgagaaagtcgtttatcaactccatttttgtcgatcaaaacgtaaa  20608900                                                 ------->GAMYB                                                --------->ANAC46                                                --------->ANAC58                 --------->KAN4(2)              --------->ANAC58    <---------At4g35610                --------->AHL20(2)    --------->At4g35610                <---------AHL20(2) ------>ATHB12 <---------ATHB12      ----------->TBP >TOE2(3)      *TSS    <----------DOF2 ----------->TBP --------->YAB1                             --- ->GT1         <------ZmHOX2a(2)   <-----------TBP------------>CBF           --------->MYB52(1)  <---   tgatttagctctcatcgatcattctcttttatcagcgatatataaatacaacgccaatactaagttggattttagacaaaaacggtgatgagacgaagag  20609000                                                                                        ------>NtERF2                                                                                        <---------ATERF1(1)                                                                                        --------->AtMYB61                                     <---------ANAC46                                  --------->MYB46(3)             <------ZmHOX2a(2)       <---------AtLEC2   <-------MYC3                <---------ETT(2)            <---------ARR11(3)       <---------ANAC58   ------->MYC3                --------->DEAR3(1)       --------->ANAC58   ----------------------->TaNAC69(2)                        <---------DEAR3(1)       --------->ANAC58 --------->ALFIN1          --------->ANAC46                ------->PIF5  --------->ANAC58      <-----------RAV1(1)       ----------->HVH21               <-------PIF5  --------->ANAC58      <---------ZAT6            --------->ANAC58               --------->ANAC46  --------->ANAC46      <---------ANAC46  <---------ARR14(2)<---------ANAC46    ------->TEIL      <<< ------>CCA1(2)   --------->ALFIN1   <---------ANAC58  <---------O2<---------ARR11(3)  --------->DEAR3(1) -------ID1 --------->ARR11(3)----------->RAV1(1) --------->ANAC58 --------->ARR11(3)<---------ATERF1(1)   agacaagacacgaagatcaagtggtagtgtggcaacattgcatggaaccgagacgacacgttgtgtcaagatgtggaaaatgcacgtcgacgaccccttc  20609100                                                     <---------ALFIN1                                           --------->ARR14(2)                                           --------->ARR11(3)                                       <------ZmHOX2a(2)                                      --------->ARR11(3)                        --------->ANAC58    <        <---------DAG2--------->ARR11(3)   <-----------ARR10                    --------->ANAC58    <        <----------DOF2       <--------P   <---------ARR11(3)                   --------->ANAC46   --       --------->TOE2(3) <----------DOF2   <---------ARR14(2)         <---------ANAC58       --------   <----------DOF2    <---------ARR11(3)  <---------CCA1(2)           <---------ANAC58       <------- <<<<<<TBF1     --------->ANAC46      <---------ARR11(3)       --------->ARR11(3)          <---------   ttcttctttcctttatccacataacatctttggtagataagatcaaatcttcgttccacctataagttattgtcgtttccaaacgacactattctttaat  20609200         <---------ZAT6       <---------ANAC58    --------->WOX13(1)       <---------ANAC46   --------->AHL20(2)                    <-------MYC2   --------->SPL7         <---------AHL20(2)                    ------->MYC3 <---------SPL7          --------->ICU4                         <-------MYC3 ---------ANAC58        XXXXXXXXXXXXXXXXXXXX>MIR420             ------->MYC2 <---------AHL20(2) ---------ANAC58    ----------->GT1                   <-----------GT1    --------->ATHB12 ------------->AtSPL3--------->At5g28300              --------->YAB1    --------->ICU4 ->AHL20(2)    <-----------GT1          <---------ANAC58      ------->TEIL  <---------AHL20(2) --AHL20(2)   <---------YAB1  --------->YAB1       --------->YAB1       <---------YAB1 -DOF2 <---------ANAC58>>>>>>>>>GT-2    <---------ANAC58   --------->AtLEC2 --------->AHL20(2)   tgtcgtacttcgtgttattactcggtaattaatcacaaaaatgcttctcgctctaataaccatgcacatgggtgatgatttattttgggtattagtagtc  20609300                                                                                               xxxxxx                                                                                               xxxxxx                                                                                              -------                                                                                              <xxxxxx                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                         --------->bZIP60(1)                                                                                         <---------bZIP60(1)                                                                                        xxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                      ----------->HVH21                                                                                     xxxxxxxxxxxxxxxx                                                                                     xxxxxxxxxxxxxxxx                                                                                    <---------TGA1a                                                                                    <---------ANAC58                                                                                    <---------bZIP60(1)                                                                                    <---------ANAC58                                                                                    ----------->GT1                                                                                    =================                                                                                    --------->TGA1a                                                                                    <---------ANAC55(1)                                                                                    <---------ANAC46<                                                                                    <---------ANAC55(2)                                                                                    --------->ANAC55(2)                                                                                    =================                                                                                    =================                                                                                    <---------bZIP60(2)                                                                                    --------->bZIP60(1)                                                                                    <---------TGA2(1)                                                                                    --------->TGA2(1)                                                                                    <---------O2    <                                                                                    --------->O2<xxxx                                                                                   ----------->STF1<x                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   xxxxxxxxxxxxxxxxxx                                                                                  <---------TGA2(2)<-                                                                                  xxxxxxxxxxxxxxxx>smallRNA(i)                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                 ----------->HVH21 <-                                                                                 ----------->TGA1  xx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               --------->ANAC55(2) <-                                                                               <---------ANAC55(2) <x                                                                               <---------At4g35610<--                                                                               --------->At4g35610<xx                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                             <-----------RAV1(2)<xxxx                                                                             xxxxxxxxxxxxxxxx>smallRNA(i)                                                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           --------->ARR11(3)<xxxxxxx                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  --------->YAB1<xxxxxxxxxxxxxxxxxxxx                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              <---------WOX13(1)                               <----------DOF2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <---------YAB1                                   <---------ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------AHL20(2)                              --------->GLK1(1)xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->AHL20(2)               --------->AHL20(2)  --------->TOE2(3)<-----------HVH21 <xx          <---------AHL20(2)          ------>ZmHOX2a(1)    <---------GLK1(1)<------ZmHOX2a(2)<xxxxxxx     <---------AHL20(1)              <---------MYB59==========================================MYC_MYB     <---------AHL20(2)          <------MYB46(1)    ------->GAMYBxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->AHL20(1)          <------MYB83     --------->At4g35610 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <---------AHL20(2)          --------->MYB59  --------->MYB52(1)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->AHL20(2)       ------->TEIL  <---------AHL20(2)  ===============================bZIP_DOF    --------->YAB1          XXXXXXXXXXXXXXXXXXXX>MIR865-5P <---------CCA1(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->YAB1           <---------YAB1  <---------AHL20(2)--------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)   caaaaattatattttaattgatcaaactatgaatttggtcctaatttatatcaacggactgatatctttaatacttagatcaggtgacgtgacaacatac  20609400  Previous    Next  AGI:  At5g50600.1    Description:  ATHSD1 (HYDROXYSTEROID DEHYDROGENASE 1); oxidoreductase. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G50700.1); similar to short-chain dehydrogenase reductase [Brassica napus] (GB:ABM90633.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 20606928    to: 20608915    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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