Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         --------->ARR14(2)                  <---------ALFIN1                     <---------ARR14(2)            <----------DOF2     --------->YAB1                                    --------->GLK1(2)  --------->ANAC58     <---------ICU4                       <------ZmHOX2a(2)               --------->ANAC58    <---------ATHB12        <---------GLK1(2)         <---------GLK1(2)   --------->ANAC46         --   aatccaatgataactcagaaacacctctcagattatcaacacagatcaaactagaagaatctgatacttcagccacaagcaattgctcttttacagagag  20149600                                                                                                    <              ----------->GT1                                                                       -            ----------->GT1                                                                         -        --------->ANAC58                     --------->ICU4       ----------->RAV1(2)              <-        --------->ANAC46             --------------->AtSPL8--------->ARR14(2)                    ----        --------->ANAC58           --------->GLK1(2)  --------->MYB52(1)             --------->ANAC55(2) <---------WOX13(1)            ----------->GT1--------->ATHB12   ------->TEIL        <---------ANAC55(2) ------->ATHB12         <-----------HVH21    <---------YAB1<---------ARR14(2)    <-----------GT1 ----   ttgattgaacaaggaagtgaaatatttgtcagaaggtaatctgtaccatgatttgcaaacggatttgaacctgaagagagatttaacaggtaatctagca  20149700              <---------------AGL15              --------------->AGL15              --------->TOE2(3)             <-----------------AGL1             ----------------->AGL1           <-----------GT1    --------->ZAT18         <---------KAN4(2)    <---------ZAT18                 --------->AHL20(2)    ----------->GT1    ---------->DOF2                       <---------ATHB12                    ---- ---------ARR14(2)  <---------HSFB2a(2)                    --------->WOX13(1)                <------- -------->GLK1(2)   --------->HSFB2a(2)       ----------------->AGL3--------->ANAC46         -------- -------->ARR14(2) <---------LBD16 <----------DOF2       <------ZmHOX2a(2)             <<<<<<<<<<<<<< --------GLK1(2)---------->CDC5    <---------DAG2        ================================HOX2a_HOX2a ----->ANAC58===================================================MADS_MADS           --------->GLK1(2) ----->ANAC58----------------->AG <---------DAG2   --------->MYB52(1)             <------ZmHOX2a(1)   agaatctggagaataacctcatcgggaaagagagcacctttttggttatccattaacagatcaatcaaatacacaagagacagaggaatctacaatggtt  20149800                                                                                      --------->ARR14(2)                                                                                      <---------ARR14(2)                                                                               <---------YAB1                    <---------At5g28300                                   --------->ATHB51 ------>DOF2       <-----------GT1                                        --------->ATHB12 --MYB46(3)     <---------ZAT6                                           <---------YAB1 --->GT1 <----------DOF2                       --------------->AGL15 ----------->RAV1(1)     -------- <<<LFY --------->TOE2(3)               <---------YAB1         --------->YAB1  <---------TOE2(3)  ---   aaagactaaacctttatagtcttaccgcatcaattctatgttttgattacccattgatggaagaaagataacaacataattgagattggattcgaccaaa  20149900                                                                         --------->WRKY12                                                                         --------->WRKY38(1)                                                                       <-------GAMYB                                                                   <---------WRKY18(1)                                                                 <----------DOF2                                                                <---------ANAC58                      <------ZmHOX2a(2)                     --------->GLK1(2)                      <---------ZAT14                      <---------GLK1(2)             <---------ANAC46                     --------->ARR11(3)                    <---------ARR14(2)          --------->ATHB12 ->AtMYB61           <---------ARR11(3)      --------->MYB52(1) <---------ANAC58      <---------ZAT6 ------->DOF2       --------->GLK1(1)<---------ICU4    *TSS--------->ARR14(2)     <---------ZAT14   aaaagagaagagaccatttcagagatcactgagaaacaaaaatggcgaaacggatgatgaagaatcgcttgagcgttgaacaagtttagtgatggggaag  20150000                                                                         --------->KAN4(2)                                                        ----------->GT1 <---------KAN4(1)                                                  <---------AHL20(2)    --------->KAN4(1)        ----                                                  <---------AHL20(1)   <---------YAB1          <-----                  ------------>CBF                --------->AHL20(2)   <------ZmHOX2a(2)       <-----          <---------YAB1                          --------->AHL20(1)  --------->ARR11(3)   <---------AtLEC2   <---------TOE1(2)                             --------->AHL20(2)   <---------ARR11(3)  <-------TEIL   <---------TOE2(2)  <---------ATHB12           --------->YAB1---------->DOF2        ------->TEIL <-   aagcgcatgtttctgaatgggccaataaacaaatactaggcccaaggcccattatattttgttaataaagaagatcattccatatgtgtatgtgcatggg  20150100     --------->MYB52(2)                                                         --------->YAB1   <---------MYB52(1)                     ----------->GT1           --------->GLK1(2)               < ----->ALFIN1             --------->AHL20(2)                       <---------GLK1(2)              <-- ----ANAC58               --------->AHL20(1)              ---------->DOF2       <---------ICU4    <-- ----ANAC58               <---------AHL20(2)    <---------ARR11(3) --------->ARR11(3)           ----- --------ANAC46          --------->AHL20(2)     --------->ARR11(3) <---------ARR11(3)           -----   tgtgtgttagttatatagtagttccaaattaattgttgatgaattagtaaaatcttatatcaaagtagagattttgagttaataataagttagtataacc  20150200                                            ------>ZmHOX2a(2)                                           <------ZmHOX2a(2)                                          <---------ARR14(3)                                          --------->ARR11(3)                                          --------->ARR14(2)                                          --------->ARR14(3)                                          <---------ARR14(2)                                          <---------ARR11(3)                                 <---------CCA1(1)     <----------DOF2             <---------RVE1(1) --------->ARR14(2)             <---------ARR11(3)                             <----------DOF2 <---------GLK1(2)              --------->ARR11(3)                        <-----------GT1------->TEIL ------ZmHOX2a(1)              ====================HOX2a_HOX2a          <---------AHL20(2) -------TOE2(2)                <------ZmHOX2a(1)                        --------->AHL20(2)       ---- -------TOE1(2)                ===================HOX2a_HOX2a       --------->AHL20(2)   <-------TEIL ---->TOE1(2)                <---------TOE2(3)                   --------->TOE1(3)   --------------->AtSPL8 ---->TOE2(2)       <---------ALFIN1      --------->AGP1         --------->TOE2(3)   <---------------AtSPL8   taggattctttcatttagtcttccacccatgaaggatattttgagatcttggttcttcttgggcaaaccttaaattaaacacttttatatgtacatctta  20150300                                                                              ----------->GT1                                                                              <----------ID1                                                                        <---------YAB1                                                                      <--------HAHB4                                                                      <---------ICU4                                                        <---------AHL20(2)---------->DOF2                                                     ------->TEIL     --------->ATHB51       --------->AHL20(2)                   <---------ANAC46          -------->ATHB1              <--    <---------ANAC55(2)                  <---------AHL20(2)          --------->ICU4             <----   <-------TEIL                         --------->AHL20(2)     --------->At4g35610   --------->DAG2 ----->ANAC55(2)                --------->AtLEC2 ------->TEIL  <---------At4g35610  ---------->DOF2   tgtgatacataaaatgtctactcttaacatgaccatacaaaattttatgtgtatgtatataatggagatgaattattaaagggagaaaaagtgtaattga  20150400                                    <--------ATHB1                  <---------At4g35610                                    --------->ATHB12             ------>ZmHOX2a(1)                    --------->At5g28300               <---------bZIP60(1)    --------->ANAC58           --------->ETT(1)  ---------->ID1           --------->bZIP60(1)    --------->ANAC46     --------->ARR14(2)  <----------DOF2      ==================bZIP_DOF     --------->ANAC58     <---------ARR14(2)  =======================================bZIP_DOF   <-----------RAV1(2)    <------ZmHOX2a(1)----------->HVH21        <----------DOF2--------->ARR14(2) ----ZmHOX2a(1)<---------GLK1(1)   --------->ICU4 <-----------HVH21 --------->At4g35610    <---------ANAC58 -----TOE2(3)  --------->GLK1(1)   <---------ATHB12   --------->TGA1a     ------>ZmHOX2a(1)<---------ANAC58   ggagaaggatttgtcggaactcggtgactttgtctcaatgatttgtgtctttggtcacatcagtttcctcatcttcctcaggcaacttaagttgcttcgt  20150500  Previous    Next  AGI:  At5g49610.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G33530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44950.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 20148500    to: 20149955    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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