Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->TOE2(3)                                                                                        <----------DOF2                                                                                     <---------AHL20(2)                --------->ARR11(3)                                             ------>MYB46(1)        <---------ZAT18               ------->TEIL           ---------->DOF2   ------>MYB83      <---------------AtSPL8         <---------CCA1(2)      ------>ZmHOX2a(1)------->GAMYB     ------  <----------DOF2               <----------DOF2      <---------ZAT18--------->GLK1(2)<-----------GT1   tagactttagagtacttagaacttggctccttgtcttttgtatctactaacttggttcgctcctaaagacaatctgtaacccactatttactttaatcca  20604800                                                    <------------------------ANAC81             <---------CCA1(2)                   <-----------GT1                        --------->YAB1       <---------ALFIN1                   ----------->GT1                               --------->AHL20(2)       --------->ANAC46                   --------->LBD16                          <----------DOF2  -     <-----------GT1                     <---------HSFB2a(2)              <---------ANAC58       ----   <-----------GT1   ----------->HVH21   --------->HSFB2a(2)              <---------ANAC58     ------ --->WOX13(1)------>ZmHOX2a(1)          <---------LBD16               <----------DOF2  <---------YAB1   tcaatttacacactcctatctatgtgaaggtgttctattttgtccggaaattttcgatttcggtttctggctctttgagtggcatctttataatataaca  20604900                                            <---------ANAC46                                            <---------ANAC58                                            <---------ANAC58                                        <------------CBF                                       --------->MYB52(2)               <------MYB46(1)                                       --------->ATHB12                 <------MYB83          <-----------GT1             <-------TEIL                 <---------ANAC46 ---------->GT1                   <---------YAB1              <---------MYB46(3) ----->MYB52(1)                   <---------TOE2(3)        <-----------RAV1(1)   ------------>CBF --- --->MYB46(3)     <---------ZAT14 <---------TOE1(3)   --------->ICU4    ----------->GT1      --------   aacagcaaaatttgacagtctatagtgagttttgttatggttcattgcttagtgacattatttgttgttgagggaggtttcaaaccaatagagatgaaag  20605000                                                                               <---------ICU4                                                                               --------->ATHB12                                                                              --------->ICU4                                                                            <---------ICU4                                                                            --------->YAB1                                                                           <---------ATHB51                                                                           <---------ATHB12                                                                           --------->ICU4           -                                                                         ------>MYB83              --  --------->HSFC1(2)                                                     ------>MYB46(1)           --  --------->HSFB2a(1)   <---------ARR11(3)                          --------->CCA1(2)    --------->GLK1(2)  <---------HSFB2a(1)   --------->ARR11(3)                         <---------ARR11(3)   <---------ARR14(2)  <---------HSFC1(2)    --------->AHL20(1)                     ---------->DOF2<---------YAB1     <--- -------->GT1           <---------AHL20(1)           <------ZmHOX2a(1) <---------MYB59  --------->ARR14(2) -->DOF2          ----------->GT1                   <----------ID1 --------->ARR11(3)   <---------GLK1(2)   tggaaacttctccacaagttgagaaaaatatttgataaaaacataagttggatgaggacaaacacaaaagataccaaataatgatttggagattctctta  20605100     --------->YAB1                                                     <---------ANAC58     --------->TOE1(3)                                                  <---------ANAC58          ---     --------->TOE2(3)                                             <---------REM1(1)    --------->At4g35610 ----->ZmHOX2a(1)                 <---------At4g35610            <------------CBF       <---------At4g35610 ------->TOE1(3)             ----------->HVH21   --------->At4g35610   <---------At4g35610     ------ ------->TOE2(3)       ----------->HVH21      ---------->DOF2 --------->AHL20(2)    <---------REM1(1) ------YAB1    ---------->DOF2    --------->At4g35610         <---------AHL20(2)<-----------RAV1(2)   tccttaatcttaaatactaaagtctatgacagtgacatctgaacagaagaaagctcaagagtatataaattgtagcttagcctctggtgaagcagaatca  20605200                               <----------DOF2                              ==================HOX2a_HOX2a                              ------>ZmHOX2a(2)                              =========================HOX2a_HOX2a                             ==========================HOX2a_HOX2a                             <------ZmHOX2a(2)                             ===================HOX2a_HOX2a                             <---------RVE1(1)                            --------->ARR14(3)                            <---------ARR11(3)                 --------->AHL20(2)        --------->ARR11(3)  --------->AGP1                      <---------MYB52(1)        <---------ARR14(2)  <---------AGP1                    <---------ANAC58        --------->ARR14(2)  <---------ARR14(3)                <---------ANAC58     <---------TOE2(3)      <---------ARR14(2)             --------->ARR14(2)   --------->ANAC58   <<<<<<<<<WRKY18          --------->ARR11(3)        <-----------GT1           --------->ANAC58  --------->WRKY18(1)<----------ID1                 <-----------HVH21     <---------ZAT6 ------->DOF2    <---------AHL20(2)      ------>ZmHOX2a(1) <---------ARR14(2)   --------->ANAC46 --->YAB1--------->CCA1(2)  --------->ARR14(2)  ------>ZmHOX2a(1)   <----------DOF2   caaagtcaaggatatggatttaaacaacaagatctttaacatccttcttcctattgtcacggtttcgtttcttttagtgttcatgccattttcaatattc  20605300                                                                         ------>ZmHOX2a(2)                                                                        =================HOX2a_HOX2a                                                                        <------ZmHOX2a(2)                                                                        =============HOX2a_HOX2a                                                                        <---------HSFB2a(1)                                                                        --------->HSFC1(2)                                                                        --------->HSFB2a(1)                                                                       <---------ARR11(3)                                                                       --------->ARR11(3)                                                                       <---------ARR14(3)                                                                       --------->ARR14(3)                                                ------->GAMYB --------->YAB1                                               --------->ANAC46        <---------ARR14(2)                                              --------->At4g35610      --------->ARR14(2)                                             <---------DOF5.7(2)       <---------ARR11(1)                                             --------->MYB52(1)       <---------CCA1(2)                                            <---------WRKY12  <---------ICU4                  <------                                            <---------WRKY45 --------->ICU4    <---------LBD16<------                                       ---------->DOF2       <---------YAB1   ------>ZmHOX2a(1) -----                                    --------->LBD16---------->DOF2    <---------ARR14(1) <---------ANAC58                                    --------->HSFB2a(2)  <-----------TGA1================HOX2a_HOX2a                                    <---------HSFB2a(2)<-----------STF1<-----------ARR10 <---------ANAC46                  --------->DAG2   <---------TOE1(1)--------->DAG2   --------->LBD16     <---------ANAC58       ------>ZmHOX2a(1)   ---------->DOF2  <---------WRKY38(1)    <---------LBD16<------ZmHOX2a(1)   ttcaagctcctccagttcataaggggatgcaaagagtccgagaaagtcaacggaaaagtcgtcatcatcaccggatcttcctcaggaattggcgaggtta  20605400                                                      <------MYB46(1)                                                      <------MYB83                                                     --------->MYB59                                                 <---------AHL20(2)                                              --------->MYB52(2)                       <------MYB46(1)        ----------->GT1                       <------MYB83         <--------P----------->GT1            ------>ZmHOX2a(1)               <---------MYB52(1)                             <---------REM1(1) ---MYB52(1)<---------HSFB2a(2)           <---------MYB46(3)       --------->ANAC58        --------->ALFIN1 --P        --------->HSFB2a(2)      --------->AHL20(2)            --------->ANAC58  <---------AHL20(2) ---->MYB52(2)  ---------->DOF2      <---------AHL20(2)          ---------->DOF2    --------->AHL20(2)   gtttgtttgtaatcctagaaaagcttggtctattttttataaattggttagttatttggtaaaaaacaaaagcaatttgaagttgatttaatggtgtagc  20605500                                                                                    --------->ZAT14                                                                          <---------At4g35610                                                                          ----------------------->TaNAC69(2)                                                                          --------->At4g35610                                                                        <---------RAP2.6(2)                                                                      <---------MYB46(3)                                                                     --------->ALFIN1<-----------RAV1(2)                                                                     <---------AtMYB61     <---------HSFC1(2)                                                                     <---------DEAR3(1)    --------->ZAT2                                                                   <---------ZAT2  --------->ALFIN1                                                                 <-----------RAV1(2)<---------ZAT14                                                           ====================================HOX2a_HOX2a                                                         <---------ARR14(2)  <---------WRKY18(1)                                                         --------->ARR14(2) --------->WRKY12   <-----   <---------ANAC58                                      <---------ARR11(3)<---------ANAC58--------->HSFC1(2)   <---------ANAC46                                      <-----------ARR10<------NtERF2 <------ZmHOX2a(1)   <---------ANAC58                                      --------->ARR11(3)<---------ANAC58<---------ZAT2 ------>MYB83                       --------->ZAT6      <------ZmHOX2a(1)<---------MYB46(3)<---------HSFB2a(1) ------>MYB46(1)        <------ZmHOX2a(1)   --------->ZAT2 ------>ZmHOX2a(2)----------->HVH21  <-----   acctagcgtatgagtatgctcgtagaggagcatacttgactctagtagctcggagagaggatcgtctccaggtggtggctgaccggtgcaggaagcttgg  20605600                           --------->bZIP60(1)                           <---------bZIP60(1)                   <---------TOE1(1)                   <---------TOE2(1)                <---------SPL7      <---------TGA1a  --------->At5g28300      =============================================bZIP_DOF       <-----------GT1      <---------O2--------->SPL7                               --------->ANAC58  --------->MYB46(3) <---------DEAR3(1)            <---------TOE2(3) <---------At4g35610<---------LBD16     ---------->DOF2        --------->ANAC58 -MYB46(1)    --------->ALFIN1        <---------YAB1           --------->ANAC46         --------->CCA1(2) -MYB83     <-----------RAV1(1)     --------->YAB1<---------DOF5.7(2)          <---------MYB52(1)   ttcaccagacgttgctgtggtacgcggtgatgtctcagtcatcaaagactgtaaacgttttgttcaagaaaccatctctcggtttggaagatgtgagtta  20605700  Previous    Next  AGI:  At5g50580.1    Description:  SAE1B (SUMO-ACTIVATING ENZYME 1B); SUMO activating enzyme. similar to SUMO activating enzyme 1b (SAE1b) [Arabidopsis thaliana] (TAIR:AT5G50680.1); similar to SUMO activating enzyme 1b (SAE1b) [Arabidopsis thaliana] (TAIR:AT5G50680.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO68306.1); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Molybdenum cofactor biosynthesis (InterPro:IPR009036) Range:  from: 20602575    to: 20604822    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g50590.1    Description:  ATHSD4 (HYDROXYSTEROID DEHYDROGENASE 4); oxidoreductase. similar to ATHSD7 (HYDROXYSTEROID DEHYDROGENASE 7), oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G50690.1); similar to short-chain dehydrogenase reductase [Brassica napus] (GB:ABO71657.1); similar to short-chain dehydrogenase reductase [Brassica napus] (GB:ABM90633.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 20605214    to: 20606522    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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