Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                           <---------DAG2                                                                                           <---------                                                                                     --------->ATHB12                                                                                     --------->YAB1                                                                                     <---------ICU4               ------>ZmHOX2a(1)             <-----------GT1                        <---------ATHB12   ------>ZmHOX2a(1)   ---------->DOF2  <---------ANAC46                            --------->ICU4 -->ZmHOX2a(1)--------->TOE2(3)  <-----------RAV1(2)                            --------->AHL20(2)   tagtcctgatatgtttcctcaacttcaaagtaaacccagatggagtattactcttatccctacacaaatttgtgagagaaaaaaaaatcattactttact  20329600                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                                    ---------->DOF2                                                                               <---------------AGL15                                            <<<<<<<GRF7                        --------------->AGL15                                          ----------->HVH21                   ----------------->AGL1                                         <---------MYB59 <---------ANAC46     ----------------->AG                                        ----------->RAV1(2)                   ----------------->AGL2    --------->ANAC46 --------->GLK1(2)<-----------GT1 <---------AtMYB61       <-----------------AGL2   --------->LBD16   <---------ARR11(3) <---------At4g35610                   ----------------->AGL3 ----GT1             --------->ARR11(3) --------->ANAC55(2)                <----------DOF2 -DOF2     ---------->DOF2  --------->CCA1(2)     --------->At4g35610   <---------ALFIN1   acttccccaaaacaaaagctcaaaatctagagatgggtttttacctgacataagctgtggtatgtaaacgaacaccactttccattaaaagcaaaacttt  20329700                                                   --------->ANAC46                                --            --------->GLK1(2)                     <-------TEIL                                     <-           <---------ARR14(2)                   --------->ARR14(2)                        --------->TOE2(3)           --------->ARR14(2)                   <---------ARR14(2)                        --------->TOE1(3)           <---------GLK1(2)         <---------ARR11(3)                       --------->YAB1 --------  <----------DOF2                    --------->ARR11(3)        --------->ARR11(3)       <------------   ctcactttcaccagattctgtgataccgctactattcaagagcttgaacatatacgtctgtagaagaaattggagcaaaatcaaaacataaaccctaatg  20329800                      --------->ARR14(2)                      <---------ARR14(2)                            --------->YAB1 ------->GLK1(1)  --------->LBD16                              --------->CCA1(2) --------GLK1(1)<-----------RAV1(2)                           <---------ARR11(3) ->MYB52(1)   ------->TEIL        <---------YAB1              --------->ARR11(3) -----AG   <---------ATHB12    <----------DOF2     <-----------GT1 <---------YAB1   gaaatcgaatcaaatgaatcaggggatttgaagcttttcattgtagaaatttgttaccttgggagatatatcatagacgttggagcatctcataccgatt  20329900                                   <---------ANAC46                                 <------NtERF2                                 ------>NtERF2                               --------->SPL7                             <-----------HVH21                             <---------SPL7                            --------->bZIP60(2)                            --------->DEAR3(1)                            <---------bZIP60(1)                            --------->bZIP60(1)                            <---------TGA1a                            <---------O2                            --------->O2                            --------->TGA1a                           --------->ATERF1(1)                           <------NtERF2                          ------>NtERF2                          <---------ATERF1(1)                         --------->DEAR3(1)                         <---------DEAR3(1)                         ----------->HVH21                        --------->ATERF1(1)                        --------->RAP2.3(1)                        <------NtERF2                       <---------RAP2.6(1)                       <---------RRTF1(1)                       <---------RAP2.3(1)                       <---------ERF1                       <---------DEAR4(2)                  <---------ARR11(1)                       <---------ATERF1(1)                 <-----------ARR10                      <---------RAP2.3(2)                  <---------ARR14(2)                      <---------RAP2.3(3)                  <---------ARR11(3)                      --------->DEAR3(1)                   --------->ARR14(2)                      <---------DEAR3(1)                   --------->ARR11(3)                      --------->ATERF1(2)                 <---------ARR14(1)     --------->ANAC55(2)                      <---------ATERF1(2)                 <---------CCA1(2)      <---------ANAC55(2)                     <---------ABI4(1)               --------->REM1(1)           <---------ANAC58                     --------->ATERF1(1)          --------->TOE1(3)              <---------ANAC58                     <---------At4g35610        --------->SPL7               <---------HSFC1(2)                     <---------LBD16            <---------TOE1(2)            --------->HSFB2a(1)                    <---------RAP2.3(1)         ------->TEIL                 <---------HSFB2a(1)                    <---------ATERF1(1)      <---------ANAC58                --------->HSFC1(2)                   <---------DEAR3(1)        <---------ANAC58--------->TOE2(3)   <---------ANAC46       --------->ANAC58------>NtERF2        --------------->AtSPL8      --------->HSFB2a(2)       --------->ANAC58<---------ORA47(2)   --------------->AtSPL3      <---------HSFB2a(2)   aatcgcttcaagcacttgacttcggcggcgacgtccgccgtgttcattcgtaccttcaccatatcttagtctctctcgaaatttcgtgattcagtgtcga  