Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         ---------->DOF2                 --------->PCF2                 <------ZmHOX2a(2)                --------->ARR14(2)                <---------ARR14(2)                                                     --------->ANAC58               <------ZmHOX2a(1)                      --------->ANAC58             <---------HSFB2a(2)           <---------MYB52(1)                         --------->ANAC58  --------->RAP2.3(3)       ---      <---------ARR14(2)                       --------->At4g35610    --------->ZAT2   --------->ANAC58      --------->ARR14(2)                  --------->WOX13(1)          --------->At4g35610        ----  --------->ANAC46------>ZmHOX2a(2)    --------->GLK1(2)        --------->ANAC46   --------->HSFB2a(2)   gtataccctatctgttaggatcccacaaagtaatgcattagaatcagtcagcaataacgcatcaacacgacgagcagccattcttcgacaagcttcaaat  20591800                                                                            <---------ATHB12                                                                           --------->ANAC58                                                                           --------->ANAC46 ---------                                                    <---------MYB52(1)     --------->ANAC58 ---------                                                <---------At5g28300      <---------ALFIN1   ---------           <---------------AtSPL8            <----------DOF2 <---------ALFIN1          --------->REM1(1)       <----------DOF2              --------->TOE1(3)        --------->AtMYB61 --------->ANAC58 ------>DAG2   --------->ZAT14      --------->TOE2(3)       --------->MYB46(3) --------->ANAC58 ------>DOF2   <---------ZAT14--------->ANAC46 <-----------GT1     <----------DOF2     --------->ANAC46   aaagttgtgctatctggtacagtaagagccttacacaaccttagtctctttaccgttctctcaccactcctttccccactcaagcttctacaccaagaaa  20591900                                                                                       <---------ICU4                                                                                       --------->ATHB12                                                                                      --------->ICU4                                                                                      <---------YAB1  --------->ANAC58                                                                 --------->ALFIN1  --------->AtLEC2                                                                <------------------  --------->ANAC58                          <---------YAB1                        ------------------>ATHB9 >ANAC58                    <---------AHL20(2)     ------>ZmHOX2a(1)             <---------ANAC58 >ANAC46                   <---------AHL20(1)     --------->TOE2(3)              <---------ANAC46 >ANAC58                  <---------CCA1(2)------->TEIL                          <---------ANAC58   caacatgcaaacatttacttccaatctcatatattttgaaacatgtatcattcctcagaaaaatgaagaattggaagagaatggggtgatgattacatgg  20592000                                                      --------->DEAR3(1)                                                      --------->AtMYB61                                                --------->DEAR3(1)                                 --------->GLK1(1) --------->DEAR3(1)                       <---------ANAC46         <---------ALFIN1                    ==================HOX2a_HOX2a  <---------ALFIN1                    ------>ZmHOX2a(2)          --------->MYB46(3)                   ===================HOX2a_HOX2a  --------->AtMYB61                   <------ZmHOX2a(2)           <xxxxxxxxxxxxxxxxsmallRNA(s)                  <---------ARR14(2)         <---------ALFIN1                  --------->ARR14(2)         --------->AtMYB61                  <---------ARR14(3)         --------->DEAR3(1)                  <---------ARR11(3)        --------->MYB46(3)                                    <--                  --------->AGP1 <---------GLK1(1)--------->MYB46(3)                             ----                  --------->ARR11(3)       ------>NtERF2                            <---------ANAC46                  --------->ARR14(3)     --------->MYB46(3)                         <---------ANAC58                 <---------GLK1(1) <------ZmHOX2a(2)  <---------ALFIN1              <---------ANAC58-                 --------->GLK1(1)<---------ARR11(3) --------->MYB46(3)      <-----------GT1    <---- ---WRI1  --------->CCA1(2)    <------ZmHOX2a(1)--------->AtMYB61        <----------DOF2       ------   aagaacgagaagatgtgagagatcttcgtgggaggagatcagagccaccaccaccaccaccttcgttttctgaagcttttttccttccttgaaatgaatg  20592100                                                                         <---------GLK1(2)                                                             ==============HOX2a_HOX2a                                                             ------>ZmHOX2a(2)                                                            ===============HOX2a_HOX2a                                   <---------MYB46(3)       --------->GLK1(1)       <------ZmHOX2a(1)    --------->MYB46(3)              <---------GLK1(1) -------LBD16             <---------PCF5                    <------ZmHOX2a(2)                    ---- ----->MYB52(1)          <---------SPL7                    <---------ARR14(2)                -------- -------->LBD16      ----------->HVH21                     --------->ARR14(2)                -------- -----WRKY18(1)     ------>ZmHOX2a(1)                      *TSS     ------>ZmHOX2a(1)     --------->YAB1 ----->HVH21  <----------DOF2<---------ALFIN1    <-----------GT1 ------>ZmHOX2a(1)     <----------DOF2   accggagaaggagagacttttcctcgacggaccaccttggttagccattttcaactattccgatctcctccttcaaattctctgaaacactttaataaaa  20592200        <---------ARR14(2)                         <------------CBF        <---------GLK1(2)                    <---------ARR14(2)      --------->GLK1(2)  --------->YAB1                             --------->ARR14(2)  ------>MYB83    <---------HSFB2a(2) ----->AHL20(2)  <---------AHL20(2)         <----------TaMYB80   ------>MYB46(1) --------->HSFB2a(2) ->AHL20(2) <---------YAB1               <-------TEIL          <---------MYB59  <---------LBD16 ->YAB1 --------->ARR11(3)         <---------At4g35610       -------->P       <----------DOF2   aaaatcatcagattttgatttttttttttttttttgcagcaaatgcatattcgaattggaacttaccaaataatctttctctttcggaaaatttttgata  20592300                                                         --------->ICU4                                         <-----------ARR10--------->ATHB12                                         <---------ARR11(1)                                       ---                                         --------->ARR14(2)                               --------->ANAC58                                         ------->TEIL  --------->YAB1                     --------->ANAC58                                         <---------ARR14(2)  ------>ZmHOX2a(2)         --------->ZAT18            ---------->DOF2             <---------CCA1(2)<---------YAB1                <---------ZAT18     --------->ANAC46                   <---------ARR14(1)-------->HAHB4           --------->ALFIN1   <-----------GT1          --------->TOE1(2)          <---------ICU4    --------->ARR14(2)  <------ZmHOX2a(2)   tcaattcacagaataaaagagaaattcaaaactgggaatttcgaatcttcacttcgataatgatcgacgatttcgaatcgcctagttggggcacgatcga  20592400                                               ---------->DOF2                                   --------->LBD16                                   --------->ANAC58                                  --------->HSFB2a(2)                   ---------->DOF2        <-----                                  <---------HSFB2a(2)                 --------->ANAC58   --------->MYB52(1)                                 <---------LBD16                      --------->ANAC58  ---------->DOF2          <---------TOE1(2)      <---------ANAC46        <---------HSFB2a(2)         --------->ANAC58 ------->DOF2          <---------AHL20(2) --------->WOX13(1)     ---------->DOF2   ---------->DOF2  <   taatgcagttcgaaggaattggaattttttttgtttctgggaatcaatcgaaagaaattttggaagagaaagacgaaaggagagggaaagcaaagggcca  20592500                    <---------ICU4                    --------->YAB1                    <--------HAHB4               --------->AHL20(2)           --------->AHL20(1)           <---------AHL20(2)           --------->AHL20(2)           <---------AHL20(1)        --------->ATHB51        --------->YAB1        -------->HAHB4        <--------ATHB1                              <---------MYB46(3)        <---------ICU4                             --------->ALFIN1        <--------HAHB4                            --------->LBD16                        --------->ANAC58       --------->AHL20(2)                        <---------ANAC46                        --------->ANAC58       --------->ICU4      xxxxxxxxxxxxxxxxxxx>smallRNA(si3)<----------DOF2           --------->MYB46(3)       <---------ATHB51--------->AHL20(2)        <---------ANAC58                 <---------MYB52(1)       <---------YAB1  <---------AHL20(2)        <---------ANAC58            <---------ARR14(2)     --------->YAB1 --------->ATHB51          <---------ARR14(2)             --------->ARR14(2)     < ----------->GT1   --------->AHL20(2)         --------->GLK1(2)              --------->GLK1(2)      < ------RAV1(2)<---------WOX13(1)              --------->ARR14(2)        <-----------GT1  --------->ANAC46 ------ZmHOX2a(1)  --------->ICU4        ---------->DOF2    <---------DAG2  --------->WOX13(1)      -   gaggagataataattaattgaataattaaaaaaaaaaaaaaaaaaaagaatccgtggtggaacttttcttcattttgccaatctgttaaccacgaaaata  20592600                                                        --------->At4g35610                  --------                                                --------->SPL7                             --------->LBD16                                            --------->LBD16                            <---------ARR14(2)                        <---------DEAR3(1) <---------LBD16                             --------->ARR14(2)             <---------ARR14(2)           <---------LBD16        --------->TOE2(3)  <---------AHL20(2)             --------->ARR14(2)          <---------ANAC46  ------>NtERF2            --------->AHL20(2)            <---------GLK1(1)     <-----------GT1       <---------At4g35610     --------->AHL20(2)  - --------->GLK1(1)  ------>ZmHOX2a(2)   <---------REM1(2) ----------->HVH21    <---------AHL20(2)   < ---------ARR14(2) <------ZmHOX2a(2)--------->ANAC46 ------>NtERF2<---------YAB1<---------AHL20(2)--- ---------GLK1(2) --------->ARR14(2)--------->ANAC58--------->DEAR3(1)   ----------->GT1  <---------HSFB2a(2) -------->ARR14(2)<---------ARR14(2)--------->ANAC58<---------DEAR3(1)  <---------TOE2(3)<---------LBD16   cagatttgcccttggtatccgatcgggctgtgagtatcacgctacgcgggaacgacgacgctgacattgttaatgaggttatttatttaaatccggaaac  20592700  Previous    Next  AGI:  At5g50530.1    Description:  CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein. similar to CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G63490.1); similar to CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G50640.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79772.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68312.1); similar to unknown [Populus trichocarpa] (GB:ABK94323.1); contains InterPro domain Cystathionine beta-synthase, core (InterPro:IPR000 Range:  from: 20589102    to: 20592159    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g50540.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G50645.1) Range:  from: 20591802    to: 20592667    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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