Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ANAC58      --------->ANAC58                                       <---------ANAC55(2)                  ---    --------->MYB52(1)                                       --------->ANAC58                    ---- <---------------AtSPL8                                      --------->ANAC55(2)      --------->ANAC58 --------->DOF2                                      <------ZmHOX2a(1)                --------->ANAC58 ----->GT1                                          <----------ID1       <----------DOF2     -------- --->LBD16                      ---------->DOF2   --------->DAG2   <---------ICU4----------->HVH21--- ---HSFB2a(2)           --------->ZAT18          ---------->DOF2  <---------ATHB12    --------->ANAC55(2) -->HSFB2a(2)        <---------ANAC46      ----------->GT1   --------->ANAC58    <----------ID1  <---   aaaaaagaacgaaacatcaagttatgtgcagaagaaaagagaagagggagaaaaaggacagactcgtaatcaaggctttcgatgggacaagtattagctc  20309200                                                                                         <---------ARR11(3)                                                                    <-------TEIL         --------->ARR11(3)                                                                   <------ZmHOX2a(2)    --------->GLK1(1)                                                                   ==================================                                                                  --------->AGP1        <---------RVE1(1)                                                                  <---------ARR14(2)    <---------CCA1(1)                                                                  --------->ARR14(2)    <---------GLK1(1)          ------>ZmHOX2a(2)                                      --------->At4g35610    --------->RVE1(1)          =================================HOX2a_HOX2a       ----------->RAV1(1)       <---------ARR11(3)         ==================================HOX2a_HOX2a      ----------->HVH21          --------->ARR14(2)         <------ZmHOX2a(2)                                  --------->ANAC46           --------->ARR11(3) -------->RAV1(1)                                           <---------ETT(1)           <---------ARR14(2) ------->HVH21                                           --------->ARR14(2)          --------->LBD16 ->At4g35610                                             <---------ARR14(2)    <---------GLK1(2)  <-- --->NtERF2                         ------>ZmHOX2a(1)   <---------GLK1(1)   --------->HSFB2a(2)   --- ------ETT(1)             <----------DOF2            <---------ETT(2)       <---------HSFB2a(2) -----   cgacaatagcgatctgagaagttgtgttctttcgattcctagcgagaagaggctgtcgaaatccgacagatccatcgtctagaatcccagatatcttcct  20309300                                                                                ------>ZmHOX2a(2)                                                                               <------ZmHOX2a(2)                                                                              <---------ARR14(2)                                                                              --------->ARR14(3)                                                                              <---------ARR14(3)                                                                        ==============HOX2a_HOX2a                                                                        ------>ZmHOX2a(1)          ---------->DOF2                         <---------ANAC58      ===============HOX2a_HOX2a  <       --------->AtLEC2                         =================HOX2a_HOX2a  <---------ARR11(3)   <-    ----------------->AGL3           <---------YAB1       =====================HOX2a_HOX2a         <- ==HOX2a_HOX2a             --------->TOE2(3)    ------>ZmHOX2a(1)<---------CCA1(2)            ------- -------HSFB2a(2)    ------>ZmHOX2a(1)<---------ICU4      <------ZmHOX2a(2)   --------->ARR14(2)   -- ------>HSFB2a(2) ------>ZmHOX2a(1)  --------->ICU4       <---------ATHB12    --------->ARR11(3)   -- ->ZmHOX2a(1)    <---------ALFIN1  --------->YAB1 <---------ANAC58     --------->ANAC46     <--------   ctcgaaaccatgtaaagctcctccttcaacctctatatcatgatggtctccttcgtgccgatcatccatctctcctccacgatcttgtttttttaagaaa  20309400                                                                                   <---------ICU4                                                                                   --------->YAB1                                                                             --------->HSFB2a(2)                                                                             ------>ZmHOX2a(1)                                                                         --------->GLK1(2)                                                                 --------->ZAT18  <---------ATHB12 ---------AHL20(2)                    ----------->RAV1(1)  --------->ATHB12  --------->LBD16 --------AHL20(1)                  --------->ANAC58       <---------YAB1<---------GLK1(2) --------AHL20(2)                  --------->ANAC58       <---------AHL20(2) <---------HSFB2a(2) -->AHL20(2)                     ---------->DOF2          --------->AHL20(2)<---------LBD16 ------->AHL20(2)          --------->At4g35610     --------->ANAC58 --------->ANAC58 ------->AHL20(1)       <------ZmHOX2a(2)        ---------->DOF2 <---------ZAT18  --------->ICU4   -- -TOE2(3)        <---------GLK1(1) --------->ANAC46--------->ANAC58 --------->ANAC58    ------->TEIL-   ataaaattgtttgttttcgatttccgatcagattacaaagccacagaaatggaaagctatataattgggcacgagattcctggaatcatgaacctctcgc  20309500              ---------->DOF2         ----------->GT1      --------->At4g35610                                                   *TSS      <---------At4g35610                                                <---------ANAC46       -----  --------->ANAC58         <---------AHL20(2)     ---------->ID1    <---------ANAC46    <------ZmHOX2a(1)  --------->ANAC58         <---------YAB1---------->ID1          <------MYB83           ============= ------->WRKY18(1)      <---------AHL20(2) <----------DOF2       <------MYB46(1)     <-----------RAV1(2) --------->DOF2--------->DAG2           <-----------GT1         <---------AtMYB61  <-----------HVH21   gctcaagcagatgctaaaaagtcgatttttttattgtttttttttcttttttgtttttttttgagggaggtcgtagagtggtatgggtcaggaattttgt  20309600            <---------------AGL15            --------------->AGL15            ------>ZmHOX2a(1)                                                                --------           <-----------------AGL2                                                     ----------->GT1           ----------------->AGL3                           <------ZmHOX2a(1)        --------->DAG2           <-----------------AGL1                          ----------->GT1      --------->AHL20(2)           <---------MYB59                            --------->YAB1         --------->AHL20(2)  <---------AHL20(2)                           --------->ICU4  --------->ARR11(3)   ---------->DOF2 <---------AHL20(2)                            <---------YAB1  <---------ARR11(3)--------->AHL20(2) ----->ID1------>ZmHOX2a(2)             <----------DOF2   <---------TOE2(3) <---------AHL20(2) ================HOX2a_HOX2a        <----------DOF2  <---------YAB1         --------->AHL20(2)   ttttttatttgatcctaatttaggcaaaactaaactctctttctttgttatgattttcataaggatatattcttctaaataaataaaaaagtcaataaca  20309700                               --------->YAB1                              <---------YAB1                            --------->YAB1                            <---------ICU4                            -------->HAHB4                           --------->ICU4                           <---------ATHB51                --------->AHL20(1)                                                           --------                <---------AHL20(2)                                                        <---------LBD16                <---------AHL20(1)                                                    <---------AHL20(2)                --------->AHL20(2)                                                <---------RVE1(1)               --------->AHL20(2)       --------->YAB1     ----------->RAV1(1)   <---------ARR11(3) ->YAB1        <---------AHL20(2)      <---------YAB1 <-----------GT1        --------->YAB1 ---------   aaaaaaaacttgcataaataaattatctaattatgaaaattttcatagtattgtttttgcccaacaaatttgtatacaatcgtgatattttatgggggaa  20309800                                                                                                  <--                                                                                               ------                       <---------AHL20(2)      <---------ICU4                                --------                     <---------AHL20(2)        --------->AHL20(2)                            --------                  <---------AHL20(1)          --------->AHL20(2)                            ---------                  --------->AHL20(1)          <---------AHL20(2)                          <---------AHL20(2) --->GT1         <---------AHL20(2)         --------->YAB1              <-----------HVH21 --------->AHL20(2) -->GT1      --------->AHL20(2)         --------->YAB1         <-----------GT1          <---------AHL20(2)   aaaactatttgttttttatatatattattttgaattgatttttcataaataatttctctcaaattttacaactgtgtccgatatacttatataaaaataa  20309900         <---------AHL20(2)                                              <-----------GT1    ------->TEIL      ------>ZmHOX2a(2)                              <---------ARR11(3) -------AHL20(1)    --------->ARR11(3)                               --------->ARR11(3) --->AHL20(2)       <---------ARR11(3)                     <---------RVE1(1)                  <------ ->AHL20(2)     --------->ANAC55(2)                        <---------CCA1(1)              <---------AHL20(2) ->AHL20(1)   <-----------GT1         <---------YAB1      <---------ARR11(3)      <---------TGA1a >YAB1 <---------AHL20(2)  ---------->DOF2                --------->ARR11(3)      --------->TGA1a   tatatgtatatttttttcacatgatcttgtaaagtttgttttgattctaactcaattacagatatttttgaaatcttacttctcatgtgtgtttatttag  20310000                                                                   --------->ANAC58                                                                   --------->ANAC58                                                ----------------->AGL1                                    --------->ATHB12               --------->ANAC46                                    <---------ICU4         --------->GLK1(1)                   ----------->GT1 --------->ICU4          <---------GLK1(1)     --------->CCA1(2)             <---------YAB1<---------------AGL15    --------->ARR14(2)           --------->YAB1 ----------------->AG    <---------ARR11(3)       <---------AHL20(2) ----------------->AGL2 --------->HSFB2a(2)        --------->AHL20(2)  <-----------------AGL2 <---------HSFB2a(2)   --------->AHL20(2)       <-----------------AGL3     ------>MYB46(1) ---AHL20(2)      ---------->ID1<---------YAB1  ----------------->AGL3     ------>MYB83      <-------   tttctagatatgaaaattttgttgttaaaattttataatgatttttagttcccaaaactggatttcaacaagaaaccaaatgagcccaaactagggtaga  20310100  Previous    Next  AGI:  At5g49890.1    Description:  CLC-C (chloride channel C); anion channel/ voltage-gated chloride channel. Identical to Chloride channel protein CLC-c (CLC-C) [Arabidopsis Thaliana] (GB:Q96282;GB:O04753;GB:O04837); similar to chloride channel-like (CLC) protein, putative [Arabidopsis thaliana] (TAIR:AT5G33280.1); similar to ATCLC-A (CHLORIDE CHANNEL A), anion channel/ voltage-gated chloride channel [Arabidopsis thaliana] (TAIR:AT5G40890.1); similar to CLC-B (chloride channel protein B), anion channel/ voltage-gated chloride channel [Arabidopsis thaliana] (TAIR:AT3G27170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46902.1); similar to chloride channel Stc Range:  from: 20305345    to: 20309576    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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