Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                =======                                                                                              ------>ZmHOX2a(2)                                               --------->At4g35610                           ========                                            <------ZmHOX2a(2)                                --------                                           <---------ARR11(3)                                <------ZmHOX2a(2)                                           --------->ARR14(2)               --------->LBD16 ---------                                           <---------ARR14(2)            --------->MYB52(1) <--------                                        --------->HSFB2a(2)             <-----------GT1     ---------                                        <---------HSFB2a(2)      <---------MYB52(1)         <--------                                   <---------MYB46(3)           --------->LBD16             ---------                                 <---------At4g35610           --------->ATERF1(2)          <--------                              <---------At5g28300              <---------ATERF1(2)          <-------- ---------ANAC58    --------->TOE2(3)--------->ARR14(2)       <---------LBD16              <---------CCA1(2) ---------ANAC58    --------->TOE1(3)<---------ARR14(2)  ----------->HVH21<---------LBD16 -----------   ttgcctgtcttctcagagaaaacctaaaatttcacagcggttccagatcagcaatcccagtgatgccggtaatgttaccggagaattaagcacagatctg  20272100            <-------TEIL  <---------At4g35610  <---------ZAT2                                                                                  <--  --------->At4g35610  <---------ARR14(2)                                                         <--  --------->GLK1(1)    --------->ARR14(2)                                                       -----  <---------GLK1(1)<---------At4g35610                                                      <-------- =============HOX2a_HOX2a                                                                   <-------- =============HOX2a_HOX2a                                                                   <-------- ->CCA1(2)  <---------LBD16                                                                <---------ZAT2 >AGP1 --------->HSFB2a(2)                                                               <--------P -AGP1 ------>ZmHOX2a(1)                                                                <---------MYB52(1) >ARR11(3) --------->ARR14(1)      <------MYB83                                         --------->At5g28300 -ARR11(3) --------->CCA1(2)       <------MYB46(1)                                     <---------DEAR3(2) >ARR14(2)--------->ARR11(1)      <---------MYB46(3)                                ------->GAMYB<--- -ARR14(2)<---------ARR14(2)     --------->ALFIN1         <--------P               --------->MYB46(3) ---ARR10 --------->ARR14(2)  --------->DAG2          ------>ZmHOX2a(2)          --------->MYB52(1) >ARR10<---------HSFB2a(2)   ---------->DOF2      <---------YAB1-------->P     --------->MYB46(3)<---   agggagctcctagatacggagagcagatagagaaagtgggtagaagaagatgatgatcgagttggcaaccagagcgatttagccaacgacggtagcttgg  20272200                         <-----------GT1   <---------ANAC58    --------->HSFB2a(1)          --------->MYB52(1)   <---------ANAC58    --------->HSFC1(2)           <-----------GT1 --------DOF2          <---------HSFB2a(1)     --------->AHL20(2) -------DAG2           <---------HSFC1(2)      <---------AHL20(2) ----->ID1            ------->TEIL             --------->AHL20(1)                             ------- -ANAC58         --------->MYB52(1)          XXXXXXXXXXXXXXXXXXXX>MIR3933                    -------- -ANAC46--------->At4g35610<---------ANAC58<---------AHL20(2)                                <------- -ANAC58<---------At4g35610<---------ANAC58--------->AHL20(2)                              <---------DOF5.7(2) ------ANAC58   --------->TOE1(2)         --------->AHL20(2)                       <-----------GT1 ------ANAC58  --------->MYB46(3)         <---------ATHB12       *TSS  <-----------GT1     --------->MYB52(1)   ctttttcgtctgcttaaacaaacgaattttcttgttgaaaactaataaataaaataacgactctgggttttttttactggattttttactagtaaacggc  20272300                                          <---------ALFIN1                                 <---------DAG2                          <------NtERF2                                 <----------DOF2                        ------>NtERF2                                --------->TOE2(3)                      --------->ANAC46                            <----------DOF2                            --------->DEAR3(1)                           <---------ANAC58        --------->bZIP60(1) <---------DEAR3(1)                           <---------ANAC58      ------>NtERF2       <---------ATERF1(1)           <-                     --------->ANAC46     --------->REM1(1)         --------->DEAR3(1)           <---                     --------->ANAC58   <-----------HVH21          --------->DEAR3(2)            <---     --------->GLK1(1)    ----------------------->TaNAC69(2)       --------->MYB46(3)        <------- ---->GT1            --------->ANAC58   ------>ZmHOX2a(1)    <---------At4g35610        <---------ANAC58 ->ANAC46           <---------LBD16    --------->TOE1(3)     --------->At4g35610        <---------ANAC58 ---ID1            <---------AtLEC2    --------->TOE2(3)<---------ANAC55(2)     ---------->DOF2  <---   aaaacagaaaccctctcatttgcacggaggctttcctttatccttcacctctgccatcacttgagctaaaccgacgccgttttaaagaatgcttacttta  20272400          ----------->GT1         <---------TOE2(3)      --------->DOF5.7(2)      <---------MYB52(1)                                                                   <---------GLK1(2)     <---------RAP2.6(3)                                                                   --------->ARR14(2)     --------->At5g28300                                                                   <---------ARR14(2)     <-------GAMYB                                                                       --------->LBD16   ----------------->AGL1                                                   <---------ANAC58 -----------CBF                                                  <---------ARR11(3)     --------->HSFB2a(2) ------TOE1(3)                                           ------->GAMYB--------------->AtSPL8 ------TOE2(3)                            <---------CCA1(2)      --------->ARR11(3)     <---------HSFB2a(2) ---DOF2<---------DOF5.7(2)  --------->TOE2(3)        --------->MYB52(1)    <---------ANAC58 ------YAB1    <---------ARR14(2)       --------->YAB1----------->RAV1(1)  <---------At4g35610   agattgccgttaatgtaaatctgagcaaaaacctttgaagaatcatatcatcgagacaacagagagagatgttttgtagcttatccatttccagatttgt  20272500                                                           <---------MYB52(1)                                              --------->GLK1(2)                         --------->ANAC58                      <---------CCA1(2)      <---------GLK1(2)<---------GLK1(2)         --------->ANAC58                 --------->YAB1             <---------At4g35610      ------>ZmHOX2a(1)  --------->ANAC46   <------ZmHOX2a(1)<---------ICU4   <---------TOE1(2)    <-------GAMYB ------>ZmHOX2a(1)------>NtERF2   ctcgaggaagacaataacatcatcatctcttctctctcgcagtttcagattccttctctccgttgattctcctcctcacatccctcttctacgcccttct  20272600                                                                         --------->ATERF1(1)                                                                         <---------ABI4(1)                                                                         <------NtERF2                                                                        <---------ATERF1(1)                                                                        <---------RAP2.6(1)                                                                       --------->ATERF1(2)                                                                       <---------RAP2.3(2)                                                                       <---------RAP2.6(2)                                                                       <---------ANAC58                                                                       <---------DREB2C(2)                                                                       <---------ANAC46                                                                      --------->ATERF1(1)                                                                      <------NtERF2                                                                     <---------ATERF1(1)                                                                    <---------DEAR3(1)                                                                    ----------->HVH21                                                                   --------->ATERF1(1)                                                                  <---------ZAT2                                                                  --------->ZAT2                                                                 --------->ALFIN1                                                              <---------ANAC46                                                              --------->ALFIN1                                                              <---------DEAR3(1)                                                             <------NtERF2                                                             <---------ABI4(1)                                                             --------->ATERF1(1)                                                             --------->At4g35610                                                             <---------LBD16                                                             <---------At4g35610                                                            ------>NtERF2<---------LBD16                                                            <---------RAP2.6(1)                                                            <---------RAP2.3(1)                                                            <---------RRTF1(1)                                                            <---------ERF1                                                            <---------DEAR4(2)                                                            <---------ORA47(2)                                                            <---------ATERF1(1)                                                           <---------RRTF1(2)                                                           <---------RRTF1(3)                                                           --------->ALFIN1                                                           --------->DEAR3(1)                                                           <---------RAP2.3(3)                                                           --------->ATERF1(2)                                                           <---------DEAR3(1)                                                           <---------ATERF1(2)                                                           <---------ANAC46                                                           <---------RAP2.6(2)                                                           <---------RAP2.3(2)                                                          --------->At4g35610                                                          --------->DEAR4(2)                                                          <---------ABI4(1)                                                          --------->ATERF1(1)                                                          <------NtERF2<---------RRTF1(3)                                                          <---------At4g35610                                                          --------->RAP2.3(1)                                                          --------->DREB2C(1)                                                         <---------DEAR4(2)                                                         <---------RRTF1(1)                                                         <---------ERF1<---------RRTF1(2)                                                         <---------ATERF1(1)                                                         <---------RAP2.6(1)                                                         ------>NtERF2<---------ABI4(1)                                                         <---------RAP2.3(1)                                                         <---------ORA47(2)                                                        <---------RAP2.6(2)                                                        --------->ALFIN1<---------ORA47(2)                                                        <---------RAP2.3(2)                                                        <---------RAP2.3(3)                                                        <---------RRTF1(3)                                                        <---------RRTF1(2)          --------->YAB1                                                        --------->ATERF1(2)     <---------YAB1                                                        <---------DEAR3(1)      --------->ICU4                                                        <---------ATERF1(2) <------NtERF2                                                        <---------ANAC46<---------ERF1                                                        --------->DEAR3(1) --------->LBD16                                                       --------->RAP2.3(1)<---------DEAR3(1)                                                       <---------ABI4(1)------>NtERF2 <---------YAB1                                                       <------NtERF2--------->ALFIN1<---------ICU4                                    --------->ARR14(2) --------->ATERF1(1)<---------ANAC46                                 <---------ANAC46    --------->DEAR3(1)<---------RAP2.3(3)                                <-----------------AGL1<---------DEAR4(2)<---------RAP2.3(1)                                <-----------------AGL3<---------RAP2.3(1)<---------At4g35610                                <-----------------AG <---------DEAR3(1)<---------ATERF1(2)                                <------NtERF2        <---------RAP2.3(2)<---------RRTF1(1)                               --------->LBD16      <---------At4g35610<---------ANAC58--------->YAB1                               ------>NtERF2        --------->At4g35610<---------DEAR3(1)                              --------->ANAC46   <---------ZAT14<------NtERF2 <---------At4g35610                             --------->MYB46(3) ------>ZmHOX2a(1)<---------AtMYB61 --------->ICU4   ------->GAMYB             <---------LBD16  ----------->RAV1(2)<---------DEAR3(1)<---------YAB1  <---------ALFIN1------>ZmHOX2a(1) <---------ARR14(2)<---------ATERF1(1)--------->At4g35610   tccaacaccctaatcccttcctcttccttctcccgccgtatttgggactcctgcagcggcggcggcggaggtggcggcggagatgattatgatcacatca  20272700                                       --------->TGA2(2)    --------->TGA2(1)                --------->ANAC55(1)    --------->TGA1a                  --------->ANAC46    <---------TGA1a                  --------->bZIP60(2)    <---------O2                     --------->ANAC58    <---------ANAC46                 --------->ANAC58    <---------TGA2(1)               ------->TEIL    <---------ANAC55(2)        --------->At4g35610    --------->O2------>ZmHOX2a(1) <-------TEIL    --------->bZIP60(1)        <---------At4g35610    <---------bZIP60(2)      <-----------RAV1(2)                                                 ----    >>>>>>>>>>HY5         <---------ZAT2                                                 --------->WOX13(1)    <---------bZIP60(1)   --------->ZAT2                                                ------>ZmHOX2a(2)   <-----------STF1       --------->ZAT14                                              <------ZmHOX2a(2)   ----------->STF1       <---------ZAT14 <---------At4g35610                         --------->ARR11(3) ----------->HVH21        <---------At4g35610                         ------->GAMYB   <---------ARR11(3) ----------->TGA1         --------->At4g35610          >>>>>>>>>>>>>>>>>LFY      --------->TOE1(2) <-   gaagtgacgtcaattgtcctcgttgctctgctcagatgcacgtcatcttctcaaatcgtccattgtctctaacagcaagagaaccagggatctatcaagc  20272800                                                                                       ----------->GT1                                      <-----------GT1                             <---------HSFB2a(2)                               <-----------GT1                                   <---------LBD16    <-----------GT1        <----------DOF2               <----------DOF2        <---------LBD16    -- ------->GT1    --------->AtLEC2  <----------DOF2<---------ARR11(3)    <---------AHL20(2)  ---------- --------MYB52(1)          <---------DAG2    ---------->DOF2           <---------YAB1---------->DOF2   tgttaatttctgttctcaatgcaaaacagctttttactttagaccattcaagctctctcctttacaagggagttttattgaactcgggaaagttaaagga  20272900                        --------->YAB1                       --------->ICU4                       <---------YAB1                     --------->YAB1                    --------->ICU4               --------->YAB1              --------->ICU4            --------->YAB1            <---------ICU4           <---------YAB1 <---------YAB1   --------->YAB1   <---------YAB1   <---------ICU4 --------->YAB1   --------->ARR11(3)  --------->ICU4 --------->ICU4    <---------ARR11(3)           --------->ARR11(3)              <----  <---------YAB1 <---------YAB1   --------->GLK1(1) ----------->GT1                          <------- ------->ICU4 <---------YAB1      <---------GLK1(1)----------->GT1                         <---------ARR14(2) >DOF2     --------->ICU4 --------->ICU4       <------ZmHOX2a(1)<---------ARR11(3)        <------ZmHOX2a(1)   actgatgatgaccatgatgatgatgatgatgatcagaaatctttccctaggaattggaaaattcaaggtcttagaagcgatgaagatggtgaggatgctg  20273000  Previous    Next  AGI:  At5g49830.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10385.1); similar to hypothetical protein OsI_024363 [Oryza sativa (indica cultivar-group)] (GB:EAZ03131.1); similar to expressed protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07222.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23193.1); contains domain PTHR21426 (PTHR21426); contains domain PTHR21426:SF3 (PTHR21426:SF3) Range:  from: 20267712    to: 20272265    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g49840.1    Description:  ATP-dependent Clp protease ATP-binding subunit ClpX, putative. similar to CLPX (Clp protease regulatory subunit X), ATPase [Arabidopsis thaliana] (TAIR:AT5G53350.1); similar to putative ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX) [Oryza sativa (japonica cultivar-group)] (GB:BAD15818.1); contains InterPro domain ATPase AAA-2 (InterPro:IPR013093); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain ClpX, ATPase regulatory subunit; (InterPro:IPR004487) Range:  from: 20272469    to: 20276261    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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