Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->ICU4                                                                <---------ATHB51                                                                <---------AHL20(2)                                                             <---------AHL20(2)                                                            <---------AHL20(2)                              --------->AHL20(2)         <--------HAHB4                              <---------AHL20(2)        --------->ICU4                          <---------AHL20(2)      ------>MYB83  --------->AHL20(2)                   <---------ZAT18                ------>MYB46(1)                 <---------At4g35610             <---------ALFIN1<---------ICU4                 --------->At4g35610       <---------ANAC58 --------->AHL20(2)            <---------YAB1--------->AHL20(2)    --------->MYB46(3)                >>>>>>>ZML2 ---------GT1  <---------CCA1(2)           <---------ANAC58<---------YAB1      --------->ARR11(3)   ttacacatcttcttctcatagctcacatttatttatatatgttttgcatacccactcgattattaaataattagttttgaagttctagtcaatatttcat  20233200              <---------ICU4              --------->YAB1             <---------YAB1           --------->YAB1           <---------ICU4          <---------YAB1        <---------ICU4        --------->YAB1       <---------YAB1     --------->YAB1       <---------MYB46(3)                                  <-----------------AGL1     XXXXXXXXXXXXXXXXXXXX>MIR414      <---------ZAT6                         <-----------GT1     <---------ICU4    <-----------RAV1(1)                             ------>ZmHOX2a(1)    <---------YAB1 <---------YAB1    <---------YAB1                 ---------->ID1          ------->GAMYB  --------->YAB1 --------->YAB1    <---------ICU4               <---------ANAC58           --------->DEAR3(1)  <---------ICU4<---------YAB1    --------->ICU4                <---------ANAC58           <---------MYB52(2) <---------ATHB12<---------ICU4<---------YAB1                   <---------ANAC46           --------->MYB46(3)   caaatcatcatcatcatcatcatcactgttgttgtaattagtattagtatatcaagttggaaaatggcttgtcctcatttttccaacgaggcaacgacca  20233300                                                                                          <---------TOE2(3)                                                                                          <----------                  <-------GAMYB                                                          --------->MYB52(1)                  ----------->GT1                                                      ------>ZmHOX2a(2)                 ----------->GT1                                                      --------->CCA1(2)               <-------GAMYB                                                          <------ZmHOX2a(2)               <---------ANAC58                                                      --------->ARR11(3)              <---------MYB46(3)                                                     --------->AGP1           --------->YAB1             <---------ZAT14                                <---------ARR11(3) <---------DAG2<---------ANAC58   <-----------GT1   --------->AtMYB61               --------->GLK1(1) <----------DOF2 <---------MYB46(3)   --------->ZAT14                        <----------DOF2---------   tgactttattcaatcttggttgttaaaaaaaacatatcactgcatagttgatgaccacaactatattccacaagtctctctttctgagatctaacgattt  20233400                                                                 <---------YAB1                                                               --------->YAB1                <---------AHL20(2)                        <---------ATHB12 <---------AHL20(2)          --------->YAB1                                  --------->ICU4  --------->AHL20(2)    --------->YAB1                             <---------AHL20(2)--------->ICU4  --------->ANAC58                         <---------CCA1(1)   <---------ICU4  --------->ANAC58    <----------DOF2      <---------RVE1(1)  <---------ATHB51 -------AGL1    --------->AHL20(2)        --------->ARR11(3)  <---------ATHB12                      - >ATHB12<---------ARR11(3)                <---------ARR11(3)  --------->ICU4                ---------   gggcaaacaaaatcatattttattctttgtttttgaagtttatagatatttttttttgtaatcaataatgagtgtatttaatacagtagataaataaggg  20233500                                                         <------------CBF                                                       <---------AHL20(2)   --------->TOE2(3)                         <------------CBF   <---------ANAC58   <----------DOF2--------->ANAC58       <---------TOE2(3)      <---------ANAC58 <-----------GT1  *TSS ----->ZmHOX2a(1) --------->ANAC58   <----------DOF2--------->YAB1            <------------CBF  ----- >MYB52(1)        --------->ANAC46   --------->TOE2(3) --------->AHL20(2)  ------------>CBF   <------   tcctactttagtttcgcatcacgacaactcatatgtatactttaatgtattgtttcataaattgttccttcccattactcaattgacatttccatttaac  20233600                                                 <---------WRKY18(1)                                                 >>>>>>>>>>WRKY11                                                 >>>>>>>>>>WRKY38                                                 >>>>>>>>>>WRKY43                       <---------CCA1(2)         >>>>>>>>>>WRKY6                   <----------DOF2               >>>>>>>>>>WRKY26     ----------------->AGL1                     --------->WRKY38(1)    ----------------->AGL1                      --------->WRKY45                        <----------DOF2    <-----------------AGL1                      --------->WRKY12                  <-----------GT1  <- ---->MYB46(3)    --------->TOE2(3) <---------At4g35610                       ------>ZmHOX2a(1)    <- -----GT1 ----------->GT1           --------->At4g35610                 ------>ZmHOX2a(1)       <----   aactcttcccaattgtgaaacctttatatcccattatcagctgttttaagttgaccaagttttttcttatggtcctcttcctattttcttcttttgatat  20233700                                                   --------->ATHB51                     <---------YAB1                                                  --------->ICU4                        <---------AHL20(2)                                                  <---------YAB1                      <---------ICU4         <-----------GT1                         --------->TOE2(3)                <---------YAB1 ---------DOF2                                 <---------YAB1                    <---------AHL20(2) --------DAG2                         <----------DOF2                           --------->YAB1    <-- -------GT1--------->ZAT6        ---------->ID1<---------TOE2(3)      ---------->DOF2--------->ICU4 <   acttttttttttaactctatttgttcaaagtcttcgtcttctttttgttaacattattgtttacatgtttttgaaagagagattataatttttattaaga  20233800                        ------->PIF4                        <-------MYC3                        <-------PIF4                        ------->MYC3                        <-------MYC2                        <-------MYC4                        ------->MYC2                        ------->PIF5                        <-------PIF5               --------->REM1(2)                                                    <-------TEIL               --------->ZAT14                                                     <---------ARR14(2)          <----------DOF2                               <------ZmHOX2a(2)          --------->GLK1(2)         --------->TOE2(3)  <----------DOF2           <------ZmHOX2a(1)  <---------ZAT6  <-----------HVH21 <---------ZAT18                --------->CCA1(2)   ----------->GT1 -------GLK1(2)<---------ZAT14                  <---------TOE2(3)    <------ZmHOX2a(1)<----------DOF2 -------TEIL  <---------ANAC46         <---------GLK1(2)====================HOX2a_HOX2a   gattcgtcaaacctttgtgtagagcacatgcttttttcttagattattttgagataggatcagaaaacagaggaagtgataagaggttctttttgggttt  20233900                                                                                                  ---                                                                                                <----                                                                                                <----                                    ------>ZmHOX2a(2)                     --------->ANAC58      -----                                  --------->ARR11(3)                      --------->ANAC58  <--------                                  <---------ARR11(3)                  --------->ANAC58      <--------                        <----------DOF2                               --------->ANAC58      <--------            <---------ARR14(2)  ------>ZmHOX2a(1)                  <---------ZAT18       --------->At5g28300            --------->ARR14(2)----------->RAV1(2)         <-----------------AGL1       <---------DEAR3(1)   gaagatgagttcaagaactggagcctctttgctcctgatcttgtttttcttccaaatttgttctgtttcggcactcacgaatggtttagacggtgagtgt  20234000 ----------->GT1 ------>ALFIN1                                                               --------->AHL20(2) -----ANAC58                                                               <----------DOF2 -----ANAC58                                   ------>ZmHOX2a(1)    <---------GLK1(2) ---->ALFIN1                                  <---------MYB59      <---------At4g35610 -ANAC46                                     ----------------->AG  <---------ZAT2 -ANAC58                                    ---------->ID1         --------->At4g35610 -ANAC58 <-------TEIL                      <-----------GT1  <-----------RAV1(1)       ----------->HVH21   gtgtggatatatacatatacaaccatatagatgatgaacagagtttttcctaatcttgaatattggtgcagcttctgctttaaatgctctgaagagtgaa  20234100  Previous    Next  AGI:  At5g49760.1    Description:  leucine-rich repeat family protein / protein kinase family protein. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G79620.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G49770.1); similar to ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G49780.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95747.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46943.1); similar to unnamed protein product [Vitis vinifera] (GB:CA Range:  from: 20233598    to: 20238525    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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