Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        ------>ZmHOX2a(2)                                                                     <<<<<<<<<GATA-4                                                                     <<<<<<<<<GATA-1                                                                     <<<<<<<<<GATA-3                                                                     <<<<<<<<<GATA-2                                                                     <------ZmHOX2a(2)                                                                     <---------GLK1(1)                                                                    --------->ARR11(3)                                                                    <---------AGP1                                                               <---------ZAT2    --------->AHL20(2)                                                               --------->ZAT2    <---------AHL20(2)                                                  ===========================HOX2a_HOX2a                                                  <------ZmHOX2a(1) <---------ARR11(3)                                                  ==========================HOX2a_HOX2a        <----------DOF2                       <------MYB46(1)  --------->At4g35610                xxx    -------->P                                <------MYB83     <---------At4g35610               xxxx    ------>MYB83                     --------->YAB1   <---------ARR14(2)     >>>>>>>>>GT-1     <xxxxx    ------>MYB46(1)      --------->YAB1      --------->MYB111(2)   <---------CCA1(2)          ------- -------GLK1(1)      <---------AHL20(2)     <--------P--------->ARR14(2)  ----------->GT1    <------- ------>GLK1(1)     --------->AHL20(2)    --------->ATHB12 xxxxxxxxxxxxxxxx>smallRNA(s)    <---------YAB1   aaatccaaccctttggataatataaaatcatactctccatcatatggttggaggagtatttgctcagctagatctctggttaataaatgacttattaaaa  20145600             --------->GLK1(2)             --------->ARR14(2)        --------->LBD16                  <---------ARR14(2)       <---------HSFB2a(2)           <---------LBD16       --------->HSFB2a(2)           --------->LBD16    --------->ARR14(2)              <---------ANAC58    <---------ARR14(2)              <---------ANAC46  <------MYB46(1)                   <---------ANAC58  <---------DEAR3(2)             --------->GLK1(2)  <------MYB83                   --------->ARR14(2) <---------DEAR3(1)              <---------ARR14(2)                   --------->AHL20(2)      ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxxxx>smallRNA(se3) ------>ZmHOX2a(2)      --------->LBD16                   ------>ZmHOX2a(2) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)<------ZmHOX2a(2)      --------->ANAC46         <xxxxxxxxxxxxxxxxxx xxxxxxxxxxxsmallRNA(i)         <------ZmHOX2a(1)        <xxxxxxxxxxxxxxxxsmallRNA(s)<----------DOF2 --->DOF2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->LBD16  ------------>MYB.PH3(1) --AHL20(2)  <---------ARR14(2)----------->ARR10        <---------HSFB2a(2)    --------->ARR14(2)<---   gagtcggttctggagaatccatctcagtttgggaggatccgtggattccaattcaattcccgagaccagcattaaaaaatggttacgcttttgatccttc  20145700                                                                                    --------->TOE2(3)                                                                                   ----------->GT1                                                                        --------->LBD16                                                                       --------->HSFB2a(2)                                                  <----------DOF2      <---------HSFB2a(2)                         --------->ANAC58        ------>ZmHOX2a(2)    <---------LBD16              xx           <---------ARR11(3)        --------->HSFB2a(2)      <---------DAG2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->GLK1(2)         --------->HSFC1(1)       <----------DOF2     <xxxxxxxxxxxxxxxxxx           --------->ARR11(3)        <---------HSFB2a(2)     xxxxxxxxxxxxxxxx>smallRNA(i)          <-     ----------->GT1     --------->ANAC58      <---------ARR11(3)     ------>ZmHOX2a(2)   <---------ICU4   ----------->GT1      <---------LBD16        --------->ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxsmallRNA(fl3)    --------->MYB52(1)  <------------CBF--------->ARR11(3)<---------ARR11(3) <---- -------DOF2  <---------YAB1        <---------LBD16        <---------ARR11(3)--------->ARR11(3)xxxxxx   tttgaaggtgaaaaatcttatagactcacggacaaatttctggaatattgatcttttacaagagctttttgatccggaagatgtctcgttaataagtgct  20145800                                <---------TOE2(2)                           --------->ARR11(3)                  --------->MYB52(1)             <---------WRKY12  ------>ZmHOX2a(1)          <---------ANAC58--------->GLK1(1)          <---------ANAC46<---------GLK1(1)                                                  xxxxxxxx          <---------ANAC58--------->RVE1(1)                      ----------->GT1             xxxxxxxx         <-------TEIL<------ZmHOX2a(1)                ----------->GT1                      <xxxxxxxxx        --------->ALFIN1 <---------ARR14(2)          <---------HSFB2a(2)                   ----------      <---------ANAC46   --------->ARR11(3)          --------->HSFB2a(2)                  xxxxxxxxxxx      <---------ANAC58   <---------ARR11(3)         <---------LBD16                 --------->SPL7      <---------ANAC58   --------->ARR14(2)       --------->GLK1(2)               <---------SPL7 xxxxxxxxxxxxxx>smallRNA(s)<---------ARR11(3)     --------->ARR14(2)             --------->YAB1 xxxxxsmallRNA(fl3)<---------TOE2(3)              <---------ARR11(3)          <---------GLK1(1) --------ZAT18  <---------MYB52(2)          <-----------GT1      <---------ZAT6 <---------YAB1xxxxxxx ------DOF2<-----------HVH21  --------->TOE2(2)   --------->ARR11(3)          --------->GLK1(1)xxxxxx