Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->TOE2(3)                    --------->ANAC58                                         --------->ANAC58                  --------->ANAC58        <------ZmHOX2a(1)                --------->ANAC46                  --------->ANAC58      <---------TOE2(3)       <---------YAB1   <-------TEIL                --------->ANAC46       <-- --------------AGL15       <-------TEIL  --------->ANAC58         <------ZmHOX2a(1)   --------->ANAC58 --------GT1        ---------->DOF2 <----------ID1   ---------->DOF2<---------ATERF1(1)       -------   cacatatttaggaaaattcaaaaaaagagttcatcaatggaacaaggcatacatcaaaaggagtctgaggagactccaagctaatagcacgaactgaatt  20266400                <---------HSFC1(2)                --------->MYB46(3)          --------->MYB52(1)                --------->HSFC1(2)         --------->DEAR3(1)           --------->HSFB2a(2)            --------->MYB46(3)     ------->TEIL--------->AtMYB61        --------->DEAR3(2)    <---------CCA1(2)       --------->At4g35610                          --------->WOX13(1)    <---------GLK1(2)       <---------At4g35610------>NtERF2           <------ZmHOX2a(2) -------YAB1    <---------HSFB2a(1)    ---------->DOF2           ----------->RAV1(1) -->GLK1(1)<---------HSFB2a(2)----------->RAV1(1)             --------->ANAC46               --------   cttcttgaatctcccagaaccatcgctctcagcgacatacttaaaccgacggccatcgatttcttcgcaacagatcaatctcagagtcgaatgaagaaat  20266500                                         ------->GAMYB                                      --------->MYB52(1)                                 ====================HOX2a_HOX2a                <------ZmHOX2a(1)<------ZmHOX2a(2)                ========================HOX2a_HOX2a              <---------ANAC46  <---------ARR11(3)                --------->ARR14(2)        <---------AtMYB61       --------->ARR11(3)                <---------ARR14(2)          <------  <---------ARR14(2)           --------->GLK1(1)                ----------->ARR10    ---------->DOF2  --------->GLK1(2)       --------->ALFIN1                    --------->At4g35610 --------->LBD16  --------->ARR14(2)     <------ZmHOX2a(1)    <------ZmHOX2a(1)<------NtERF2     <---------LBD16----- <---------GLK1(2)       ===============HOX2a_HOX2a           <---------At4g35610--------->ANAC46 ->ARR11(3)--------->ALFIN1    <---------GLK1(1)             <---------DEAR3(1) <---------LBD16------   tgagaatctggaggtggaggagagtgaggagggagatcatcaacgggaggagaagcgagagaggcgctgattcggagagtttcacgggaaaggagacgga  20266600                    <---------O2                    --------->At4g35610                    <---------At4g35610                    <---------ZAT2                    <---------ANAC46                   --------->MYB111(1)       --------->ANAC58       --------->ANAC58         <---------ANAC58     <------NtERF2 >>>>>>>GRF7  <---------ANAC46 <-----------HVH21<-----------RAV1(2)     ----------->HVH21 ---SPL7<------NtERF2 --------->ALFIN1 --------->At4g35610                         ------>ZmHOX2a(2) ---->SPL7      <-----------HVH21 --------->ALFIN1                         <---------ATHB12        <- --->MYB52(1)  <---------ZAT6   <---------ANAC58                ----------->GT1 <------ZmHOX2a(1)  --   cggagtcggaggcaatagtgtcaggtggagaatggtgtgtgagcttgacgcttggcattgttgttgttgtaaatctaatgaaggatcgatgaagaaggga  20266700                     <------NtERF2                                                                  <                   <---------ANAC46                                                               <--                   <---------DEAR3(1)                                                             ---                  <---------LBD16                                                             -------                  <---------------------WRI1                                                  <------                <---------DEAR3(1)                                                            -------               <---------LBD16                                                                <------        --------->ALFIN1     --------->TOE1(2)                                             --------->AHL20(2)      <---------ANAC46   --------->ARR14(2)                                                <---------ARR11(3)      <---------ANAC58   <---------ARR14(2)                            *TSS                --------->AHL20(1)      <---------ANAC58  <------ZmHOX2a(1)                            <---------HSFB2a(2)   <---------AHL20(1) --------AHL20(2)--------->LBD16                >>>>>>>>>TBF1   <---------MYB46(3)    ------------>CBF ------->AHL20(2)------>NtERF2     ----------->ARR10     <---------ARR14(2)      <-----------GT1 <---   ttttaatggagtgtctctccggcggaggaaacgagggaagctctgtagaagaagaagcgaaaccagttgttccacaaacaaattcacctccaatatttta  20266800        <-----------GT1       <-----------GT1   <---------YAB1  <---------AHL20(1)  --------->AHL20(1)  <---------AHL20(2) --------->YAB1 --------->AHL20(2)                                     --------->AHL20(2) ---------YAB1                                 ----------->HVH21 -------ICU4                                <---------ARR14(2) ------>YAB1                                --------->ARR14(2)       <---------YAB1 -->AHL20(1)                                <---------ARR11(3)    --------->GLK1(2) ---AHL20(2)                               <---------GLK1(1) --------->YAB1                   <------ -->AHL20(2)                      ----------->RAV1(1)   <---------AHL20(2)             --------->AHL20(2) ---AHL20(1)            <----------DOF2    <---------CCA1(2)--------->AHL20(2)        <---------AHL20(2) ------YAB1     <----------DOF2   <---------ALFIN1      --------->AHL20(1)            --------->AHL20(2)   ttattatatttatctcttcttttattctttttagtcccacagtgtatatctgacaaaataaaataaaaattctgatcaaactagacatttaaaatacttt  20266900                             <---------AHL20(2)                          <---------AHL20(1)                          --------->AHL20(1)                          --------->AHL20(2)                        --------->AHL20(1)                        <---------AHL20(2)                   <---------AHL20(1)                        <---------AHL20(1)                   --------->AHL20(1)                     <---------AHL20(2)                      <---------AHL20(2)    <----------DOF2  --------->AHL20(1)                      --------->AHL20(2)      <---------YAB1 <-----------GT1     --------->AHL20(2)                     --------->AHL20(2)     --------->YAB1 ----DOF2       --------->AHL20(2)  <-------TEIL  --------->GLK1(2)   <---------ANAC46              <   aagttactttctcaccaaaaaaataaaatattttaagctacataatagaaataatctattgaataaattgttgtgttttgcaccctgataattcgatttt  20267000                                    <---------ZAT2                                    --------->At4g35610                                 <-------TEIL                 --------->At4g35610                               <---------GLK1(2)              <---------ZAT2                               --------->ARR14(2)             <---------At4g35610                      <---------AHL20(2)                 --------->ANAC58                     <---------AHL20(2)                  --------->ANAC58              ----------->GT1  <---------ARR14(2)    ----------->GT1            --------->ANAC55(2) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------At4g35610<--------P     --------->YAB1 -----------GT1      --------->AHL20(2)              --------->YAB1--------->GLK1(1)        <--------   tgtaacgaggcaaattttgttaattaaatatcagattcagctcataacatgtgaatggtaagtaagctgaaatcaaaatgttcagtaatgtagtctgatt  20267100           ------->MYC3           <-------MYC3           ------->MYC2           ------->PIF5           <-------PIF5           <-------MYC2          --------->ANAC58          --------->ANAC46          ==================================================bZIP_DOF          --------->bZIP60(2)          --------->TGA1a          <---------TGA1a          --------->ANAC55(2)          <---------ANAC55(2)                                             ---------->DOF2          --------->O2                                      --------->TOE1(3)          --------->ANAC58                        --------->DAG2       --------->TOE2(3)          <---------O2                           ---------->DOF2--------->GLK1(1)        <------------OsbHLH66             --------->ATHB12  --------->TOE2(3)                    <---     ------>ZmHOX2a(1)                   <---------YAB1    ----------->RAV1(2)                 <xxxxx  ------>NtERF2<---------YAB1          --------->YAB1      <---------ANAC55(2)       <---------ICU4 -YAB1  <---------ALFIN1              --------->ICU4  <---------ICU4 -------->P   --------->YAB1 <---   gtgcctcctcccacgtgattatagactactatcacttggaattatcattggaaaagtcattacctgaaatctaccatagagctatcaacatcacatcttc  20267200                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             --------->ZAT18                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                  <---------LBD16                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                 <---------ANAC46                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                 --------->ALFIN1                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                xxxxxxxxxxxxxxxx>smallRNA(i)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                <---------SPL7                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                               <---------ANAC58                                               <---------ANAC58                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                             <---------LBD16--------->ALFIN1                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                       <---------ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       <---------ANAC58    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                       <---------ANAC46xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(i)                                xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                             <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                            <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------MYB46(3)                           xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(s)                           xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ABI4(2)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ALFIN1                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------SPL7                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------ANAC46                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC58                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) <---------ANAC58                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)                         xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ZAT18                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(s)                         xxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(i)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxsmallRNA(s)                         <------NtERF2xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ZAT14                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->ZAT14                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                        xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------DEAR3(1)  --------->ANAC58                       --------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    --------->ANAC58                       <---------ARR14(2)xxxxxxxxxxxxxxxx>smallRNA(s)             ----------->GT1                       xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     <---------ATERF1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <------ZmHOX2a(1)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <-----------GT1xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------DEAR3(1)xxxxxxxxxxxxxxxx>smallRNA(i)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<----------DOF2 <xxxxxxxxxxxxxxxxsmallRNA(i) ------ANAC58     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <--- xxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----------->GT1             ----- ------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->LBD16<---------DEAR3(1)    <-------TEIL   cttgccatgttttatacattctgaggctccgaatggtgactgcgttttgcggtgcggaagaagtgcggtgcggttcaaataggaacgaaaatacatagat  20267300  Previous    Next  AGI:  At5g49820.1    Description:  EMB1879 (EMBRYO DEFECTIVE 1879). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46920.1); contains InterPro domain Protein of unknown function DUF647 (InterPro:IPR006968) Range:  from: 20263726    to: 20266771    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version