Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------MYB52(1)                                            <---------LBD16                                            <------NtERF2                                      <--------P                                     <-------GAMYB                                     <---------ANAC58                                    <------MYB46(1)<---------ANAC58                                    <------MYB83  <------NtERF2                                    --------->MYB52(2)                                    <---------MYB46(3)                                    --------->MYB55(2)                                    <---------DEAR3(2)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <---------MYB52(1)                                 <-------GAMYB--------->LBD16                                <---------ANAC46 ------>NtERF2                                <---------ANAC58 <---------MYB46(3)                                <---------ANAC58 --------->ABI4(2)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                        xxxxxxxxxxxxxxxx>smallRNA(s)                        xxxxxxxxxxxxxxxx>smallRNA(i)            --------->LBD16                       xxxxxxxxxxxxxxxx>smallRNA(s)<---------ANAC46                       ------>ZmHOX2a(2)    <-----------RAV1(2)<---------DEAR3(1)                      <------ZmHOX2a(2) <------MYB83           <xxxxxxxxxxxxxxxxsmallRNA(i)                      <---------GLK1(1) <------MYB46(1)        --------->DEAR3(1)                     --------->ARR11(3) <---------ATERF1(1)   <---------LBD16                     <---------ARR11(3)<---------DEAR3(1)     <------NtERF2                        <-                     <---------AGP1<---------AtMYB61          --------->ATERF1(1)                  <-          ----------->GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<------NtERF2                     <-         --------->DAG2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------RAP2.3(1)               <-----        ---------->DOF2xxxxxxxxxxxxxxxx>smallRNA(i)<---------ANAC58                            <----- -------DOF2        <---------CCA1(2)<---------ANAC58    <xxxxxxxxxxxxxxxxsmallRNA(i)   ------>ZmHOX2a(1)   ttttctctctaaaagtaaatctagatctcagtttgcgttggttggctccggtggcttccatagcgccggagctatgcctctcttgctctcctgtaaactt  20079000                                                                                            <xxxxxxxx                                                                                 <---------MYB46(3)                                                                                 <------MYB83<xxxxxxx                                                                                 <------MYB46(1)                                                                                <---------AtMYB61                                                                                --------->MYB111(1)                                                                                --------->MYB59                                                                                <---------MYB46(3)                                              --------->ALFIN1                  --------->MYB111(2)                                    --------->ICU4                              --------->MYB55(2)                                <---------ZAT14                                <--------P <----------     <----------DOF2            --------->ZAT14                               <---------ANAC46 --------TOE1(3)       <---------ANAC58    <---------TOE2(3)                  <---------ANAC58 <----- --------TOE2(3)       <---------ANAC58<----------DOF2                        <---------ANAC58 <----- --------YAB1         <-------TEIL----------->GT1                             <-------GAMYB<-------GAMYB -----DOF2   <------MYB83 <----------DOF2  <---------TOE1(3)                 <---------MYB46(3)<----- ----DAG2    <------MYB46(1)    --------->ZAT18<---------MYB46(3)        <-----------RAV1(1)<--------   tatggttcttttgtttggtttatgtgcgttttagtgtagtgatttaaggtggttcttagatggctcatgttgtttttgtgggttggtcgtctctgttgct  20079100                                                                   <----------DOF2                         <-----------GT1                          <---------ANAC58                    <------MYB46(1)                               <---------ANAC58                  < xxxxxxxxxxxxxxxsmallRNA(le3)                                  <--------P                         <-- xxxxxxxxxxxxxxxsmallRNA(si3)                                 <-------GAMYB                   ------>MYB46(1) -RAV1(1)           <------MYB83                             <---------MYB46(3)               ------>MYB83 ----ANAC58         ----------->GT1                          --------->MYB55(2)              ------>ZmHOX2a(1) ----ANAC46     <---------ARR14(2)                          <---------AtMYB61            ------>ZmHOX2a(2) ----ANAC58     --------->ARR14(2)                       <---------AtMYB61              <---------GLK1(1) -MYB52(1)   ------>ZmHOX2a(2)                     --------------->AGL15       <---------LBD16-------   tgtagcgcctcttgatccgatttggtttaaccttcttctcgtttagcctattaccaggtatggtggttgctttcgcttctgtccggttcgatctcctacc  20079200                                                                      ------>ZmHOX2a(2)                                                                     <------ZmHOX2a(2)                                                                    --------->ARR14(3)                                                                    --------->ARR11(3)                                                           ------>ZmHOX2a(2)                         --------->ATHB12                 <------ZmHOX2a(2)               <---------MYB46(3)                        --------->ARR14(3)              <---------AtMYB61                          <---------ARR14(2)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       <-----------ARR10              <------MYB46(1)              --------->ALFIN1                           <---------AGP1                 <------MYB83            --------->ALFIN1                             <---------ARR14(3)           <---------ANAC46          <---------ANAC46                               --------->ARR14(2)         <---------MYB46(3)          <---------ANAC58    <------MYB83               <---------ARR11(3)     --------->ATHB12          <---------ANAC58<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ARR11(3)<---------ANAC58         <---------DEAR3(1)   <------MYB46(1)           --------->RVE1(1)      <-------TEIL ---------CCA1(2)      <---------WOX13(1)            ---------->DOF2<---------ARR14(3)<---------ANAC58 -------MYB52(1)    <---------YAB1         ---------->ID1--------->ARR11(3)<---------TOE1(2) ->P  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------YAB1  <-----   gtttatcttcttcggtgtggttcagattgatttggttctctccttgtctctactctaaagatcttatcgagatctcatatgttcattggctggtttcctt  20079300                                                --------->ALFIN1                                              <------MYB83                                              <------MYB46(1)                                            <--------P                                        <---------ANAC46                                     --------->LBD16                                    --------->HSFB2a(2)                                    <---------ANAC46                                    <---------LBD16                                    <---------HSFB2a(2)                                 --------->ARR14(2)                                ------>NtERF2<---------AtMYB61                    <----------DOF2<---------LBD16       ---------->ID1                       <------                <---------GLK1(2)<---------ARR14(2)  <---------ANAC58                  <xxxxxxxxxxxxx             --------->YAB1     <---------At4g35610  <---------ANAC58               <xxxxxxxxxxxxxxxx            <<<<<<<<<ARR1       --------->At4g35610  <---------ANAC46               <---------MYB52(1)            <<<<<<<<<ARR2     <---------RAP2.6(2) ----------->HVH21 --------------------->WRI1<------            <---------ATHB12  ----------------->AGL1 <---------bZIP60(2)<---------ARR11(3)    <------     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->ALFIN1    <----------DOF2      <---------DEAR3(2)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------LBD16 -----DOF2--------->WOX13(1)<-----------GT1<---------ZAT14  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    <   tgaggcgctaaacaatcatattctttgattttgccgctccgggagtgtaggtgtgacttgtcgtctttggcctagttcttctcgccggtatggattcctt  20079400                                                         <------MYB46(1)                                                      <---------ANAC58                                                      <-------GAMYB                                                     <------MYB83                                          <---------At4g35610     ------>ZmHOX2a(1)  <----------DOF2                                          --------->At4g35610<---------GLK1(1)      <---------ANAC46                                         --------->DEAR3(1)  --------->GLK1(1) --------->ALFIN1                                       ------>NtERF2 <------MYB46(1)         <xxxxxxxxxxxxxxxxsmallRNA(i)       --------------->AGL15          <---------PCF2<---------AtMYB61       --------->ANAC46       <---------------AGL15         <---------ABI4(2)<---------ANAC58     <---------LBD16 ---ANAC46                           <------NtERF2<---------MYB52(1)       --------->SPL7 xxxsmallRNA(i)    <---------ZAT6    --------->ATERF1(1) <------MYB83     <---------STY1(1) xxxxxxxxsmallRNA(fl3)              <---------ATERF1(1)<--------P<---------ANAC58   <---------ANAC58 ---ANAC58   --------->MYB59 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ANAC58   <---------ANAC58 ---ANAC58   <---------TOE2(3)     --------->ALFIN1<---------MYB55(1)     --------->MYB52(1)        - ---------GLK1(1)*TSS     --------->YAB1<------NtERF2<---------MYB46(3)   --------->STY1(1) ---------   ggaactcttctatgtaaggtagtcttcatcgtaataggtggcaccgctgtccgtttggttgggagttccttatcccctacggagtggcttgatgtaaagc  20079500                                                                      <----------DOF2                                                              <---------ANAC58                                                              <---------ANAC58                                                              <-------GAMYB                                                             <---------MYB46(3)                                 --------->ARR11(3)         <---------AtMYB61                          ----------->HVH21            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         <---------WOX13(1)           <--------P  <---------ANAC46        <---------------AGL15    <---------ARR11(3)  <-------GAMYB<---------ANAC58        --------------->AGL15  ----------->ARR10xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <----------DOF2      <-------GAMYB          --------->ATHB12<--------P                         xxx  <---------DAG2      --------->ALFIN1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)              <xxx ----->NtERF2       <-----------RAV1(1)<---------ANAC46<---------MYB46(3)                      <----- ->DOF2 <----------DOF2<---------MYB46(3)    <<<<<<<<<<<<<<<<<LFY <---------ANAC58          <--------   tctgcctttcctttgtctggtaatgtggttgacgagatattgtgtttaaacattgggttgttttggttgcttctttgtttcagttttaaaattttttctt  20079600                                                                                               ------                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                             <-------GAMYB                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            ---------                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                ---------                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <--------                                      <---------MYB52(1)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <------NtERF2 <---------ZAT6                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------At4g35610<xxxxxxx                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------DEAR3(2) <xxxxxxxx                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------DEAR3(1)<--------P                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <---------ANAC58                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <---------ANAC58                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <----------DOF2   xxxxxxxxxxxxxxxxxxxxx                  --------------------->WRI1                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <---------ANAC58   <----------DOF2        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------TOE2(3)   xxxxxxxxxxxxxxxx>smallRNA(i)      <---------ARR11(3) <xxxxxxxxxxxxxxxxxxxxxx     <---------TOE1(3)  <xxxxxxxxxxxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<----- xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(si3)<----------DOF2         <---------GLK1(2)------>NtERF2 <---------TOE1(3) -----DOF2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---GT1    <------------------------ANAC81  <----------DOF2--------->ARR11(3) xxxxxxxxxxxxxxxxxxxxxxx   tgtatgtaaggtttgttttgccttgtttgcttccctttcctttaggctttgtttccgagattatcttttaatcgtcggcttatatttctagggttagttg  20079700         <----------DOF2       <------NtERF2      xxxxxxxxxxxxxxxx>smallRNA(i)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->LBD16      ------>NtERF2     --------->ATERF1(2)     <---------DEAR3(1)     --------->DEAR3(1)     <---------ATERF1(2)    <---------LBD16    --------->DEAR4(2)    --------->ATERF1(1)    xxxxxxxxxxxxxxxx>smallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----->GT1 xxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                --------->AHL20(2) xxxxxxxxxxxxxxxsmallRNA(le3)                                                  <---------AHL20(2) xxxxxxxxxxxxxxsmallRNA(le3)                                                --------->AHL20(2) >MYB111(1)                         <---------AHL20(2)                     --------->AHL20(2) >MYB52(2)                          --------->AHL20(2)                     <---------AHL20(2) -MYB46(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        --------->AHL20(2) xxxxxxxxxxxxxxxxsmallRNA(se3)      <---------AHL20(1)                 --------->AHL20(2) xxxxxxxxxxxxxxxsmallRNA(si3)    --------->YAB1                        <---------AHL20(2) xx>smallRNA(le3)               <---------YAB1                     --------->AHL20(2) xsmallRNA(se3)          <---------ARR11(3)                      --------->ANAC58 ----MYB46(3)           <---------GLK1(1)       ----------->GT1  --------->ANAC58           <-------- >smallRNA(le3)  <---------AHL20(2) --------->AHL20(1)           ----------->GT1--------->AHL20(2)  -   ttaatcgccggctttgtaatttatcgaaatctctataataaattttcagacgataaaaaaaaaaaacaagaaaataaataaataaataacatgaacgaca  20079800                                                  <---------------------WRI1                                               <---------YAB1            <---------MYB55(2)                                          ----------->GT1                <---------ATHB12                                        --------->SPL7                   --------->MYB46(3)                                    <---------------AtSPL3              --------->ANAC46                              --------->ZAT14  --------->ICU4           ------>MYB83               <-                    --------->ARR11(3)<---------SPL7    <---------MYB52(2)                         <- --------->DAG2   --------->ICU4    <---------------AtSPL8              ------>MYB46(1)          ---- --ID1            <---------YAB1   <------------------SPL14             -------->P     --------->AHL20(2) --------->DOF2 --------->YAB1<---------ZAT14--------->YAB1  ---------->DOF2         <----------DOF2   aaaaaagtttcacatcgatgatgattttgtactgtagttttgtacggtcataatagaaacaaacaaagaagtccaaccaatgggagactttaaatttgag  20079900  Previous    Next  AGI:  At5g49465.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 5.0e-21 P-value blast match to GB:AAA67727 reverse transcriptase (LINE-element) (Mus musculus) Range:  from: 20077068    to: 20079417    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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