xxxxxxxxxxxxxxxxx>smallRNA(si3)<---------TOE1(2) <---------ARR14(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ttgcacttgggtgcgtcaactaaggaagatatcctaggttgacatttcacaaaatctggaaaatatacagttaaatttggatatcatacggcgaggttaa  20145900                                                                                       <-----------HVH21                                                                                       <-----------TGA1                                                                                      --------->TGA1a                                                                                      <---------O2                                                                                      <---------TGA2(1)                                                                                      --------->TGA2(1)                                                                                      --------->bZIP60(2)                                                                                      <---------bZIP60(1)                                                                                      --------->bZIP60(1)                                                                                      --------->O2                                                                                      --------->ANAC46                                                                                      <---------ANAC55(2)                                                                                      <---------ANAC58                                                                                      --------->ANAC58                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       --------->ANAC55(2)                   --------------->AGL15                                              <---------ANAC58                   <----------DOF2                                                    --------->ANAC58                   <---------------AGL15                                             <-----------STF1                  <-----------------AGL3                                    ------>NtERF2   =========                  ===================================================================================                  <-----------------AGL1                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <-----------------AGL2                        ----------->GT1 <xxxxxxxxxxxxxxxxxxxx              <----------DOF2                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<-----------GT1 xxxxxxxxxxxxxx>smallRNA(si3)                  ---------->DOF2---------->DOF2--------->ANAC46 xxxxxxxxxxxxxx>smallRNA(le3)                  =================================================bZIP_DOF xxxxxxxxxxxxxxsmallRNA(fl3)          ---------->DOF2   <---------YAB1  <-----------HVH21   --------- ->GT1        <---------DAG2         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <------NtERF2  <xxxxxxxxx xxxxxxxxxxxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)----------------------->TaNAC69(2) xxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(s)<---------------AtSPL8--------->MYB59 xxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(s) ==================================bZIP_DOF   aaactttggatgctaacttttctttttttggcccagacatcaaagtcttaaaagcattctcatggaaagtacaatgtccgcccaagttacgtcacttctt  20146000                                                                                         <---------HSFB2a(2)                                                                                         --------->HSFB2a(2)                                                                                     <---------ZAT18                                                                                 --------->ALFIN1                                                                                 <-----------RAV1(1)                                                                                 <---------AtMYB61                                     --------->TOE1(2)                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        --------->ANAC46   --------->ARR14(2)                 <---------ARR14(2)                       --------------->AGL15                                  --------->ARR14(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       <---------------AGL15         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      ----------------->AGL1     --------->LBD16           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      <-----------------AGL1   <---------LBD16            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <-----------------AGL2   >>>>>>>>>>AtSR1            <---------At4g35610                   --------->ZAT18   --------->TOE2(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <------ZmHOX2a(1)--------->ZAT18    <-----------ARR10 ----------------->AGL2---------->DOF2        xxxxxxxxxxxxxxxx>smallRNA(s) ======================================MADS_MADS--------->ANAC46 --------->CCA1(2)  xxxxxxxxxxxxxxxxx =======MADS_MADS --------->ALFIN1 --------->GLK1(2)<---------KAN4(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxsmallRNA(si3) --------------->AtSPL8 --------->ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------>AGL15   <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------REM1(1)  <---------HSFC1(1) xxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxsmallRNA(i) <-----------HVH21 --------->At4g35610   gtagcaaattttagcgggatgtgtaccagtaatggacaatctacgaaaacgcggaataaactgtgagataggatgtagcagatgtggtgctctagaagaa  20146100                                                                         <------ZmHOX2a(1)                                                                       --------->LBD16                                                                       <---------TOE1(2)                                                                      <---------HSFB2a(2)                                                                      --------->HSFB2a(2)                                                               ------>MYB83                                                               ------>MYB46(1)                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                             --------->TOE1(2)             <---------DAG2                                  --------->TOE2(2)             <----------DOF2          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ANAC58         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<-----------RAV1(2)          --------->ANAC58        <-----------HVH21      <---------ARR14(2)          --------->ANAC46   <---------YAB1       <-----------HVH21   <---------LBD16        <---------ALFIN1   --------->YAB1         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ------->GAMYB        <---------ICU4        <----------DOF2  <-----------HVH21------>ZmHOX2a(1)     --------->MYB46(3)   <---------ATHB12      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     ------->TEIL   <-----------GT1        --------->ICU4--------->CCA1(2)--------->ARR14(2)        ================== xxxxxx>smallRNA(fl3)   --------->WOX13(1) --------->MYB59--------->GLK1(1)    <-----------GT1 ------   accattaaccacacgcttttcttatgcaatcatgctcgtcagatttaggcactttcacagatacctacggtcccaggaaaatttccttatgcatctatat  20146200                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                            ----------                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        --------->ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                --------->ANAC58               --------->AHL20(2)                                                     --------->ANAC55(1)               <---------AHL20(2)                                                     --------->ANAC55(2)          <------ZmHOX2a(2)<---------CCA1(2)                           --------------->AGL15      <--          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <---------------AGL15     ----         <xxxxxxxxxxxxxxxxsmallRNA(i)                                <------MYB83 --------->ANAC58---   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             ----------->GT1  --------->ANAC46   <---------ARR14(2)  <---------ANAC46                              <------MYB46(1)  <---------ANAC55(2)   --------->ARR14(2) ---------->ID1                                --------->MYB59  <---------LBD16 ================HOX2a_HOX2a                                 --------->YAB1       --------->ANAC58--- --->ARR14(2) --------->AHL20(2)            <-------TEIL <---------AtLEC2       ---------->DOF2  ----   atgcaaatttggatcatttattttggcgcatacctttggaatttgattcatcttcatttccatggataatttggtatatttggaaagcacggaatgaaaa  20146300                                 ------>ZmHOX2a(2)                                <------ZmHOX2a(2)                               --------->ARR11(3)                               <---------ARR11(3)                              <---------GLK1(1)                          <---------HSFB2a(2)                          --------->HSFB2a(2)                        ================HOX2a_HOX2a                        ===============HOX2a_HOX2a                        ------>ZmHOX2a(1)                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                    --------->ARR11(3)                    <---------ARR14(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    --------->YAB1  --------->ARR14(2) ->GT1              <---------GLK1(2) -------ARR11(3)    <---------ARR14(3)           ---------->DOF2 ----->RVE1(1)      --------->ARR14(3)        <------NtERF2                    --------->At4g35610 ------>ARR11(3)    <---------ARR11(3)      <---------ANAC46                   <---------At4g35610 ------>GLK1(2)   ----------->ARR10        <---------LBD16            <---------HSFB2a(2) <---------At4g35610 ----->CCA1(1)  ---------->DOF2--------->AGP1--------->LBD16          --------->HSFB2a(2) --------->At4g35610   aatctttgataatgtggataaagatcctctagagatcttacatttggcggaaaaagagtaagagtcagacttgtggaagtctgctcaacttgagcttcac  20146400                                            <------NtERF2                     xxxxxxxxxxxxxxxxxxxxxxx                                          <---------RAP2.6(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                         --------->ZAT18                   --------->GLK1(1)                                        --------->ALFIN1                   <---------GLK1(1)      <xx                                      <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------HSFB2a(2)       ----                              ------>ZmHOX2a(2)                        --------->HSFB2a(2)     ------                            <---------ARR14(2)                        <---------LBD16          ------              <----------DOF2<------ZmHOX2a(2)                    --------->YAB1               <-----         <------MYB83       --------->ARR11(3)                    <---------ICU4               <-----         <------MYB46(1)    --------->ARR14(2)                    -------->ATHB1               <-----        --------->MYB59     <---------ARR11(3)       <----------DOF2<---------YAB1             ------   <---------AHL20(1)     xxxxxxxxxxxxxxxx>smallRNA(i)           --------->ICU4       <---------ANAC46   --------->AHL20(2)     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------YAB1 <---------MYB52(1)<xx   <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <---------ATHB51 <xxxxxxxxxxxxxxxxxx   aacaaaaaatttggttctttcaatttggaagatcgtaatcgagtgcggcatttttctttagacaacaattattctggatatcgttgttttgtagatggat  20146500  Previous    Next  AGI:  At5g49590.1    Description:  unknown protein Range:  from: 20145962    to: 20146780    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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