Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <-------MYC3          ------->MYC3          ------->MYC2          <-------MYC2         <---------ANAC58                                       --------->ARR11(3)         <---------ANAC46                                       <---------ARR11(3)         <------NtERF2                                          --------->ARR14(2)         <---------ANAC58                                       <---------ARR14(2)        ------>NtERF2                                      <---------RAP2.3(1)       <---------ANAC46                                    ------>NtERF2       <---------ANAC58                                    <---------ERF1       <---------ANAC58                                    ----------->RAV1(1)    ----------->HVH21                                     <---------DEAR3(1)     ------>ZmHOX2a(2)    <---------DEAR3(1)                --------->GLK1(1)   --------->ATERF1(2)   <------ZmHOX2a(2)    --------->ALFIN1             <---------LBD16          <---------ATERF1(2)   --------->CCA1(2)  <-----------RAV1(1)           --------->MYB52(1)       <------NtERF2         --------->ARR14(2)  --------->ALFIN1             --------->MYB52(1)       ------>NtERF2          --------->AGP1 --------MYB46(3)            <---------MYB52(2)         <---------ATERF1(1)    <---------ARR14(2) ------->LBD16               --------->MYB46(3)         --------->LBD16        <---------AGP1-------- -------ANAC46           --------->At5g28300           <---------LBD16         --------->ARR11(3) ------LBD16            --------->TOE2(3)             <---------LBD16          <---------ARR11(3) -------RAV1(1)         ----------->GT1        <---------At5g28300   --------->ATHB12      ---------- ---At4g35610           --------->TOE1(3)  ------>ZmHOX2a(1)<------NtERF2      --------->ARR14(3) ---->RAV1(2)      ------>ZmHOX2a(1)  <---------GLK1(1)--------->ANAC46        <---------ARR14(3)   - -->At4g35610     --------->TOE2(3)--------->LBD16    <---------HSFB2a(2)    ----------->ARR10      -   gcgggtgtggcgcgtgtattcctaaaccgtaacaaaccggagttcctatcaccgttcccggcggcagttcttcattgttaagatctggcacagccacatg  20578000                                 --------->MYB52(1)                               <------NtERF2                              ----------->RAV1(1)                              ------>NtERF2                             ----------->HVH21                             --------->DEAR3(1)                            <------NtERF2                            --------->RAP2.3(1)                           <---------ATERF1(1)                          <---------DEAR3(1)                          --------->DEAR3(1)                         <---------At4g35610                           --------->ANAC58                         --------->At4g35610                       --------->ANAC58 --------->MYB52(1)                      --------->ZAT2                               --------->ANAC46 ------------>AtMYB77                      <---------At4g35610                          --------->ANAC55(2)                   <------ZmHOX2a(2)                               <---------ANAC55(2)   ----------->RAV1(1)<---------ZAT2                               --------->ANAC55(1) --------->At4g35610  --------->At4g35610                          --------->ANAC58----------->HVH21 ->O2             --------->ARR14(2)                          <---------ICU4       ----------->TGA1 ->RAV1(1) --------->ETT(2)<---------RAP2.3(1)             --------->bZIP60(1)   --------->YAB1 -------->ANAC58  <---------ARR14(2)                       <---------bZIP60(1)---------->DOF2 -------->ANAC58 <------ZmHOX2a(1)  ------->GAMYB   ------>ZmHOX2a(1)  --------->ANAC58             -   atcagcaacatcgtccacaggatcagcagcggcgacaacgggctctccctcgtccttagggacatcatcacgcaagaaatcaaagatgacggtttgagac  20578100                                    <--------P                                  <------MYB46(1)                          <---------ANAC58                          <---------ANAC46                          <---------ANAC58                        --------->ARR14(2)                        <---------ARR11(1)                        <---------ARR14(2)                       <---------CCA1(2)                     <---------ANAC58                     <---------ANAC58                     --------->ANAC55(2)                --------->ARR14(2)<---------MYB46(3)                                              ---                <---------GLK1(2)<---------DEAR3(1)            --------->ANAC58                ------ --------->ANAC58    <---------ANAC55(2)                       --------->ANAC58                ------ --------->ANAC58--------->GLK1(1)<------MYB83                 --------->ANAC46                ------ --------->ANAC46<---------GLK1(1)<---------DEAR3(2)          ------->TEIL  <-------TEIL   <--------- -------->RAP2.6(3) <---------LBD16<-------GAMYB <---------AtLEC2 ------->TEIL        <---------ICU4   actacggcatcaacatcagatttccgtatcgtgagtcggttgctctcttgagcatggagccatgaacgcatcgtgaggtccatgacaaacatttcacaag  20578200                               --------->YAB1                          --------->At4g35610                       --------->At4g35610                       <---------ZAT2    --------->CCA1(2)  --------->ZAT2 ------>TOE2(3)        <---------At4g35610     <------ZmHOX2a(2)              --------->ALFIN1 --->ANAC58          ---------->CDC5          XXXXXXXXXXXXXXXXXXXX>MIR166A-G--------->CCA1(2) --->ANAC46          <-----------RAV1(2)    --------->LBD16          --------->CCA1(2) --->ANAC58       --------->ATERF1(1)     <---------LBD16      ------>ZmHOX2a(1) --GT1     --------->CCA1(2)  <------ZmHOX2a(2)=======================HOX2a_HOX2a           <--------   ccttagataagagatttggagcctcagcagcgatcatactcacatccggatcaaacttcattatcctcttgatacgagagatggggaactcgtgattctt  20578300                                                                          --------->MYB111(2)                                                                          --------->MYB55(2)                                                                         <--------P                                                                        <-------GAMYB                                                                       <---------MYB46(3)                                                                    <------MYB46(1)                                                                    <------MYB83                                                                    <---------MYB46(3)                                                                   <---------AtMYB61                                                                   <---------MYB46(3)                                                                 <-------GAMYB                                                                <---------MYB46(3)                                                                <-----------RAV1(1)                                                                --------->MYB55(2)                                                              <------NtERF2<-------GAMYB                        --------->WRKY12                    <---------DEAR3(1)             ------>MYB46(1)   --------->ARR14(2)     <----------DOF2  --------->MYB55(2)             ------>MYB83<---------WRKY18(1) <---------ANAC58------>NtERF2<---------MYB46(3)          <---------At4g35610  <---------ARR14(2)  <---------ARR11(3) <---------AtMYB61          --------->At4g35610  <---------GLK1(2) <---------MYB52(1)--------->MYB55(2)     --------->ANAC58   --------->WRKY38(1)  <---------ANAC58<---------MYB46(3)     --------->ANAC58   --------->WRKY45--------->MYB52(2) <---------MYB52(1)     --------->ANAC46 <----------DOF2<----------DOF2<---------YAB1<---------MYB52(1) -YAB1  <-----------GT1 ----------->HVH21    <---------ANAC46--------->MYB55(2)               <------   gacattcaagtcaccttccatcccctttgaccagaaactctttagttgctcgttatctttcggtggctgttggtggttgttgttgttgttctccattttt  20578400                                                                                     ================                                                                                     <------ZmHOX2a(1)                                                                                    <------MYB46(1)                                                                                    <------MYB83                                                                                  <--------P                                      <---------AtMYB61                      --------->CCA1(2)                                   --------->ALFIN1                          --------->ARR14(1)                                 <---------ANAC46      ----------->GT1      --------->ARR11(3)                         <---------RVE1(1)            <---------TOE2(3)     --------->ARR14(2)                         <---------CCA1(1)          ---------->DOF2         <---------ARR11(3)                        --------->ARR11(3)         <---------AHL20(2)       <---------ARR14(2)          --------->ALFIN1   <---------AHL20(2)  <-----------TBP            --------->ARR11(1) ---AHL20(2) *TSS       <---------ARR11(3)     <-----------TBP       <---------ARR14(2)  <---------TOE2(3)   tttttgtttgaagtgtttgggtttgagatatttttatgtggaggtttgcatatataaaggaaaattaagcgtatataagatatggtaggataagattaag  20578500                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                                      ------->TEIL           --------                                                        <---------TOE1(3)                    <-------       <----------DOF2                                  <---------TOE2(3)                   <--------    ------>ZmHOX2a(2)                                 <---------AHL20(2)          --------->MYB52(1)  <---------ARR11(3)                                 --------->AHL20(2)      ----------->HVH21<------  --------->ARR11(3)------->TEIL              <---------TOE2(3)   --------->ZAT6 ----------->HVH21 ==========HOX2a_HOX2a                ------------>MYB.PH3(2)   <-----------GT1 <---------WOX13(1)   aagtgatctctttacatatatgaatctcaacctatttagtagtttgttaagaatatttaatgttattaactgtatgtgtgtgactgacagacttgtggtt  20578600    <---------YAB1  --------->YAB1 <---------YAB1 ---MYB83 ---MYB46(1) ------->GT1 ---->MYB46(2) -----MYB46(3) ---->MYB111(2)                                                                                   <-- ---->MYB111(1)                                                                                   <-- ---P--------->YAB1                                               <---------ZAT6                 <--- ----ANAC46                                                  --------->YAB1                    ------ ----MYB55(1)                                             ------>MYB83                         <----- ->MYB55(2)                               ----------->GT1 ------>MYB46(1)                     ------- --MYB46(3)       ---------->DOF2      --------->DAG2   <---------MYB59                       <------ -AtMYB61     ---------->DOF2         ---------->DOF2<-----------GT1     <---------AHL20(2)   ------- -GAMYB  ----------->GT1         <-----------GT1 --------->AHL20(2)     --------->YAB1    --------->AHL20(2)   ggtattataagaagaaaaaagaaagagatttgtttttacttaaagtgtatattatataccaaataatagtcttataaaaatgaaacaaaaaaaaaaatac  20578700                                                                 <---------ICU4          <---------AHL20(2)                                     --------->YAB1 --------DOF2                                             ----------->GT1 -------DAG2                                          <---------ARR14(3) ------DAG2                                           --------->ARR14(3) --->ARR11(3)                  --------------->AtSPL3 --------->ARR14(2) ----ARR11(3)      ----------->GT1                    <---------ARR14(2) -->CCA1(1)       ----------->GT1                     <---------ARR11(3)                   ---------- -----GT1--------->AHL20(2)  <-----------GT1          --------->ARR11(3)         --------->TOE2(3)--- -->RVE1(1)     ---------->DOF2--------------->AtSPL8--------->RVE1(1)          ----------->GT1------   ctttttctctataaaattgaaagttaaaattttgctgtacaaaacttagttttgaatatcttgttaaaaatgatgttttcaaatgttaaatgtgaaagca  20578800                                 --------->GLK1(2)                             --------->YAB1                          --------->YAB1                             <-----------GT1  <---------TOE2(3)                         <---------YAB1          <---------AHL20(2)  <<<<<<<<<<<<<<<<<LFY >DOF2                  --------->AHL20(2)   <---------YAB1     <---------AHL20(2)  <---------AHL20(2) ------>ATHB51          <---------AHL20(2)   ----------->GT1  --------->ANAC55(2)  --------->AHL20(2) --->YAB1              --------->YAB1     --------->ICU4    <-----------GT1<---------MYB46(3)   taatttgctcaaaattttaagagaattttaataagaatttgctcatgatgttaaattgaattttacttaatttacattggttcaaattaatgtatgaaac  20578900  Previous    Next  AGI:  At5g50490.1    Description:  CCAAT-box binding transcription factor Hap5a, putative. Identical to Nuclear transcription factor Y subunit C-5 (NFYC5) [Arabidopsis Thaliana] (GB:Q9FGP6); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT5G27910.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65104.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 20577660    to: 20578413    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version