Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           -------->HAHB4         --------->ATHB12         --------->ATHB51        <---------ATHB51                        ---------->DOF2        --------->ICU4                        <---------YAB1     <---------AHL20(2)                     <---------ICU4     --------->AHL20(2)                     -------->ATHB1                        <---------ZAT2     --------->AHL20(1)                     <--------HAHB4                        --------->At4g35610    --------->AHL20(2)                      --------->ATHB12             <---------YAB1 --------->ICU4                             --------->YAB1            ----------->TGA1             -- ---->YAB1                                 --------->ICU4           <------ZmHOX2a(1)   --------->ARR14(2) --->HAHB4                                --------->GLK1(2)  --------->ICU4       <---------At4g35610 ----YAB1-------->ATHB1                ------->GAMYB         <---------YAB1--------->ARR14(2)      <- --->ICU4<---------ICU4             ----------->RAV1(1)    <---------At4g35610    --------->ZAT2----- ----->GT1                         --------->MYB46(3)   <---------At4g35610<---------ARR14(2)  <----- ->YAB1 <---------YAB1        ----------->GT1--------->TOE2(3)    <---------TOE2(3)     <---------ARR14(2)   ataaaaattaattattgctacaatgcatcagtctgtaacaacagaatcattagagcgacgctgatgatgaggatgacgatactcagctcggattttagat  20124000                                    --------->ZAT2                                    --------->At4g35610                               <------ZmHOX2a(2)                              --------->ARR11(3)                              <---------ARR11(3)            <---------HSFB2a(2)                             --------->GLK1(1)  ----------->RAV1(1)                                 <  ====================================HOX2a_HOX2a <---------ALFIN1                                ---  <------ZmHOX2a(1)    <<<<<<<ZML2  <---------At4g35610     --------->HSFB2a(2)               ------- ------->HSFB2a(2)  <---------HSFC1(1)          ------>NtERF2                                 ------- --------HSFB2a(2)  --------->HSFB2a(2)        ----------->HVH21                       <-------TEIL-- ---->GLK1(2)       --------->HSFC1(1)         --------->ANAC46                 ------>ZmHOX2a(1)---- ----GLK1(2)        <---------HSFB2a(2)        <---------ETT(1)              ---------->ID1   -------   tctaggacagagacatatcgatctagaacagagatcacagcttcaaactccgacacttgtttctcgatagcatccatttgtcctacaaattcatccaagc  20124100                                                  ----------->HVH21                                                  --------->TGA2(2)                                                 <-----------TGA1                                                 <-----------HVH21                                                --------->ANAC46                                                --------->ANAC58                                                --------->bZIP60(2)                                                --------->ANAC55(1)                                                <---------bZIP60(1)                                                --------->ANAC58                                                --------->ANAC55(2)                                                <<<<<<<<<<HY5                                                <---------ANAC55(2)                                                --------->O2                                                --------->bZIP60(1)                                                <---------TGA1a                                                --------->TGA1a                                                <---------O2                                               <-----------STF1                                               <-----------bZIP911(1)    --------->ANAC58                                            ------>NtERF2                --------->bZIP60(1)                                            <-----------HVH21            --------->ANAC58   <---------DAG2                          --------->RAP2.6(2)           --------->ANAC46   <----------DOF2                       --------->At4g35610          ----------->TGA1 ---------ALFIN1                         <---------ZAT2         <---------SPL7 --->NtERF2                              --------->ZAT2  <---------CCA1(2) -->ANAC46                               <---------At4g35610   --------->TOE1(1) -->ANAC58                               ----------->RAV1(2)--------->YAB1         <---------TOE2(2) ------->MYB46(3)          <---------ARR14(2)  <-----------bZIP910(1) ----------->HVH21<-------TEIL ----->RAP2.6(2)           --------->ARR14(2) <---------ALFIN1 --------->TOE2(1)   <---------TOE1(2) -->ANAC58     <---------At4g35610     <-----------RAV1(2)<---------ARR11(3)      <-----------RAV1(2)   caccactttttgatttcatctgttctgcgaaaactctgagcccagctgccacgtcacccatatcatcgtactctgacgcaactctcaggttcatcttctc  20124200                  --------->MYB52(2)              <---------MYB46(3)                     <---------LBD16             <--------P                            ------>ZmHOX2a(2)            <-------GAMYB                         <------ZmHOX2a(2)           <---------MYB46(3)                     --------->CCA1(2)      <---------HSFB2a(2)                        <---------ARR11(3)                                 -     ------>ZmHOX2a(2)                           <---------ARR14(2)                                 <    <------ZmHOX2a(2)                            --------->ARR11(3)                                 <   <---------ARR11(3)           <-----------GT1  --------->AGP1                <---------LBD16      <   --------->ARR11(3)        <---------AHL20(2)  <---------AGP1 --------->AHL20(2)             <-----   <---------AGP1 <---------MYB46(3)             --------->ARR14(2)   ----------->GT1         -------   --------->AGP1--------------->AtSPL8         <---------CCA1(2)<---------AHL20(2) <---------WOX13(1)   caatagatctagatggttgttcgttccctatttttatccaattcaatttcagatctgtggaaacaaataaatctgtaaaatttcggattgattttcacct  20124300                                                                                       <---------ARR14(2)                                                                          ------>NtERF2--------->ARR11(3)                                                                          --------->LBD16                                                                         --------->ANAC58                                                                      <---------ARR14(2)<---------RVE1(1)         --------->WRKY38(1)                                          --------->ARR14(2)<---------CCA1(1)      <---------ARR14(2)                                         <---------ANAC46      <---------ARR11(3)      --------->ARR14(2)                                         ----------->GT1       --------->ARR14(2) -------->ZAT2                                             <------ZmHOX2a(2)          <------ZmHOX2a(1) ---------GLK1(1)                                    --------->At4g35610 --------->ANAC46   <-------- ---------At4g35610                  <---------ARR11(3)    ==================================HOX2a_HOX2a ---------ZAT2                       <---------GLK1(2)    <---------ARR11(3)        <---------TOE2(3) ----LBD16<-----------GT1            --------->ARR11(3)   --------->ARR11(3)    --------->YAB1    <-- ---->RAV1(2)                      ----------->ARR10 <---------At4g35610 --------->ANAC58   <--------   ggagctcggatttgaccatagatgaaacactcgtgaatagattttgtagcgattcagctagatcatctcgtgaatccgccattgatgaggatatttactt  20124400                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                   <-                                                                                                   --                                                                                                   --                                                                   <---------MYB46(3)              --                                                            ----------------->AGL1                 <-                                                            ----------------->AG                 <---                                                         <----------DOF2                         ----                                           <-------GAMYB--------->HSFB2a(1)                 ---------                                          <-----------RAV1(1)--------------->AGL15    --------->MYB59     ---------->DOF2         ------------>CBF           <---------HSFB2a(1)           <---------TOE2(3) ---GT1          ---------->DOF2     <----------DOF2 <---------ZAT18             --------->ICU4------ --------DOF2    *TSS       <<<<<<<<<<<<<<<<<LFY     --------->ZAT18          <---------ZAT6--------- -AHL20(2) ---------->DOF2--------->AHL20(2)<---------MYB52(1)  --------->ARR14(2)    <---------TOE1(3)   cttttcgcaaagacaaagacaaagacaaataaacaatggctcttctgttgtttagggcactttccatatttgttgaattagtgatatttaggttaagcta  20124500 --------->ALFIN1 ------>MYC3 ------>MYC2 -------MYC2 -------PIF5 -------MYC3 ------>MYC4 -------MYC4 ------>PIF5 --------TGA1a ------->ANAC46 ------->O2                                                ----------->RAV1(1) ------->TGA1a                                            --------->ANAC58          --------->ANAC46 --------O2                                               --------->ANAC58        --------->MYB46(3) ------ALFIN1                                             --------->ANAC46        <---------MYB52(2) ----->REM1(1)                                            ----------->HVH21   --------->At5g28300 >ANAC58                                                 --------->SPL7      ----------->GT1 --->CCA1(2)                                  --------->ANAC58             --------->ZAT14 >ANAC58   <---------YAB1                     --------->ANAC58             <---------ZAT14   