Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      <---------MYB46(3)                                                              --------->MYB52(1)                                                             ----------->HVH21                                                           --------->ANAC58                --------->ALFIN1                                                           <---------ANAC58           <---------ALFIN1                                                           <---------ANAC55(2)   ------>ZmHOX2a(2)                                                           --------->ANAC55(2)  <------ZmHOX2a(2)                                                           --------->TGA2(1)   --------->ARR11(3)                                                           <---------ANAC58    --------->AGP1                                                           <---------TGA2(1)   <---------ARR14(3)    <------ZmHOX2a(2)                                      --------->ANAC58    --------->ARR14(3)   <---------ARR14(2)                                      <---------bZIP60(1) <---------ARR11(3)   --------->ARR14(2)                                      --------->bZIP60(1) --------->ARR14(2)  <------ZmHOX2a(1)                                       ----------->STF1     <-----------ARR10 --->ZAT18                         --------->ICU4        <---------TGA2(2)     <---------ARR14(2) ----ZAT18                      <---------TOE2(3)       ----------->TGA1     ----------->ARR10   acgaggatcagtgagtaagaagagaagaccgattgagataattagagaaacgaagacaatgacgtaacgcttgttgagcgagatcttcccacggtgttgg  20549700                                                                                          <---------GLK1(2)                                                                                          --------->ARR14(2)                                                                                          <---------ARR14(2)                                             <------NtERF2                             --------->ANAC55(2)                                            ------>NtERF2          <---------ARR14(2)  <---------ANAC46                                 ------>ZmHOX2a(2)        <---------ANAC58             <---------ANAC55(2)                                <---------GLK1(1)         <---------ANAC58          ----------->HVH21                                --------->GLK1(1)         <---------ANAC46          ----------->TGA1                               --------->ARR14(2)      ----------->TGA1           --------->LBD16                    ------>ZmHOX2a(2)       --------->LBD16       <------ZmHOX2a(1)<-----------HVH21                  <---------AGP1<------ZmHOX2a(2)      <---------DEAR3(1)        --------->LBD16                  --------->ARR14(2)       --------->ANAC46<-------GAMYB        <---------LBD16     <               <------NtERF2   <---------ARR14(2)   <---------AtMYB61         ------>ZmHOX2a(1)     <             <---------ANAC46--------->DEAR3(1)     <-----------RAV1(1)   --------->ARR14(2)        <   ----------->GT1<---------ARR14(2)      <---------LBD16<------NtERF2    <---------ARR14(2)     ----   actcgatgtaaaatgtcgtcgatctgaaacgccgatctctgattcccgccgattgtggtggcgttggaggaaactgaatcctcccggtgacggattcgag  20549800                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                     --------->ZAT18              ---      <---------LBD16                                                --------->ZAT14           <-----     <---------ANAC46                                                <---------ZAT18           ------ ---------ANAC58                       --------->SPL7                <---------ZAT14       ---------- ---------ANAC46                     <---------SPL7          --------->DEAR3(1)       --------->GLK1(2) ---------ANAC58                     <-----------HVH21 <---------ALFIN1              <---------GLK1(2) ----->ALFIN1          <---------AtMYB61----------->HVH21 --------->DEAR3(1)  <---------ARR11(3) <---   tgtcgttttggggaatcaaatgctggtggtcttcttcgtcgtccgacgagtttcgctccatcgccgaagagtgaactcaatttcttagaatctaaaagtt  20549900   --------->MYB46(3)   --------->REM1(1) ----------->RAV1(1) ------->LBD16 ------>ANAC55(2) ------>HSFB2a(2) -------HSFB2a(2) ------>ANAC58 ------>ANAC58 -------ANAC55(2) ------>ANAC46 ----ARR14(2) --->ARR14(2)                        ----------->GT1                             <------ZmHOX2a(1) >DOF2                              <---------------------WRI1                 <---------TOE2(3) ------LBD16            ---------->DOF2                   ------->TEIL >>>>>>>>>TBF1   ccgcaacaacaattcgatagatgattcaaagagaagaaaacgaaaatttctagggacatgaaactacattgaagaagaagtaaggatagagtagtagaga  20550000                                <----------DOF2                              ------>NtERF2                              <---------At4g35610                              --------->At4g35610                        <------ZmHOX2a(1)        <--                       -------->ATHB1                                <------MYB83                 <--                       --------->ATHB12                              <------MYB46(1)         --------                       --------->YAB1                               --------->MYB111(2)     <-------TEIL                       <---------ICU4                              <--------P        <---------SPL7                      <---------YAB1                             --------->ATHB12   <------MYB83  <--                      <---------ATHB12                           <---------MYB46(3) <------MYB46(1)                <------ZmHOX2a(1)--------->At5g28300             --------->MYB55(2)--------->MYB111(1)       --------->REM1(2)    <---------RAP2.6(2)                 --------->ALFIN1   <---------------AtSPL3    <---------ANAC58  --------->ICU4                       <<<<<<<<<<<<<<<<<LFY    <---------------AtSPL8    <---------ANAC58--------->YAB1                        ----------->HVH21       *TSS --------->SPL7   aattaagcgtgaagaagaggattaatcattgccgctgtaactaaacgagttagtgagatggtgacagtggttggaggagactgagttggtacgattcata  20550100                     <---------YAB1                   --------->ATHB12                   -------->ATHB1                   <---------ICU4                   --------->ATHB51                                          <---------AHL20(2)                  --------->AHL20(2)                                         <---------AHL20(1)                  --------->ICU4                                             --------->AHL20(2)      --------->ANAC55(2)                                               <---------YAB1      <---------ANAC58                        <-----------GT1         ----------->GT1      <---------ANAC58       --------->MYB52(1)                     <------------CBF -------ANAC58    <---------YAB1            <---------WOX13(1)    <---------AHL20(1) -------ANAC58    --------->AHL20(1)     <---------YAB1           --------->AHL20(1) ->YAB1           <---------AHL20(2)<---------AHL20(2)            --------->ARR11(3)        --------- -------ANAC46  <---------ICU4  ----------->GT1                --------->AHL20(2) <---------AHL20(2)   gcgggtttacttgattcaaaattattagtacaaccggtttaatttgattaaccttgggctaagaaaaaaatattgttattttattttatatgtaagtatt  20550200                                 --------->HSFB2a(2)                                         <-------                              <---------YAB1  --------->AtLEC2                               --------                         --------->YAB1     <---------ANAC46                                ---------                  <---------ALFIN1         <-----------------------TaNAC69(2)               <--------                  --------->ANAC58     ----------->GT1                                 --------->ANAC58                  --------->ANAC58   --------->ZAT14                                   --------->ANAC58                  --------->ANAC46   <---------ZAT14    <---------ETT(2)         <----------DOF2                <---------ALFIN1 <---------HSFB2a(2)--------->MYB46(3)       --------->ARR14(2) >ICU4  <-----------GT1 <---------ATHB12 ----------->HVH21                  <---------MYB52(1)   tcagaacaaattacaatcccacaccaatagttattctagagcagtgacatgtaaaccatcgacattcaccaagaacccgtttcctttgcaaacaatgatg  20550300                                                                                                  ---                                                                                                  <--                                                                                                -----                                                            --------->ALFIN1                    <----                                   <-------MYC3            --------->LBD16                     ------                                   ------->MYC3           <---------ANAC46                     <-----  --------->KAN4(2)             <---------AtLEC2          <---------ANAC58                     <----- --ICU4                     --------->At4g35610           <---------ANAC58           <---------ATHB12 ->YAB1                    <---------ARR11(3)       <-------TEIL                 <---------AHL20(2) < >ICU4               --------->AHL20(2)         --------->ARR11(3)    <---------At4g35610      ------ -ATHB12          --------->WOX13(1)            <---------ARR11(3) <-------TEIL  --------->AHL20(2)--   agcacattcttgacagaaaccaattacattatctgcatgtgaaactccaagatgttcatcgcgtggaagttcatctactatatttaaatcaattggaggg  20550400                                                                                                  ---                                                                                                 <---                                                                                             --------                                                                                             <------- ------>ZAT18                                                                         <---------YAB1 -----TEIL                                                                           --------->AHL20(2) ---->ARR14(2)                                 <---------ANAC58                      --------->AHL20(1) -----ARR14(2)                                 <---------ANAC58                     <---------ICU4--- --->HSFB2a(1)                               <---------At5g28300                <---------AHL20(2)<-- ----HSFC1(2)                               <-----------GT1            <---------AHL20(2)   --------- ----HSFB2a(1)                          --------->ARR11(3)            --------->AHL20(2)<---------AHL20(2) ---------At4g35610                     <---------ARR11(3)           <---------AHL20(2)--------->AHL20(2) --->HSFC1(2)                         <---------TOE2(3)             --------->YAB1 --------->ICU4---- ------->MYB52(2)             --------->At4g35610       ----------->HVH21       --------->AHL20(2)<--   ttcgctgttaaatcgaaagaatgagttttctcttctgaataagattttaccgtggcatttgacatacctatattaattcaaaataaatattatataaaat  20550500                                     --------->ARR14(2)                                     --------->ARR11(3)       ---------->DOF2               <---------ARR11(3) ------>AHL20(1)                    --------->RVE1(1) ------AHL20(2)                --------->ANAC55(2)                              --------->YAB1 ->AHL20(2)                    --------->ANAC46                --------->ANAC55(2) --AHL20(2)                    --------->YAB1  <---------TOE2(3)               <------ZmHOX2a(2) ------>AHL20(2)              <-------TEIL    <---------DOF5.7(2)              ====================== -------AHL20(1)         --------->AHL20(2)   --------->MYB52(1)              --------->ARR11(3) >AHL20(2)             <---------AHL20(2)  --------->TOE2(3)   <---------ANAC55(2) ----->AHL20(2)        --------->AHL20(2)<---------YAB1 <-----------GT1       <---------ARR11(3) -------AHL20(2)  --------->AHL20(2)--------->CCA1(1)  <---------AHL20(2)    --------->YAB1   taaattttcaaaagaaacattttaaaaaaatatacataatatcttcattaacgaaatttaaacttacatgacaaaacaaggatcataagagtggaaaaca  20550600  Previous    Next  AGI:  At5g50420.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53770.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17270.1); similar to Os07g0572600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80219.1); contains domain PTHR13398 (PTHR13398) Range:  from: 20547432    to: 20550082    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g50423.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48605.1); contains domain PROKAR_LIPOPROTEIN (PS51257) Range:  from: 20550086    to: 20550697    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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