Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       ----------------->AG                                     ----------------->AGL1                                     ----------------->AGL2                                    >>>>>>>>>>>>>>>>>LFY                                  <----------DOF2                            --------->ALFIN1                           ------->MYC3                           <-------MYC2                           ------->MYC2                           <-------PIF5                           ------->MYC4                           <-------MYC4                           ------->PIF5                           <-------MYC3                           <-------PIF4                           ------->PIF4             --------->GLK1(1)                          <---------O2              <------ZmHOX2a(2)                          --------->O2             <---------ARR14(2)                          ===================bZIP_DOF------>ZmHOX2a(2)                          --------->TGA1a          --------->ARR11(3)                         ------->TEIL<-----------------AGL1                        <------------OsbHLH66      --------->ARR14(3)                       --------->ZAT14             <---------ARR11(3)                       <---------ZAT14             <---------AGP1                       <---------ZAT18        <------NtERF2                       --------->ZAT18      --------->ETT(1)                                      <--           <---------AHL20(2)    <---------ANAC58  <---------ARR14(3)                       --------- ---------GT1     <---------YAB1 <---------ANAC58  --------->ARR14(2)   <---------YAB1    <---------YAB1 >GT1      <-----------GT1<---------TGA1a  --------->RAP2.6(3)       <-------TEIL         --------->ICU4   taactcgatctatttacattactagtgcacgtgtgactttccattgtcggcaagatctctatacaagaagattcatgctagagggcaagatgatgatttt  20151000                                                                  ----------->RAV1(1)                                                                  --------------->AGL15                                                            --------->ATHB12                                                           <---------YAB1                                                        ----------->HVH21                 --------->HSFB2a(2)                                                      ----------->RAV1(2)                 <---------HSFB2a(2)      <-----------GT1                                 ========================RAV      <-----------GT1 -------AtLEC2                        <---------MYB46(3)----------->TGA1          <---------MYB52(1) >ARR11(3)                          <---------MYB52(1)--------->At4g35610       ----------->GT1    --   gcatagatttactatattttcagaggcattttctatccgatggtttctctcttatcgtctgacgattgccacatatatcatttcgttattttccataact  20151100                                                                       --------->ICU4                                                                     --------------->AGL15               <---------AHL20(2)                                    <---------------AGL15              <---------AHL20(2)                                    ----------------->AGL3              --------->AHL20(2)                                    <-----------------AGL3   --------->ZAT14                                                --------->ANAC58   <---------ZAT14                                ------->TEIL    --------->ANAC58 --------->ZAT14   --------->YAB1               <-------TEIL  --------->TOE1(3)                   <-- ------->LBD16--------->AHL20(1)    <---------AHL20(2)       ----------->RAV1(2)     --------->MYB52(1)   ccgagtactctcaaaatttaatgagcatgttgacatattttttttgcaaatgcatttcaaataacctgaagccataaatagtgaccataacgtccaactc  20151200                                                                                         <-----------GT1                                                                                   <---------AHL20(2)                                                            --------->AHL20(2)    <---------AHL20(2)                                                     ----------->GT1              --------->AHL20(1)  --------->AHL20(2)                         <-----------HVH21             ----------->GT1 -------YAB1    <---------REM1(1)      --------->GLK1(2)    <---------AHL20(2)    --------->AHL20(2)   ttgattatatgagtataggtgtaagttttgtcaacatagagattccatgtcaaatgtgtgaataaaatatagaaaacttgaaaatttaatataaccttct  20151300                                                                                                    <                                                                                                    -                                                                                --------->ALFIN1 <---                                                      ------->TEIL          <---------ANAC58     ----                     --------->MYB52(1) <---------------AtSPL8              <---------ANAC58    -----          <---------DAG2                --------------->AtSPL8              <---------ANAC46<--------          <----------DOF2             <-----------RAV1(1)                  <-------TEIL     ---------       <-----------GT1        ----------->GT1        <---------CCA1(2) <-------TEIL     <----------DOF2   tgtttttgtttactttatagacaaaacagaagttgtatatatgttgtacatatatgtatctatagactatagctacgtccgtgtgtgtgtctttataaat  20151400             <---------ZAT18           --------->ANAC46           --------->ANAC58           --------->ANAC58       --------->ANAC58       --------->ANAC58       --------->ANAC46       --------->ANAC55(2)                                                     ---------->DOF2      < ---------AHL20(2)                                                         ========================== -------->AHL20(2)                                                         ----------->RAV1(1)------- ------AHL20(1)                                                           --------->MYB46(3) <------- ----->AHL20(1)                   --------->ANAC58                      <---------ARR14(2)   ======== ---->AHL20(2)           <----------DOF2                                --------->ARR14(2)  ------>ZmHOX2a(2) -YAB1<---------LBD16<---------CCA1(2)      --------->ATHB12     <---------ANAC58       --------->ICU4 -->TBP--------->ANAC55(1)*TSS    --------->ANAC58               <---------ANAC58       <---------YAB1   atataattcacgcaaggcactctctatctttctctcaagctatggatgaatggggaagtgattcaaggcttgaagaaccacaaaagtgtcatgatccagg  20151500       --------->ANAC58       --------->ANAC58   --------->ANAC58   --------->ANAC46                                                                           <------   --------->ANAC58  --------->YAB1                                                           <------ ---------REM1(2)    <---------ICU4                                                           <------ ====RAV          --------->YAB1                                                          <---------WOX13(1) -->LBD16  ----------->RAV1(1)                       ----------->GT1                    --------->ATHB12 ----RAV1(2) --------->MYB46(3)                     --------->DAG2                     <---------YAB1 ======================RAV --------->WOX13(1)      ---------->DOF2                  <----------DOF2<-   tatacacgcaggccaacaaataatcatgtccatcacttatgtagtttgtttgataaagtataacttatgttatgtagttgcattaacttttgattggctt  20151600      --------->DAG2      <---------TOE2(3)                                                                     ---------    ---------->DOF2                                                                        -------->P ---ANAC58                                                                          <XXXXXXXXXXXXXXXX ---ANAC46                     <------ZmHOX2a(1)                                  --------->ANAC58 ---ANAC58               >>>>>>>>>TBF1<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ----------->TGA1 <xxxx -----ZmHOX2a(1)      >>>>>>>>>TBF1  >>>>>>>>>TBF1                 <---------YAB1 --------->ANAC58 <-   aggacaaaaaggttgtttcaagaagaagaagaaggagaagaagaagatgatcaagacttgttctacttcgtgatagaaacaatgacgctatcttacctga  20151700                                                                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                           <-----------GT1                          -                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <-                                                    --------->ARR11(3)                           xxxx                                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <----                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxx                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             <xxxxxxxx                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <xxxxxxxxx                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           <xxxxxxxxx                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                  <xxxxxxxxxx                    <----------DOF2      <---------WRKY18(1)      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<                    <---------DAG2      xxxxxxxxxxxxxxxx>smallRNA(s)                      <xxxxxxxxxx             --------->KAN4(1)          xxxxxxxxxxxxxxxx>smallRNA(i)                      <xxxxxxxxxx             <----------TaMYB80         <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 <xxxxxxxxxx             <---------KAN4(1)         xxxxxxxxxxxxxxxx>smallRNA(s)<----------DOF2       <xxxxxxxxxxx            ---------->TaMYB80        xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             xxxxxxxxxxxxxxxxx         ----------->GT1              <---------ANAC58 <----------DOF2             <xxxxxxxxxxxxxxxxx       <---------WOX13(1)             <---------ANAC58<---------DAG2<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <xxxxxxxxxxxxxxxxxx     --------->ATHB12    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxx    <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <xxxxxxxxxxxxxxxxxxx -->RAV1(2) <---------KAN4(2)         xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         <xxxxxxxxxxxxxxxxxxx XXXXMIR390A/B <-----------GT1        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxsmallRNA(i2)      <-----------GT1 <---------ARR11(3)           xxxxxxxxxxxxxxxxxxxx ---------DOF2--------->KAN4(2)<----------DOF2<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------GT1 -----   gctttactaattggtatattccctttttctggtctttttttcttgaccttgtaagaccttttctctactcttttctgtcttcttactatttccatcttcg  20151800             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <xxxxxxxxxxxxxxxxsmallRNA(i)    xxxxxxxxxxxxxxxx>smallRNA(i)   <-----------GT1 -------->GLK1(1) --------ARR11(3) xxxxxxxxxxxxxxxx>smallRNA(i2) -----HSFB2a(2) xxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxsmallRNA(i2) ---------GLK1(1) xxxxxxxxxxsmallRNA(se3) xxxxxxxxxxsmallRNA(fl3)                                           --------->ZAT14 xxxxxxxxxxsmallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxsmallRNA(s2)                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxx>smallRNA(i2)                                       <---------ARR14(3) xxxsmallRNA(si3)                                        --------->ARR14(3)                xxxxxxxxxx xsmallRNA(fl3)                                          <---------ARR11(3)              <---------ALFIN1 xxxxxxxxxxxxx>smallRNA(i)                               <---------GLK1(2)               xxxxxxxxxxxx xsmallRNA(i2)                     --------->AHL20(2)    --------->ARR11(3)           <-----------GT1 xsmallRNA(si3)                    <---------AHL20(2)--------->YAB1xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xsmallRNA(fl3)             --------->MYB52(2)      <------ZmHOX2a(2)       <---------YAB1xxxxxxxxxxx >smallRNA(i2)           --------->TOE2(3)       <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->YAB1    -- ---->HSFB2a(2)          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    ---------->ID1   <-------TEIL  <------   agatttctcaattctgtcgagtttctacattagttgtttaatttgactaaatcgatcaagattttgttgtatactcttatgattcatattcccactcttt  20151900  Previous    Next  AGI:  At5g49615.1    Description:  TAS3b (trans-acting siRNA 3b); other RNA Range:  from: 20151426    to: 20152012    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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