Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ------->GAMYB                          --------->YAB1                         --------->MYB46(3)                         <---------ATHB12                         <---------MYB55(2)                          <---------ANAC58                        -------->P                                   <---------ANAC58                        ------>MYB83                                 <---------ANAC46              --------->DAG2                             <-----------GT1             ---------->DOF2                          <---------AHL20(2)    <---------ZAT14     ------>MYB46(1)             <---------YAB1---------->ID1 <---------ANAC58    --------->ZAT14   ------->GAMYB      <----------DOF2<-----------GT1    <---------AHL20(1)       < --------->ANAC58    --------->MYB46(3) <---------------AGL15   <-----------RAV1(1)                 < --------->ANAC58  <-----------GT1      --------------->AGL15 <----------DOF2    <---------ANAC58 <--   cacaagtactctgcaaaaagttaaccaaccatcaaaaacatgcctttataagttatttttatctctttgttgcttaatatgtttcttactctgaatttga  20186300                                                                                                   <-                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                            ------>ZmHOX2a(2)                                                                                           <------ZmHOX2a(2)                            --------->WRKY12                  ---------->DOF2             --------->ARR14(2)                            ----------->HVH21              ------>NtERF2                  <----------                            --------->WRKY38(1)           --------->RAP2.6(2)             <---------ARR14(2)     <---------ANAC58      --------->At5g28300           <---------RAP2.6(2)              --------->ARR11(3)     <---------ANAC58      <-----------HVH21            <---------At4g35610               <---------ARR11(3) ---------MYB46(3)      <---------At5g28300             --------->At4g35610             --------->DEAR3(1) -----------RAV1(1)    <-----------GT1                 --------->MYB52(1)              <------NtERF2 -------At4g35610      --------->MYB52(1)          <---------ZAT6                    <---------DEAR3(1)   agctgttgcgaaacagagagagttttaacggtgaccgaggcgaagaagggttagagatagcggccaaagacagtcttggactcttagtcgccgatcttgg  20186400                 --------->ALFIN1                --------->LBD16               <---------TGA1a          <---------ETT(1)                    --------->At4g35610               <---------O2            --------->SPL7                       <---------At4g35610               <---------ANAC46   --------->ZAT14                      <---------LBD16               --------->TGA1a    <---------ZAT14                     ------>ZmHOX2a(2)           <---------LBD16     --------->At4g35610                    ====================HOX2a_HOX2a -----NtERF2   --------->DEAR3(1) --------->At4g35610                 <---------LBD16           ----- ------ANAC58  --------->O2    <---------At4g35610         <---------HSFB2a(2)     <------ZmHOX2a(1) ------ANAC46--------->LBD16  <---------ARR14(2)        <------ZmHOX2a(1)   <-------GAMYB     <------ ------ANAC58------>NtERF2    --------->GLK1(2)         =====================HOX2a_HOX2a     ------>ZmHOX2a(1) -ARR10<---------MYB46(3)     --------->ARR14(2) <---------TOE2(2)    ==============================HOX2a_HOX2a   cgtcgaagtttgttccgccgtgggagtttgagcatctgcagtccgacaacgtaggctaggactagaagttgatcggggagttgaaggattacttcctccg  20186500                                                                                       <------NtERF2                                                                                     <------NtERF2                                                                                    ------>NtERF2                                                                                    <---------LBD16                                                                                    <---------At4g35610                                                                                    <------NtERF2                                                                                    --------->LBD16                                                                                    --------->At4g35610                                                                                   --------->DEAR3(1)                                                                                   <---------ATERF1(1)                                                                                  --------->ATERF1(1)                                                                                  --------->ORA47(2)                                                                                  --------->RAP2.3(1)                                                                                  --------->DEAR4(2)                                                                                  <---------DEAR3(1)                                                                                  <------NtERF2                                                                                 <---------RAP2.3(1)                                                                                 ------>NtERF2                                                                                 <---------RAP2.6(1)                                                                                 <---------ERF1                                                                                 <---------ATERF1(1)                                                                                <---------DEAR3(1)                                                                                <---------RAP2.3(2)                                                                                --------->DEAR3(1)                                                                               --------->RAP2.3(1)                                                                               --------->ERF1                                                                               --------->ATERF1(1)                                                                               --------->RRTF1(1)                                                                               --------->RAP2.6(1)                                                                              --------->LBD16                                                                              <---------RAP2.3(1)                                                                           --------->CCA1(2)                                                                           <------ZmHOX2a(2)                                                                          --------->ARR11(3)                                                                          --------->ARR14(2)                                                                 <---------ANAC46--------->ABI4(2)                                                                 <---------ANAC58<---------RRTF1(1)                                                             <-------GAMYB<---------ARR14(2)                                                            <---------ANAC58 <---------DEAR3(1)                      <----------DOF2                       <---------ANAC58------>ZmHOX2a(2)                     <---------GLK1(2)                      --------->MYB52(2)<---------ATERF1(1)                    --------->HSFB2a(1)                    --------->ABI4(2)<---------LBD16                    --------->At4g35610                    <-------TEIL   --------->AGP1                    --------->HSFC1(2)                   <---------MYB52(1)--------->ARR14(1)                    --------->ZAT2                       ------->PIF5     <---------ARR11(3)                    <---------ZAT2                       <-------PIF5   ----------->ARR10                    <---------HSFC1(2)                  <---------DEAR4(2)--------->ARR14(3)                    <---------At4g35610                 <---------DEAR3(2)<---------ARR14(3)   ---------->DOF2 ------->TEIL                 <---------YAB1   <---------ANAC58<---------DEAR4(2) - ---->LBD16     --------->ANAC46           <--------P  <---------DEAR3(1)<---------GLK1(1)<------NtERF2 ---LBD16     --------->MYB52(1)  <------ZmHOX2a(1)   <---------LBD16 --------->ETT(2)------>NtERF2 <   gatagaaaagctagcttaacgcagcttcttgggctaggacttggggtaagattatagccggtgcgttgcttgtcgagatccggcgccgcggcatcgctgt  20186600                  --------->DAG2                ---------->DOF2          <---------MYB46(3)         --------->ALFIN1         <---------DEAR3(1)         <---------AtMYB61        <-------GAMYB        <---------ABI4(1)             <<<<<<<<<<<<<<<<<LFY        <------NtERF2           <---------ATHB12       <---------DEAR4(2)       --------->MYB46(3)       <---------MYB46(3)      -------->P      <---------DEAR3(1)       ------>MYB46(1)      <---------DREB2C(2)      ------>MYB83            <---------YAB1      <---------AtMYB61       ------>NtERF2         --------->AHL20(2)     <<<<<<<<<MYB2      --------->ALFIN1       --------->DEAR3(1)     <---------YAB1 <---------MYB46(3)     <---------ABI4(1)      <------NtERF2           <---------AHL20(2)  <---------AtMYB61           *TSS -------->HSFB2a(2)        ------>NtERF2      <---------ANAC46    <--------P                    <---- ---------HSFB2a(2)   <-------TEIL    >>>>>>>>>>>>>>>>>LFY       <-------GAMYB                  -----   ttctaggggcggtggtgcaaaaggctcgtcgccaaccagtacccattggtgtatattattaatcttgggttgttttggttttcaagatggagaaagtttt  20186700                                   <---------ARR11(3)                          <---------ARR14(2)                                   --------->ARR11(3)                          --------->ARR14(2)           --------->DAG2  <------------CBF                                 <---------ANAC46          ---------->DOF2 --------->ATHB12                          ------------>AtMYB77<---------AtMYB61      --------->ANAC58   <---------YAB1                            ----------->HVH21  <----------DOF2      --------->ANAC58   --------->ICU4            <----------ID1 --------->At5g28300<---------ANAC58  ------------------------>ANAC81  <---------GLK1(2)   ---------->DOF2     <---------LBD16   -------- -----HSFB2a(2)        ---------->DOF2          ------------------------>ANAC81<---------GLK1(2)<---- ---->HSFB2a(2)      --------->ARR11(3)     <------NtERF2     --------->MYB52(1)     <---------ANAC58   agaaaaacaagaaaaaggaagaagataaagattgaaagattttggcagagaagaagacaaaggaaaacggtgacagtttcggattttgctttggtctcaa  20186800                                   ------>ZmHOX2a(2)                                  <------ZmHOX2a(2)                                  --------->CCA1(2)                                 <---------ARR14(3)          <-----------GT1        --------->ARR14(2)          --------->ZAT6         <---------ARR11(3)        <-----------GT1          --------->ARR11(3)       --------->YAB1            --------->AGP1                           <-----------GT1      <---------YAB1             <---------ARR14(2)             <---------AHL20(2)            -------      --------->ICU4             <---------AGP1            <---------RVE1(1)                 <-------   <---------YAB1  <---------At4g35610                    <---------GLK1(2)                  <------- ---->CBF<---------YAB1         <---------GLK1(1)         <---------ARR11(3)     <----------DOF2<---- --------CBF      ------->TEIL  --------->GLK1(1)         --------->ARR11(3) <----------DOF2 --------   ttgttgttattatcactctgcatctcagaatgggagatctgtggagttttagtataaaaagatttttaaaatggtttttctttctttattgtccagattc  20186900                                                                                 <---------At4g35610                                                                                 --------->At4g35610                                                                                 --------->ZAT2                                                                                 <---------ZAT2 -->GLK1(2)                     <---------YAB1                            <-----------GT1 --ARR14(2)                     <---------ATHB12                    --------->AHL20(2) --GLK1(2)                     <---------TOE1(2)                   <---------AHL20(2)           <---- -------------AGL1            ------>ZmHOX2a(1)<-----------HVH21   <---------AHL20(1)           ----- ->ARR14(2)        <---------At4g35610 ------>ZmHOX2a(1)           --------->AHL20(1)          ------   caagtttggactctctctctctgcttcttctcctatgattcctctcaagggtccgatatataagcctaaaatatttatactgtagctggattttgcattt  20187000            <----------DOF2        <---------GLK1(1)                             <---------YAB1        --------->GLK1(1)                             <---------AHL20(2) -----AHL20(2)        <---------ANAC46          <---------AHL20(2)                     <----------DOF2 ---->AHL20(2)     ----------->HVH21     --------->DAG2                  <---------ANAC46 --->AHL20(2)      ----------->TGA1     ---------->DOF2  <---------WOX13(1)         <-----------GT1   aattcttgggatttctttttgatgacgcgaatgtcgaaaacaaaaagtatttttttttaattgaagaagtctattatgtggacgattttcttttttggac  20187100                                               <---------CCA1(1)                    ----------->GT1           <---------ARR14(2)                   --------->DAG2             --------->ARR11(3)                   <---------------AtSPL8    <------ZmHOX2a(1)          <---------YAB1     <---------AHL20(2)<---------RVE1(1)       <---------AHL20(2)   <---------AHL20(2)<---------ARR11(3)      --------->AHL20(2)    --------->AHL20(2)--------->ARR14(2)   --------->ARR11(3)           <----  <---------YAB1   --------------->AtSPL8    ==================HOX2a_HOX2a                    <------ <-----------GT1  ---------->DOF2  <---------WOX13(1)   ------>ZmHOX2a(2)               <-----------GT1   gattttcattttatatttgaaaaagtacaattaaatgaatgacaagaggatattttgatctatgtgatatatcatgtttttgaagacgattttcttcttt  20187200  Previous    Next  AGI:  At5g49665.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to EDA40 (embryo sac development arrest 40), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37890.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN77438.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain von Willebrand factor, type A (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 20184228    to: 20186700    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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