Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ---------->DOF2                                                                        --------->ANAC58                                                                        --------->ANAC58                                                                   <----------ARF1                  ------>NtERF2                                --------->HSFB2a(2)            ---------->DOF2                                    <---------HSFB2a(2)       ----------->GT1                                         <---------HSFC1(1)       <---------MYB46(3)--------->MYB52(1)                   <---------LBD16      <---------YAB1  --------->ANAC58      --------->YAB1  --------->GLK1(2)                  <-----   <---------YAB1--------->ZAT18     <---------ARR11(3)     --------->ARR14(2)             ---------- ----GT1<-------GAMYB --------->ANAC58   ------>ZmHOX2a(1)  <---------ARR14(2)    ---------->DOF2   acaagatgatggttaaaagcgggcaagtaccagacccaaggtcctatgagaaacttagggcgattctggaagacaaggcaaagacaaagaacagaaagga  20478600                     --------->AHL20(2)                     <---------AHL20(2)                    --------->ICU4                    <---------YAB1                 --------->ICU4            ---------->DOF2                 <---------YAB1        ----------->GT1     <-----------------AG          <-----------HVH21     ----------------->AGL1      --------->MYB59                            <---------HSFB2a(2) -ZmHOX2a(1) ----------->GT1  --------->ARR14(2)                            --------->HSFB2a(2) >DOF2<---------------AGL15   <---------ARR14(2)                ---------->DOF2             ------->TEIL   taagactgccatacttggtataattaatagcaaattcggtcgggttaaagctaagacgaaggggaagaaagatgagttttggaagtacaagacgaatcga  20478700                                     ---------->DOF2                      ------>ZmHOX2a(2)                                                   --------->GLK1(2)                     <------ZmHOX2a(2)                                                    <---------ARR14(2)                    <---------ARR14(2)                                                 --------->ANAC46                    --------->ARR14(2)                                             --------->CCA1(2)                    --------->ARR11(3)                        <-------TEIL      --------->ANAC58             <-----------HVH21    --------->TOE2(3)       <---------------AtSPL8--------->ANAC58        =====================HOX2a_HOX2a                  <---------ZAT6 <---------GLK1(2)------->TEIL        ------>ZmHOX2a(1)  <---------TOE1(3)         <----------DOF2     --------->ARR14(2)        ====================HOX2a_HOX2a       --------->AHL20(2)         <---------ARR14(2)      ----------->RAV1(2)  <---------TOE2(3)  <---------AHL20(2)        <------ZmHOX2a(1) --------->ARR14(2)   actacttctcctggtcgtcaccgatcttgaaggtagcctaaaagctatataaatgctttagtggtacatagtgaggattctcaagctatacgaatctagt  20478800                                                          --------->AHL20(2)        <-----------HVH21                                              <-----------GT1            <------ZmHOX2a(1)                                           --------->ATHB12            <---------TOE1(2)                       <----------DOF2     <---------AHL20(2)         ------>ZmHOX2a(1)                       --------------------->WRI1         <---------AHL20(2)    --------->TOE2(3)  --                ------>ZmHOX2a(1)         <---------AHL20(2)          --------->HSFB2a(2)         ---       <---------AHL20(1)                 --------->AHL20(2)          <---------HSFB2a(2)    --------       <---------ARR11(3)            --------->TOE2(3)<---------YAB1 --------->TOE1(2)  <---------ANAC46   tgtattcaatatatgttcctctgttctttgtacttatagccttatttattagcattctaattttttatgttcctaggacataccttggtcatgtgtagta  20478900                                                                   --------->CCA1(2)                <                                       <---------ARR11(3)        <<<<<<<<<RAP2.2                    -                                       --------->ARR11(3)    <----------DOF2                   <-----                             ---------->DOF2               <---------ATHB12                   -------      ---------->DOF2     <---------ETT(1)            --------->ANAC58                        <------   --------->ZAT18   <---------ICU4  --------->HSFC1(2)    --------->ICU4                    -------- ------->DAG2       <---------YAB1   <---------HSFC1(2)------------>CBF       <---------At4g35610   - ------->DOF2   <---------DAG2 --------->ANAC58       --------->ANAC46        --------->At4g35610   - --->GT1        <----------DOF2--------->ANAC58       --------->ANAC58<-----------GT1     ---------->DOF2   aaaagtgcaaaagtttagctttattattccgacaagcgaagtatctcttaagtagcaagcaatctttagatataactcttagctctctgcatcaaagatc  20479000                                          --------->ARR14(3)                                          <---------ARR14(3)    --------->ZAT14                       --------->GLK1(2)                                    ------   *TSS                                   <---------ARR14(2)                                   ------  --------->ANAC46                        --------->ARR11(3)                             <---------ANAC46  --------->bZIP60(2)        ---------->DOF2                                           <-------GAMYB ---------ALFIN1            --------->AHL20(2)                 ------>ZmHOX2a(1)      <---------ANAC46 -------->ANAC58        --------------->AGL15     ------>ZmHOX2a(2)                   <---------ANAC58 -ZmHOX2a(2)            <---------------AGL15     ====================HOX2a_HOX2a <---------GLK1(1) -->ARR11(3)           ----------------->AGL2   <---------ARR11(3)                --------->CCA1(2) ---ARR11(3)           ----------------->AGL3   --------->ARR11(3)         <----------DOF2  <-------- ->YAB1                ------->GAMYB      <---------ARR11(3)   <----------DOF2   --------->ARR14(2) -------->ANAC58     -------->P       --------->YAB1          --------->TOE2(3)<---------TOE2(3)  --- -------->ANAC46   --------->MYB46(3)----------->GT1<---------YAB1 ----------->HVH21  <---------ANAC58   acacacatcactctcttgtaaacaacccaaataaagaaaatgaaaatcttgatcttgattctatcctttgtgacactctttgagatttgcgttgtggacg  20479100                                                                                ------>ZmHOX2a(2)                                                          --------->ALFIN1     <------ZmHOX2a(2)      --------->YAB1                                   <---------ARR14(2)     >>>>>>>>>GATA-1     <------ZmHOX2a(2)                         --------->ANAC46               <---------ARR11(3)  <---------ETT(2)                            ------>ZmHOX2a(2)               --------->AGP1 --------->DDF1                             --------->ARR14(2)                >>>>>>>>>GATA-2 --->ANAC58                           <---------MYB52(1)--------->ALFIN1      --------->ARR11(3) --->ANAC58                <---------MYB52(1)<------ZmHOX2a(2)                >>>>>>>>>GATA-4 -ZAT18               --------->MYB52(1)    <---------ARR14(2)     --------->LBD16         <---------AtLEC2 ---->TEIL         --------->YAB1<-----------GT1  --------->MYB52(1)          >>>>>>>>>GATA-3   catgtcgatcatactgtggaaacataaccgttgattatccgtttgggatccgaaacggatgtgggcatccagggtatagagatctattgttttgtatgaa  20479200                                                                                       --------->O2                                                                                       <---------TGA1a                                                                                       ==============                                                                                       <---------O2                                                                                    ------>ZmHOX2a(1)                                                          <---------GLK1(1)       ------>ZmHOX2a(2)                              <---------YAB1              --------->GLK1(1)     <---------ARR11(3)                            <-------TEIL                  <---------CCA1(2)     --------->ARR14(2)                           <---------ARR11(3)         --------->ANAC58          --------->ARR11(3)                          <---------GLK1(2)           <---------ANAC55(2)   <---------AtLEC2       <---------TOE2(3)<---------TOE1(3)             <---------ANAC46   --------->ANAC46  --------->ALFIN1     <-----------RAV1(2)            --------->ANAC58 --------->ZAT6  --------->TGA1a   cgatgtgttgatgtttcacataagttcaggttcttatagagttttggacatcgattacgcatatcagtccataacactgcatgatcctcacatgtcgaac  20479300                                              --------->ARR14(2)                                              <---------ARR14(2)                                       --------->At4g35610                                       <---------At4g35610                                       <---------ZAT2                                 <----------DOF2                        --------->ANAC58     --------->ATHB12             --------->TOE2(3)                     ---------->DOF2   --------->ZAT2                   -------->P                ===                   <------NtERF2<---------ANAC46                        ------>MYB83              ===                  ------>NtERF2 <---------ANAC58                        ------>MYB46(1)           ---              <---------DEAR3(1)<---------ANAC58      --------->GLK1(1)==============================    --------->MYB46(3)  --------->ANAC58     <------ZmHOX2a(1)         ------>ZmHOX2a(1)   <--------- ===============================bZIP_DOF   <---------TOE2(3)   <-----------GT1         <----------DOF2   tgcgaaaccatcgtgctcggtggcaaaggcaatggctttgaagctgaggattggagaactccatatttcaatcctacctcagataatgtctttatgttga  20479400             <---------ARR11(3)                                                                <-----            <---------CCA1(2)                                                                  <-----   --------->KAN4(2)                                                                       <---------AHL20(2)  --------->HSFB2a(1)                                                                      --------->AHL20(2)  <---------HSFB2a(1)                                                                     --------->AHL20(2) <---------TOE1(2)                                                                    <---------YAB1 ================HOX2a_HOX2a   <--------P                                       --------->AHL20(2) =========================HOX2a_HOX2a                                          --------->AHL20(2) --->ZmHOX2a(2)             <---------TOE2(3)    --------->YAB1            --------->ICU4 <---------AHL20(2) ====HOX2a_HOX2a   ------>ZmHOX2a(1)          ----------->RAV1(1)        ---------->DOF2 <---------WOX13(1) --RAV1(1)------>ZmHOX2a(1) <---------TOE1(3)--------->REM1(1)--------->AHL20(2)<---------AHL20(2)   tcggatgttctcctaaatctcctatatttcaaggttagtaagttactacaacaatatttcaaaaaaaaatcaacttaaagattaaattttgatttattta  20479500  Previous    Next  AGI:  At5g50280.1    Description:  EMB1006 (EMBRYO DEFECTIVE 1006). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76897.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 20476464    to: 20478730    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g50290.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17350.1); similar to unknown [Populus trichocarpa] (GB:ABK92919.1) Range:  from: 20479003    to: 20481403    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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