cacgtggaggcttattattcgttgatatcaactattgtccatgtctgtaagcctctccctacgacagaggttttcagagcagtaacaaacaacttacaca  20124600                                                                                          --------->ANAC46                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                       ------->TEIL                                                                                     --------->ZAT18                                                                                     <-------TEIL                                                                          --------->ARR14(2)      ---                                                                          <---------ARR14(2)<--------                                                                   --------->ZAT14   <---------ZAT18                                                                   <---------ZAT14   --------->ZAT14                                      --------->GLK1(2)           --------->ALFIN1  --------->ALFIN1           <---------ZAT14           <---------GLK1(2)           ------->MYC3      ------->PIF5   ---           --------->ZAT14     --------->ANAC46                  <-------MYC3      <-------PIF5  <---      <---------TOE2(3)    <-----------GT1                       <-------MYC2   <---------HSFB2a(2)      <---------YAB1       <---------YAB1<----------DOF2         ------->MYC2   <-----------RAV1(2)-- <---------ZAT6           --------->KAN4(2)                      ------->MYC4   --------->HSFB2a(2)<-   tgagagttaacattgcacagtctgagattatactcgctagattcttttcaagtcttgaagaacaacatgtgcagcgtttcttccaggtgcacccataact  20124700                        --------->ANAC58                 <---------At4g35610            <---------GLK1(1)            <---------At4g35610       <------ZmHOX2a(1)<---------ALFIN1     --------->LBD16    --------->ANAC46    <-----------RAV1(2) --------->ANAC58    ==============================RAV  ------>NtERF2  =================RAV --------->DEAR3(1)   ----------->RAV1(1) ------>DEAR3(1) ----------->RAV1(2) -CCA1(2)  ----------->ARR10                        --------->HSFB2a(2) ------>ANAC46   --------->At4g35610      ---------->DOF2 ------LBD16--------->ZAT2            <----------DOF2                             ---------->DOF2  -- ---->NtERF2--------->At4g35610    <---------ARR11(3)                  --------->ANAC46         ----- --------ATERF1(1)  ------>NtERF2  --------->ARR11(3)       <-----------GT1    ----------->RAV1(1) <-   ccgcctccaggatgagctccgctgccacacaagtagagacctttcaaagggcttctgtaatttgacctgtttcacacagtccaacaaagttttgaatttc  20124800                                                    ----------->HVH21                                                   <-----------HVH21                                                  <----------DOF2                                                  ------>ZmHOX2a(1)                                               ------>MYB83                                           --------->SPL7                                           ------->TEIL                                        =====================bZIP_DOF                                        --------->ANAC58                                        <---------TGA1a            ---------->DOF2             --------->ANAC58         --------->YAB1                 --------->ANAC55(2)         ----------->GT1                <---------ANAC55(2)                                       ---  --------->YAB1                       --------------->AtSPL3                                  ------ <---------YAB1                        --------------->AtSPL8                                  ------ ------->YAB1                       <-----------HVH21               <------ZmHOX2a(1)         <------ ---->YAB1  ======================================bZIP_DOF <---------ZAT18                   <------NtERF2 --------ICU4                  <---------LBD16 ------>MYB46(1)   <-----------RAV1(2)        ------>NtERF2   ataatcataaatcgtaaagactgttttgagtacttcggagtcacgtaccatcctttcacagggcgcatcaggaagagagagtctaatcccatggcaccgt  20124900  Previous    Next  AGI:  At5g49550.1    Description:  similar to hypothetical protein [Vitis vinifera] (GB:CAN71738.1); contains domain gb def: Hypothetical protein (PTHR10668:SF1); contains domain PHYTOENE DEHYDROGENASE (PTHR10668) Range:  from: 20123879    to: 20124417    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g49555.1    Description:  amine oxidase-related. similar to CRTISO (CAROTENOID ISOMERASE), carotenoid isomerase [Arabidopsis thaliana] (TAIR:AT1G06820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22845.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22844.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ57569.1); contains InterPro domain Phytoene dehydrogenase-related protein; (InterPro:IPR008151); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076) Range:  from: 20124455    to: 20127862    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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