Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ------->TEIL                   --------->ANAC46                                                 <------ZmHOX2a(2)                   --------->ANAC58                                                --------->ARR14(2)                   --------->ANAC58               ---------->DOF2                  <---------ARR14(2)               ------>MYB46(1)                 <------NtERF2                  --------->TOE1(3)              ----------->HVH21               --------->LBD16           --------->YAB1     ----------  --------->At4g35610    <---------GLK1(2)   --------->DEAR3(1)         --------->AHL20(2)<---------WRKY38(1)  <---------At4g35610    <---------CCA1(2)  <---------LBD16            <---------ATHB12   <---------WRKY45 ---------HVH21------>MYB83         <---------WRKY12       --------->MYB52(1) --------->TOE2(3)     < -------DOF2 <---------MYB59        <---------WRKY38(1)    ------------>AtMYB77    --------->AGP1 ---   tttcagcacaagagacctaacacgcttgaatctctgagtcaacctcgccggagaaagagcgtaacagttaccaataaaaacctcagatcgagtcaaagct  20353500              --------->CCA1(2)             <---------GLK1(2)             --------->ARR11(3)             --------->ARR14(2)             <---------ARR14(2)             <---------ARR11(3)             --------->ARR11(1)           ----------->ARR10       ------>NtERF2   --------->bZIP60(2)                                                 --------->KAN4(2)   --------->ANAC55(1)                                                <---------HSFB2a(1)   --------->ANAC58                                                   --------->KAN4(1)   --------->ANAC58                                                   <---------HSFC1(2)            <   --------->ANAC46                           --------->ARR11(3)      --------->HSFC1(2) --------->HSFC1(1) <---------ALFIN1                        <-----------HVH21            --------->HSFB2a(1)--------->HSFB2a(2) >DOF2--------->DEAR3(1)             --------->MYB52(1)    <------ZmHOX2a(1)             <---------HSFB2a(2) ---------REM1(2)                  <----------DOF2     --------->TOE1(2)         <-------TEIL     <-- ------>REM1(1)               --------->At4g35610    ------->TEIL     <---------KAN4(1)  <---------HSFC1(1)   tcaacacgccaccaagatttgcaaactagagaagcagcgttacggtcacatcttgaatctaggaactgaagaacgttctcaagtacgttttcgagaacat  20353600                                                                                            <------ZmHOX2a(2)                                                                                           --------->ARR11(3)                                                                                           --------->AGP1                                                                                    <---------ANAC46                                                                               <---------MYB46(3)                                                                       <---------At4g35610 --------->ARR14(2)                                                                    <------ZmHOX2a(2)      <---------ARR11(3)                                                        --------->At4g35610   <---------RAP2.6(2)                                            <------MYB83<---------At4g35610   <---------ANAC46                                            <------MYB46(1)        <---------ARR14(2)    ----------->ARR10                                <---------ANAC55(2)  <------ZmHOX2a(1) --------->At4g35610 <---------ARR14(2)                                --------->ANAC55(2)  ======================HOX2a_HOX2a  <--------P  -     ---------->DOF2     <-------TEIL       <---------ANAC46       --------->ARR14(2) ----------->GT1 -----------RAV1(2)     --------->CCA1(2)  <---------MYB46(3)   --------->ANAC58<-------GAMYB     --- ---------HVH21 --------->GLK1(2)          --------->MYB46(2)   --------->ANAC58<------NtERF2  ------   ggtcagggaaagtttgagaatttgagatacagttacgagatttgtttggtgaagaggaagatgagcaaggatcagctatggcggtagagggtagatccaa  20353700                      --------->At4g35610              <---------WRKY38(1)                     ---------->DOF2           <------MYB46(1)                           --------->ICU4       <---------MYB46(3)                   ------>ZmHOX2a(2) -------->ALFIN1  <-----------TGA1         <------ZmHOX2a(2)                                   <----- ---->GAMYB<------MYB83                   --------->ARR11(3)                                 -------- --->MYB52(1) <---------WRKY12            <---------ARR11(3)      <----------DOF2        <------ZmHOX2a(1)   cggtggagattgttggtcatcgtcatcttcagacatttctgagcgatcttgtgtcataaagagagaggctttggattcagattagagaagaggaagagga  20353800                            <---------ANAC46                   --------->HSFC1(2)                                                        --------                   <---------HSFC1(2)    <---------PCF2                                      <-------           >>>>>>>>>TBF1  <---------ANAC46                           --------->ATHB51      *TSS        >>>>>>>>>TBF1     <---------ANAC58 <---------At4g35610       --------->ATHB12  <---------AHL20(2)    <------ZmHOX2a(1)<----------DOF2  --------->ALFIN1 <---------ALFIN1   <---------LBD16<---------YAB1 -ZmHOX2a(1)  >>>>>>>>>TBF1 --------->ALFIN1 <----------DOF2        <---------MYB52(1)<---------AHL20(2) ---------------->ANAC81  <---------ANAC58 --------->At4g35610---------->ID1      <---------YAB1  <--   agaagaggaagaagaagaagaagctttggggtgtgagagagtgggagctttctctctccacttcgtctccattatttggggattattttttatttttaat  20353900                                          <-------TEIL                                      <---------YAB1                                    --------->AHL20(2)                                    <---------AHL20(2)                                   <---------YAB1                                   --------->ICU4                                 <---------ICU4                                --------->ICU4                               ------->TEIL                                <---------AHL20(2)                           <-----------GT1    <----        ---------->ID1          --------->AHL20(2)                 ----------->GT1              <----   <---------MYB52(1)           <---------ATHB51                 ---------->DOF2             <------- ->AHL20(2)                   --------->YAB1                  <---------HSFB2a(2)      <-----------GT1 --AHL20(2)          <---------------AtSPL8                   --------->HSFB2a(2) <----------DOF2   - ---------GT1        --------------->AtSPL8            <-----------GT1    ----------->GT1  <---------At4g35610   tttctgttttgtcttcttatatttatgtacaaaaataattaatattcatgttttttttttcttactagaaagtaaaatgtaactctttttttctgctttc  20354000                                                      ------>ZmHOX2a(2)                                                    --------->AGP1                                                    --------->ARR11(3)                                                    --------->ARR14(2)                               <---------ANAC58     <---------ARR14(2)                       <-----------GT1              <---------AGP1                      --------->ZAT14               <---------ARR11(3)                      <---------ZAT14 <----------DOF2--------->GLK1(1)                     <----------DOF2========================HOX2a_HOX2a      --------->YAB1 -----ANAC58         <---------DAG2 =========================HOX2a_HOX2a <---------AHL20(2)      ---- -----ANAC58        --------->ANAC46------>ZmHOX2a(1)<------ZmHOX2a(2)   --------->AHL20(2)     <---- ---DOF2          <-----------GT1---------->ID1    <---------At4g35610   <---------YAB1 --------->AHL20(2) --------->ID1  <-----------GT1<---------ANAC58    <---------CCA1(2)--------->ICU4      <---------AHL20(2)   ttgtctccatcaatgtttttacactttacagtttcgtcctctttattttcttcagatctctattttagcaatgttttaattagaaaacaataaaatcaac  20354100                                  <----------DOF2                               --------->AHL20(2)                              ------>MYB83                               <---------TOE2(3)                              ------>MYB46(1)                       <---------MYB46(3)                              -------->P --------->HSFB2a(2)  --------->TOE2(3) <---------AHL20(2)                            <---------MYB46(2)                --------->YAB1   --------->ICU4                           <---------ANAC58                  ----------------->AGL1                           <---------ANAC58                  ----------------->AG<---------AHL20(2)                    <---------ZAT18      <---------HSFB2a(2)<-----------------AGL1      ---------->ID1                   <------ZmHOX2a(1)  <-----------GT1       <-----------------AG<---------AHL20(1)  < ----->TOE2(3)<---------ZAT6<---------MYB59                <-----------GT1----------->GT1         --- -----ICU4    <---------REM1(1)   <---------DAG2       --------->GLK1(2) <---------TOE1(3)        ---   attatccatttctatagtgtaggacacttgcctacccttttttcgagataagttgagaatttaaccatattggttagggtaattttttttgtcttaaacc  20354200                                             --------->ANAC58 <---------AHL20(2)                                     <------ZmHOX2a(2)  <---------TOE1(2)                                     =========================HOX2a_HOX2a                                 <------MYB83--------->ANAC46 --------->YAB1                                 <------MYB46(1)       ------>ZmHOX2a(1)             <---------ICU4                               <--------P    --------->ANAC55(2)             --------->LBD16       --                              <---------ANAC58        --------->TOE1(2)     --------->ANAC58       <- ---------ATHB12              <---------ANAC58<---------MYB52(2)            --------->ANAC58       <- --->MYB46(1)                --------->ATHB12--------->ANAC58 --------->AHL20(2)     --------->ATHB12 --->MYB83 ----------->GT1   <---------MYB46(3) <-----------GT1            <---------LBD16         --   aaatcactaagcatagataatatgaacaaattggttgggatcatttcaagtaacctcctacgaattatatgtatagacccgcataaatgatttcgaacta  20354300                                                                                            ---------                                                                                        --------->ALFIN1           <---------GLK1(2)                <---------ANAC55(2)                      --------->DAG2   <----------DOF2                          --------->ANAC55(2)                   --------->TOE2(3)   <---------DAG2                     --------->ICU4                             ----------------->AG ------->ZAT18                        <---------YAB1                        --------->TOE1(3) --------ZAT18                --------->LBD16                               --------->TOE2(3) --------ZAT14               <---------ANAC46                            <---------CCA1(2) <--------P ------->ZAT14              ------>ZmHOX2a(2)                   <-----------GT1  ----------------->AGL1   gtgcacttttttggattctaacatttttgatccgtagattattattaagtaactcacaatagtttataacttcttataccttaacctaaggtggtaagtg  20354400  Previous    Next  AGI:  At5g49980.1    Description:  AFB5 (AUXIN F-BOX PROTEIN 5); ubiquitin-protein ligase. Identical to F-box/LRR-repeat protein At5g49980 [Arabidopsis Thaliana] (GB:Q9LTX2;GB:Q56YW2); similar to F-box family protein (FBX14) [Arabidopsis thaliana] (TAIR:AT4G24390.1); similar to F-box family protein (FBX14) [Arabidopsis thaliana] (TAIR:AT4G24390.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61641.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80598.1); similar to F-box containing protein TIR1 [Populus tremula x Populus tremuloides] (GB:AAK16647.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101) Range:  from: 20351190    to: 20353891    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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