Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              <------ZmHOX2a(2)                                                           --------->ARR11(3)                                                           <---------ARR11(3)    --------->ANAC58                                      --------->GLK1(1)                <------ZmHOX2a(2)    --------->ANAC58                                ---------->DOF2                        ==========  <---------ALFIN1        --------->MYB46(3)     --------->ANAC58                        --------->At4g35610 --------ETT(1)--------->YAB1                ----------->RAV1(1)           --------->REM1(1)   ------ ->DOF2 --------->At4g35610       ---------->DOF2--------->ANAC58<---------ATHB12        <---------At4g35610   tccgacactcatcggaatcaaaatttcaacaatcgcaaaagcttatgcaacaagaaaaggagatcaaatcaagacttacatctctcgattcagatcaaaa  20468100                                                                              ------>NtERF2                                                                             --------->RAP2.3(2)                                                                            --------->DEAR4(2)                                                                           ------>NtERF2                                                              <---------ANAC46<---------At4g35610                                                            ------>NtERF2  --------->ABI4(1)                                                           <---------RAP2.6(2)--------->At4g35610                                                          <------NtERF2   --------->AtMYB61       *TSS                                               --------->ATERF1(1)--------->DEAR3(1)     --------->REM1(2)                                   <---------ATERF1(1)--------->RAP2.3(1)     <---------ZAT14      <---------ANAC58               ------>NtERF2    --------->ANAC46     --------->ZAT14      <---------ANAC58              --------->ALFIN1  --------->DEAR3(1)  <---------ANAC58        <---------ANAC46              <---------DEAR3(1)--------->DREB2C(2)  <---------ANAC58 <---------TOE1(3)                   <---------MYB52(1) ------->GAMYB <-----------GT1  <---------ANAC46 <---------TOE2(3)              <---------ARR14(2)      <---------ALFIN1 ===================HOX2a_HOX2a   ------->GAMYB------>ZmHOX2a(2)         --------->DEAR3(2) ---->DOF2   <------ZmHOX2a(1) --------->MYB52(1) --------->ARR14(2)     --------->MYB46(3)   agagtcgtgtagtgaggaattagggtttgcgtataacggaagactttgatcggaaccggtggcgacttgaattccaccgccgcttacgagttacgaccca  20468200                                                                                                   <-                                                                                                   --                                                                                                  <--                                                                                                -----                                                                                              <------                                                                                            <--------ATHB1                                           ----------->RAV1(1)                              -------->HAHB4                                        --------->ANAC46                                    <--------                                      <-----------GT1                                       ---------                                   <---------HSFB2a(1)                                     <---------ATHB12                                   <----------TaMYB80                                      <---------YAB1                                  <---------ARR14(2)                    <---------YAB1     --------->ICU4                                  --------->ARR14(2)                  --------->YAB1      <---------TOE2(3)                --------->At4g35610--------->HSFB2a(1)               <---------YAB1      --------->YAB1             ---------->DOF2  <---------LBD16          <---------AHL20(2)--------->YAB1 --------->ICU4   aattagagaaattacaaaagctgcaagtgaattggggattttcccccacaaatttagtttattgaaaattgattataatcagtttttgtattaatgattg  20468300                                                                  <------------CBF                                                             <---------YAB1                                                             <---------AHL20(2)                                                            --------->YAB1          --------->AHL20(2)                                <---------AHL20(1)          <---------AHL20(2)                                --------->AHL20(2)   --------->YAB1                                      ------------>CBF --------AHL20(2)                                     --------->ANAC58 ------->AHL20(2)                                     --------->ANAC58 -------WOX13(1)          ----------->RAV1(2)       ---------->DOF2 ---->ATHB12            <-----------GT1            <------NtERF2 --------->ATHB51 ---WOX13(1)   --------->ZAT18                    --------->LBD16--------->ATHB12 -ICU4   <---------AHL20(2)                      --------->RAP2.6(2)        ----------->TBP<--------- >ATHB12 --------->AHL20(2)                     <---------LBD16 <---------YAB1---------->DOF2   attaattagaatttaattgcaccgttttacctgaagttttgttagtagtagccggaaagcaatattattattgggcctataaaagcccatttacattgtg  20468400                                            ------->MYC3                                            <-------PIF5                                            <-------MYC3                                            <-------MYC2                                            ------->MYC2                                            ------->PIF5                                            ------->MYC4                                            <-------MYC4                                           >>>>>>>>>>HY5                                           --------->ANAC46                                           <---------TGA1a                                           <---------O2                                           --------->PIF3(3)                                           --------->O2                                         <---------ALFIN1                                        <---------WRKY12                                        <---------WRKY45                                        <---------WRKY38(1)                                        ---------------->PIF3(2)                                       <-----------------PIF3(1)                                       ----------------->PIF3(1)                                       <----------------PIF3(2)                                 --------->TGA2(2)                                <-----------HVH21                                <-----------TGA1                               <---------bZIP60(1)                               --------->ANAC58                               <---------TGA1a                               --------->bZIP60(2)                               --------->bZIP60(1)                               ======================bZIP_bZIP                               <---------O2--------->TGA1a                               <---------ANAC55(2)                               --------->ANAC55(2)                               --------->ANAC55(1)                               --------->ANAC46                               --------->ANAC58                               --------->O2<---------PIF3(3)                               --------->TGA1a              --------->ZAT18 <-----------STF1         <---------ATHB12                     ---------         ============================================bZIP_DOF                         --------->ANAC46         ================================bZIP_DOF     *TSS------->TEIL                --------->ANAC58      ------>ZmHOX2a(1)     <------ZmHOX2a(2)      ------------>CBF             --------->ANAC58  ---      --------->AtLEC2     <---------ARR11(3)      --------->MYB46(3)           --------->ANAC58  ---      =============================HOX2a_HOX2a    --------->ANAC58       <---------KAN4(2)--------->MYB52(1) ---CBF  ---------->DOF2   --------->ARR11(3)     --------->ANAC58<---------LBD16     --------->ANAC58   ttctgttcctgcaaagtgcaaagagtagagatcacgtcatggtccacgtggcaaccaatgaatccaactctggagaatgaacacgaacacacaaacagaa  20468500                                             ----------->GT1                                             <----------ID1                                           ------------------------>ANAC81                                          --------->DAG2                                         ---------->DOF2                                       <---------AHL20(2)                                      --------->AHL20(2)                                     <---------YAB1       <---------YAB1              <---------ICU4                                            <-------    <------ZmHOX2a(2)              -------->ATHB1                  <---------TOE1(3)         --------   --------->ARR11(3)             <---------YAB1                  <-----------RAV1(2)    --------->MYB52(1)   <---------ARR11(3)             <---------AHL20(2)           <---------ZAT2            --------->YAB1 >YAB1 --------->At4g35610        --------->AHL20(2)           --------->At4g35610    --------->YAB1 -------->RAV1(1)                 --------->AHL20(1)           <---------At4g35610 ----------->RAV1(1) ------>MYB52(1)                  --------->ICU4  ---------->DOF2 =============================RAV   caacagatcatcagagaagaaactagaattgacaaaattattaaaaagcgaaaaaagaaaatgagagctcaggttttattatgtccaacaataacagctt  20468600                            <---------ZAT14                    <---------O2                   --------->YAB1                    <---------ANAC46               <---------ICU4                    --------->O2                --------->YAB1                                 <-----                   ------>NtERF2               <---------YAB1                                  ------                  <---------ALFIN1           --------->YAB1                                    ------               --------->ANAC58              <---------ICU4            --------->TOE2(3)       <-----               --------->ANAC46           --------->YAB1--------->At4g35610                  <-------               --------->ANAC58      --------->REM1(1)<---------ICU4 ------->TEIL           --------- --At4g35610  --------->ZAT18   --------->ANAC46<---------ICU4 --------->GLK1(2)          <---------LBD16 ->At4g35610  <---------ZAT18 <---------At5g28300 <---------YAB1    <---------GLK1(2) <----------DOF2   atggtcgtctctattgtgcgccacgtagacttcaccgctacaattcatcatcatcatcatctcagtttctgaatctcaatctctctcgcttctccggtgc  20468700 ----ZAT14                               --------->At4g35610 --->ZAT14                        <---------GLK1(2)                                                <- --->ABI4(2)                     <------ZmHOX2a(1)                                    <------MYB83 -- ----ZAT18------->MYC3         --------->LBD16                   --------->DAG2       <------MYB46(1) --MYB52(1)       <---------KAN4(2)--------->GLK1(2)             <---------TOE2(3)--------->MYB52(2) >LBD16   <-------MYC3        <---------LBD16      --------->KAN4(2)          ----------->GT1     <--   tctcttcttccacatggaggtatgttctcttgccaggaatctctgcttcagtttattctcaacacataaggtatacaaatgggttatttggtgtttctct  20468800             --------------------->WRI1        <---------WOX13(1)     ----------->HVH21   <---------ANAC58                                                                               ---   <---------ANAC46                                                                            ------   <---------ANAC58                                                                            <----- <---------ANAC46                                                                              <----- --------ZAT14                                  <---------ZAT6      <---------ARR14(2)        ------- ------->ZAT14                   --------->AHL20(2)                 --------->ARR14(2)        <------ ---------RAV1(1)   <---------YAB1    --------->ARR11(3)         --------->ALFIN1 <------NtERF2<-----   gtgttgtgtgactgattttgtgcttatagacgatttttaatatgttgatggtgttagcaattccagagtggaactggctcgagcggcaagagagggatgg  20468900 -------->GT1                                                                         <---------MYB46(3) ----->GT1                                                                            <------MYB83 -MYB46(1)       <---------ANAC46                                                     <------MYB46(1) -MYB83        --------->ZAT14                                                      <---------MYB52(1) -->ALFIN1     <---------ZAT14                                                <-----------GT1 ---AtMYB61    --------->SPL7            --------->At4g35610    --------->CCA1(2)   <--------P <----- ----MYB46(3)<---------SPL7      ---------->DOF2          <----------DOF2 <----------DOF2      ------   tggaaaatttgaagcggtacggtgtgatatcgtcgaaaagagtagctcaagttatggaggctttagatagaggtctctttgtaccagttggttcttcagc  20469000  Previous    Next  AGI:  At5g50230.1    Description:  nucleotide binding. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64202.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains InterPro domain Autophagy protein 16 (InterPro:IPR013923) Range:  from: 20465596    to: 20468107    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g50240.1    Description:  PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2); protein-L-isoaspartate (D-aspartate) O-methyltransferase. similar to PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1), protein-L-isoaspartate (D-aspartate) O-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G48330.1); similar to PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1), protein-L-isoaspartate (D-aspartate) O-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G48330.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO64209.1); contains InterPro domain Protein-L-isoaspartate(D-aspartate) O-methyltransferase; (InterPro:IPR000682) Range:  from: 20468454    to: 20469795    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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