Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        <---------At4g35610                      --------->At4g35610                                                     <------                    <---------HSFB2a(2)                           ----------->GT1             -------                    --------->HSFB2a(2)                          --------->DAG2            <---------At4g35610 -->LBD16     <---------ARR11(3)                    <------ZmHOX2a(1)                     <---------- ->LBD16      --------->ARR11(3)                  <---------TOE2(3)----------->GT1  --------->At4g35610   aatagtggctgtagaagctcttccagatgaagagactggccttgaactgaatgaggaaaacattgaaaaggttaaattttggtattagctctatgctgct  20334200                                                   <---------AHL20(1)                                                   --------->AHL20(2)                                                   <---------ARR11(3)                                                   --------->ARR11(3)    <----------DOF2                                --------->AHL20(1)                             <-- <---------ARR11(3)                                <---------AHL20(2)    <---------GLK1(1)        --- --------->ARR11(3)         <---------ATHB12  --------->ZAT18     --------->HSFB2a(2)          ------ ---At4g35610         ---------->ID1       <---------ANAC58       <---------HSFB2a(2)      --------->YAB1 -->At4g35610       <---------MYB46(3)     <---------ANAC46     --------->At4g35610  --------->ANAC55(2) -RAV1(1)   <-----------RAV1(1)            <---------ANAC58    --------->ALFIN1      <---------ANAC55(2)   taagttctttgcatatgtgggtttgttctaatcacttactcaatggtgtgcaatatattgtttaggtgctggaagaaatcaggccttacttaatcggaac  20334300                ------>ZmHOX2a(2)              --------->CCA1(2)           --------->YAB1              --------->ARR11(3)       --------->YAB1              --------->ZAT2              <---------ARR11(3)      <---------ATHB12             <---------At4g35610           <----------DOF2       --------->CCA1(2)                 --------->At4g35610           ----          <---------ANAC58       =================================HOX2a_HOX2a<---------YAB1<---------At4g35610        ------>ZmHOX2a(2)        <------ZmHOX2a(2)                 <---------ZAT2    <---------ANAC58 --------->At4g35610            --------->ARR11(3)          <---------ARR14(2)       <---------ANAC58 -------At4g35610               --------->ARR14(2)          --------->ARR14(2)       <---------ANAC46 ------>At4g35610               <---------ARR11(3)         <------ZmHOX2a(1) ----------->HVH21<------ ---->DOF2<---------ANAC58      <---------ARR14(2) <---------ICU4  ----------->RAV1(2) <---------REM1(1)   agcagatggatcgcttgatctagtggagattgaagatccaatcgtgaagataagaatcacaggacctgcagctggagtcatgacagttcgtgtagcagtc  20334400                                 --------->ZAT2                                 --------->At4g35610                                 <---------At4g35610                        <---------ATHB12                 --------->HSFB2a(1)                 <---------HSFB2a(1)                 --------->HSFC1(2)        --------->MYB52(1)--------->WOX13(1)                                       --------->At4g35610 ----->WOX13(1)  <---------HSFC1(2)<---------MYB46(3)                     <----------DOF2         <-- -----HVH21  ----------->GT1     <---------ZAT2          --------->MYB46(3)        <---------At4g35610   actcagaaactaagagagaaaattccatcaatcgcagctgttcaacttatatagaaacaacaactcttcttgtatgctttgtattagctcccttgtatag  20334500                                                                                                  <--              --------->ANAC55(2)                                                                 <--              <---------ANAC55(1)                                                           ---------              <---------ANAC46                                                             <---------YAB1              <---------ANAC55(2)                                                       ------>ZmHOX2a(1)          <---------GLK1(2)                                                             --------->ICU4     <---------AtLEC2                                                                   <---------YAB1   <---------ANAC46                        ------>ZmHOX2a(1)                      --------->DAG2<---- -------MYB46(3)                        ---------->ID1                           ---------->DOF2<----   ttgttgtgcatagattatgtgttttgttgacatttgctatttgtcctcaaataagttttcaacatttttgttttacttagaaaaaaagtccttattattt  20334600     <---------ZAT14                            <---------MYB52(1)     <---------At4g35610                        <---------ARR14(2)                                  <     --------->At4g35610                        --------->ARR14(2)                                  - -------ANAC58                                 <---------RAP2.6(3)    --------->At4g35610       ----- -------ANAC58                         <---------ICU4         <<<<<<<<<TBF1             --------->YAB1 >AHL20(2)                            --------->ICU4      ------>ZmHOX2a(1)     ------>ZmHOX2a(1)  <- -----AHL20(2)                 *TSS<---------YAB1<---------RVE1(1) --------------------->WRI1  <----- -------GT1       <---------AHL20(2)--------->YAB1    <-----------GT1 <---------At4g35610      <-----   acttgagagcagagacttatttgattcttccatcgttttcataatgagccgatatttctccttcttcttcttagctctcttcctccattatcgtattatc  20334700 <---------ANAC58 <---------ANAC58--------->ARR14(2)                                                --------->LBD16 ---------HSFC1(2)      --------->At4g35610           ------>ZmHOX2a(1)            ------>NtERF2 -------->HSFC1(2)      <---------At4g35610       --------->ARR14(2)              --------->DEAR3(1) ---->YAB1       <---------ARR14(2)             --------->HSFB2a(1)               --------->ANAC46 --------TOE1(2)<------ZmHOX2a(1)          --------->DEAR3(2)           <---------ATHB12 ----TOE2(3)  <---------TOE2(2)           <---------DOF5.7(2)        <---------ALFIN1 ----YAB1     <---------TOE1(2)         --------->DOF5.7(2)       <-----------GT1 <---------ALFIN1   gtagcttctccattcgaaggatttgatgctgaagaagacgacgttaccgacgattcctctcaccttcttcaccactcactccctccgcctcttctcactc  20334800                                      --------->HSFC1(2)                                      <---------HSFC1(2)                                   <------NtERF2                                  --------->LBD16                                 --------->RAP2.6(2)                                <---------LBD16                                --------->ATERF1(1)                                <------NtERF2                               ------>NtERF2                               <---------ATERF1(1)                              --------->ARR14(2)                                             --------                              <---------ARR14(2)                                   ------>ZmHOX2a(2)                            --------->LBD16          ----------->GT1              <------ZmHOX2a(2)                          ------>ZmHOX2a(2)      --------->DEAR3(1)              --------->AGP1                          <---------LBD16      --------->At4g35610               --------->ARR11(3)                         <------ZmHOX2a(2)     ------>NtERF2                     <---------ARR14(2)                        <---------ARR14(2)     <---------At4g35610               --------->ARR14(2)                   <------ZmHOX2a(2)  --------->HSFB2a(1)        ------>ZmHOX2a(2)--------->GLK1(1)                  <---------ARR14(2)<---------ARR14(2)    <---------ARR14(2)     <---------ARR11(3)                  --------->ARR14(2)--------->ARR14(2)    --------->ARR14(2)    --------->At4g35610      --------->YAB1    --------->ARR14(2)     --------->LBD16  <------ZmHOX2a(2)<---------AGP1    <-      <---------ICU4  --------->LBD16 <---------HSFB2a(1)<---------GLK1(1)      <---------CCA1(2)  --   agtctcactcatcactctccgatcccgatccggagccggaaccttcttccgccgaatgtaaatccgatctcatcactgaatcagatctcgagcatcaatc  20334900                                                                                             --------                                                                    <---------TOE2(3)        -------- ->WOX13(1)                                                 --------->MYB52(1)      ------->TEIL --------ARR14(2)   --------->REM1(1)                       -------->P             <---------GLK1(2) ------->ARR14(2)   --------->ANAC46                    <------ZmHOX2a(1)          <---------CCA1(2)   cgattcgaaaactccctcgtctacaccatttgagtactgggacgaagacgagttcgaaggactaccagttgagatagagacacttgaatctccattgatt  20335000                                    ------>ZmHOX2a(2)                                   --------->GLK1(1)                                   <------ZmHOX2a(2)                                  <---------ARR14(2)                                  --------->ARR14(2)                                  <-----------ARR10                                  <---------ARR11(3)                                  --------->ARR11(3)                                  <---------AGP1                                  --------->AGP1                                 <---------CCA1(2)                      --------->YAB1             <-     --------->ANAC58        ------>NtERF2                              -------->HAHB4            <--     --------->ANAC46       --------->ANAC46                           <---------ATHB12           <--     --------->ANAC58       --------->ANAC58          <---------At4g35610                      <-----   --------->MYB52(1)  ---------->DOF2                --------->At4g35610                    -------- ->ATHB12            ------>ZmHOX2a(2)          <---------At4g35610    --------->ICU4  >>>>>>>>>TBF1< ->YAB1  --------->GLK1(1)  --------->ANAC58    --------->At4g35610  --------->YAB1 >>>>>>>>>TBF1----   acagaaaacggaactcatgctgatccaaagacgccagatctcaagacttcatcggaagctcaaggagacactaatgatcaaacgaagaagaagaagtcgt  20335100  Previous    Next  AGI:  At5g49940.1    Description:  NFU2 (NFU domain protein 2). Identical to NifU-like protein 2, chloroplast precursor (NIFU2) [Arabidopsis Thaliana] (GB:Q93W20;GB:Q9LTX6); similar to NFU3 (NFU domain protein 3) [Arabidopsis thaliana] (TAIR:AT4G25910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46985.1); contains InterPro domain NIF system FeS cluster assembly, NifU, C-terminal; (InterPro:IPR001075) Range:  from: 20332624    to: 20334626    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g49945.1    Description:  Identical to Uncharacterized protein At5g49945 precursor [Arabidopsis Thaliana] (GB:Q94CC0;GB:Q9LTX6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24330.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63262.1); contains InterPro domain Protein of unknown function DUF1682 (InterPro:IPR012879) Range:  from: 20334631    to: 20337056    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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