20330000                                                <---------DEAR3(1)                                       <---------YAB1    --------->ZAT2                                      <---------AHL20(2) <---------ZAT2 <------ZmHOX2a(1)                                  *TSS--------->AHL20(2) --------->At4g35610                   <-----                   <---------MYB52(1)--------->AHL20(2)  <---------At4g35610   <------ZmHOX2a(1) <---       ----------->GT1   ---------->DOF2    --------->MYB59       ---------->DOF2              ------   atcgaagaaaggttttaatctgtttgtcaaagttagaaattaaaattcggtctgtgctaagctgtgagaaaagaggaagaaggagaagagaaatttgtga  20330100                     <---------HSFB2a(2)                     --------->HSFB2a(2)                  <---------RAP2.6(3)                  --------->YAB1                  ------>NtERF2                        <--------HAHB4            <-----------GT1                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->ATHB12       <---------ICU4         --------->ALFIN1                              <---------ICU4      --------->YAB1         <-----------RAV1(1)                          <---------YAB1      <---------ATHB12 ----ZAT18       --------->DEAR3(1)           ---------->DOF2            ------>MYB83 ------At4g35610--------->DEAR3(2)         --------->AHL20(2)            ------>MYB46(1)<----------DOF2 --->ZAT18<-------GAMYB          ---------->DOF2      <------ZmHOX2a(2) --------->WOX13(1)      <----   gctattcatgtgtgttgggccgactagaagggcctataagcccaatataaaagacgatcattagttatctaaaccaatcaaaattacatgcttttttaaa  20330200                                                                    <---------AHL20(2)                                                            <---------WOX13(1)                                                          <---------ICU4  <--------P    <---------------AGL15                     --------->ATHB12  <---------MYB52(1)            <---------AHL20(2)       <---------YAB1 <---------MYB52(1)             --------->AHL20(2)     --------->YAB1 -------GT1     --------------->AGL15                 ----------->GT1           <-----------GT1  <---   accggttagtctaatacactaattagagaagtttttaatttgtctcagtttgaatattgataattgataaataatccacatataacagttgtatgtatta  20330300                                                                                        <---------AHL20(2)                                                                                      xxxxxxxxxxxxxxx                                                                                     ================                          --------->YAB1                                             --------------->AGL15                     <---------At4g35610                                             <---------------AGL15                     --------->At4g35610 --------->AHL20(1)                        xxxxxxxxxxxxxxxxxx                    ----------->RAV1(1)  <---------AHL20(1)                     --------->At4g35610            <---------ARR11(3)           <---------ARR11(3)                     <---------At4g35610            --------->ARR11(3)           --------->ARR11(3)                     --------->ZAT2         --------->AHL20(2)    ----------->GT1                                  <---------ZAT2         <---------AHL20(2)   --------->DAG2         ------>ZmHOX2a(1)     <---------ZAT6       ----- ------YAB1 <-----------ARR10---------->DOF2    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ================   tttatgaacaataaaatctatgcagcaaaaataaagtaactaaaatattcaactcctattcaagaatcaaattgatagagtaagctgcaatttatggtga  20330400                                                    --------------->AGL15                                                    --------->ANAC46                                                   ----------------->AGL2                                                   <-----------------AGL1                                        --------->ARR11(3)                                        <---------ARR11(3)                                        <---------AHL20(1)                                        --------->AHL20(1)                                        <---------AHL20(2)         <---------AHL20(2)                                   <---------TOE2(3)<---------------AGL15                             --------->AHL20(1)    <-----------------AG                            --------->ATHB51       ----------------->AG                            <---------ICU4         <-----------------AGL3                            <---------AHL20(2)     ----------------->AGL1             <---------TOE2(3)  <---------AHL20(2) ----------------->AGL3             --------->DAG2 --------->AHL20(2)     <-----------------AGL2<---------YAB1         --------->YAB1    --------->ICU4    --------->AHL20(2)   <---------AHL20(1)      <-----------GT1      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------AHL20(2) xxxxxxx>smallRNA(si3)   <---------ICU4 --------->AHL20(2)    >>>>>>>>>GT-1 ===================================================================MADS_MADS                     --- xxxxx>smallRNA(si3)    ------>ZmHOX2a(1)<---------AHL20(2)----------->GT1                     ------ ----->DOF2  <---------TOE1(3)<---------YAB1 <---------AHL20(2)   --------->AHL20(2)           <----- ====================================================================MADS_MADS         <---------AHL20(2)   aagtagttttaccataaggttttctcctaattattttaagaatatatttatttcccacaattggttaataaaattgtgaatgaatacattttttttgtct  20330500  Previous    Next  AGI:  At5g49930.1    Description:  EMB1441 (EMBRYO DEFECTIVE 1441); nucleic acid binding. similar to hypothetical protein OsI_037493 [Oryza sativa (indica cultivar-group)] (GB:EAY83534.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44957.1); similar to hypothetical protein OsJ_035096 [Oryza sativa (japonica cultivar-group)] (GB:EAZ20887.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Protein of unknown function DUF814 (InterPro:IPR008532) Range:  from: 20325259    to: 20330034    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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