Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------------AtSPL8                           -                                                   --------------->AtSPL8                           -                                                   --------------->AtSPL3                          <-                                            <------NtERF2           ---------->DOF2               <--                                           --------->MYB52(1)      --------->AtMYB61      --------->WRKY45      <---------MYB52(1)              --------->GLK1(1)           ----------------->AGL1  --------->WRKY38(1)    <---------MYB46(3)       <------NtERF2 ------>NtERF2          <-----------------AGL1  --------->WRKY12  ------>NtERF2            <---------DEAR3(1)--------->DEAR3(1)   ----------------->AG   <---------MYB52(1) --------->LBD16         <-----------HVH21--------->DEAR3(1)     ------>MYB83           <-------GAMYB ------>NtERF2         <---------TOE2(3) --------->MYB46(3)      -------->P<------ZmHOX2a(1)>>>>>>>>>WRKY6 ------->ATERF1(1)<---------MYB52(1) --------->ARR14(2)          ------>MYB46(1)       <---------ANAC46 --------LBD16   <---------RAP2.6(3)<------ZmHOX2a(1)           ------>ZmHOX2a(1)  <-----------HVH21-   ctccggccgtttgaatagccgttttgaggtcggagacaggatagccaccgaagatggtaccatttcctaccaaagcaggaagctctgtcccgttgactat  19991300            --------->LBD16           <---------ANAC46          <---------LBD16        --------->ALFIN1      <-----------RAV1(1)    <---------At4g35610                      ------->GAMYB    --------->At4g35610        <---------ANAC46    ----------->RAV1(2)        <-----------RAV1(1)   ------->TEIL             <---------MYB52(1) -------->ANAC46       <---------GLK1(1)    <---------MYB52(2)           --------->ANAC46 -------->ANAC58       --------->GLK1(1)    <---------MYB111(2)       <---------REM1(2) --------TOE2(3)     <------ZmHOX2a(1)      --------->MYB46(3)       <-----------HVH21 ---------GT1<------NtERF2 <-------GAMYB    <---------MYB55(2)    --------->ZAT6                   -- -------->ANAC58   <---------TOE2(3)      ----------->RAV1(1)   <-----------GT1           -----------   taacgcatctgtggcggaaataaggatttcgttgtgttggaatccaacaaacactctccattcttttaactcttcacggccattgtttagaaccgtaaga  19991400                                                                                               ------                                                                                              ------>ZmHOX2a(2)                                                                                             <------ZmHOX2a(2)                                                                                             --------                                                                                            <--------                                          --------->ARR11(3)                                ---------                         <---------DEAR3(1) ------>ZmHOX2a(2)                               <--------                        --------->At4g35610<------ZmHOX2a(2)                                ---------                      ------>ZmHOX2a(2)   --------->ARR14(2)                                ---------                    --------->ARR14(2)    <---------ARR11(3)                                <--------              <---------TOE2(3) <---------SPL7                                            -----------              --------->DAG2   <---------ANAC58 <---------ANAC58                   <-------GAMYB             ---------->DOF2   <---------ANAC58 ----------->HVH21       ----------->GT1 ---------->DOF2 --------->HVH21    <---------ARR14(2)    <---------ARR14(2)   <---------ATHB12   <---------ANAC58 >GT1   --------->MYB46(3)     <---------ANAC46 <---------ANAC58--------->YAB1    <---------ANAC58   actgactcgaaccgataaggctgatcggctgtgtcgttcggagggatcttgcgaccgagtatgaaatcataagagagaaatattccgttgcaaagatctg  19991500                          --------->LBD16                         --------->ATERF1(2)                         <---------ATERF1(2)                         <---------HSFB2a(2)                         --------->HSFB2a(2)                       ------>NtERF2                      --------->ALFIN1                     <-------PIF5                     ------->PIF5                    <---------At4g35610                    <---------ATERF1(1)                    <---------DEAR3(2)                   <---------DREB2C(2)                   <---------ATERF1(2)                   <---------DEAR3(1)                   --------->ATERF1(2)                  ----------------->AGL1                  --------->ATERF1(1)                  <------NtERF2                 ------>NtERF2                 --------->ABI4(2)                --------->ALFIN1                ----------->HVH21               ------->PIF5 --------->ARR14(2)               --------->ATERF1(1)               <-------PIF5<------NtERF2              --------->At4g35610              <---------ATERF1(1)              <---------DEAR3(2)    <---------WOX13(1)    <---------GLK1(1)--------->ATERF1(1) ----->HVH21  <---------DEAR4(2)  --------->ATHB12 ->CCA1(2)    <---------At4g35610 <---------ICU4--------->ZAT2 -ARR14(2)   <---------DEAR3(1)  <---------YAB1 <---------At4g35610       --------->At5g28300 >AGP1       <---------MYB46(3)  --------->ICU4 --------->At4g35610      ----------->GT1 -AGP1      <------NtERF2--------->ETT(1) <------NtERF2                <---------At5g28300 >ARR11(3)  --------->ATERF1(1)--------->YAB1<------ZmHOX2a(1)        --------->MYB52(1)      ------- >ARR14(2) ------>NtERF2<------NtERF2 <-----------HVH21              ----------->HVH21  <---------ALFIN1 -ARR11(3)<---------PCF5<---------LBD16 --------->ETT(1)     <---------DEAR3(1)         --------->ZAT6 >ARR10   <---------DEAR3(1)<---------ARR14(2)  <---------ZAT2  --------->ALFIN1      <-----------GT1   atggagaaatcggggccggtgccggtgccggaaccatgattgtcggaggaagctgagacatagacggtggagtaacggtgaataagagtaacactccgaa  19991600                >>>>>>>>>>>>>>>>>LFY               <---------ANAC58              --------->ANAC58                     <---------ANAC58              --------->ANAC58               <---------TOE1(3) --------->MYB52(1)                   ---------->DOF2     ---------->DOF2 <---------ARR14(2)               --------->LBD16  <---------ANAC46 -->LBD16<------ZmHOX2a(1) <----------DOF2   <---------TOE2(3)        *TSS            <---------AHL20(2)   gaatatcggaaggagaacgcccattgtgtctttctccagagaaagttaagtttacttggagaaagaacccaaatggtttttgttttgtttatttgaaaca  19991700                                 <---------TOE2(3)                                 <---------TOE1(3)                                                  -                              --------->ARR14(2)                                                    <                              <---------ARR14(2)                   <---------HSFB2a(2)             <-                          <------ZmHOX2a(1)                        --------->HSFB2a(2)             --                      --------->TOE1(2)                         <-------PIF5                      <--                     --------->YAB1                             ------->PIF5                    -----                     --------->ATHB12                    <------ZmHOX2a(1)                      -----                    <---------YAB1----------->GT1--------->YAB1--------->ANAC46                 -----  <---------ZAT6  --------->YAB1 <---------YAB1 <---------YAB1------->TEIL                      -----   aatagtgtaacgcgagtctataatcataggaggttatggtaaaacgttgtatgatactaggatgcacgtcgagaggttttgagtttagaactcgtgccac  19991800        <------MYB46(1)        <------MYB83       --------->MYB55(2)       <---------MYB46(3)    <------MYB83    --------->MYB52(2)    --------->MYB55(2)    <---------MYB46(3)                                          <---------YAB1    <------MYB46(1)                                           <---------ICU4   <---------DEAR3(1)                                         -------->ATHB1   <---------AtMYB61                                          --------->ATHB12 ------->MYC2                                                 --------->ATHB51 <-------MYC2                                                <---------AHL20(2)                ------ <-------MYC3                                                --------->AHL20(2)               <------ ------->MYC3                                             <---------YAB1                      ------- -------->TGA1a                                          <---------AHL20(2)                   <------ ---------TGA1a                            <---------ANAC58  <---------YAB1                  <------ZmHOX2a(2) --------TOE2(2)                           <---------ANAC46  --------->ICU4          ----------->HVH21 ----->TEIL                                <---------ANAC58  --------->AHL20(1)      --------->ANAC58 -------ALFIN1                     --------->YAB1        --------->AHL20(2)          --------->ANAC58 ---->ANAC58                       -------->HAHB4       --------->AHL20(2)         <---------AtLEC2 ---->ANAC46                      <---------YAB1 --------->ANAC58              --------->At4g35610 ---->AtLEC2                      --------->ICU4 --------->ANAC58         --------->ANAC46   <------- ---->ANAC58                 ----------->GT1     --------->ANAC46       <-----------GT1     <--------   gcacgttggtgggtcgattatgaagtagggaatgtaataatagagtcgtggacgcaaattaaaattattagttttcacatcatcggcatgacacgatcat  19991900                                              <-----------HVH21                                            <---------YAB1                                         <---------YAB1--------->LBD16                                       <---------CCA1(1)                                       <---------RVE1(1) --->KAN4(2)                          --------->AHL20(1) ---KAN4(1)                           <---------AHL20(1)                                    <<<<<<<<< -->HSFB2a(1)      <---------AHL20(2) --------->ARR11(3)         ----------->GT1           <------MYB46(1) ---ICU4          --------->AHL20(1)  <---------ARR11(3)------>NtERF2                      <------MYB83 --YAB1           <---------AHL20(1)<---------TOE2(3)  ------>NtERF2            <---------AHL20(2) -ARR11(3) ----------->RAV1(1)  --------->CCA1(2)    <---------LBD16        <---------CCA1(2)   tccaacaatatgccaacatatatatttctaagagatttaagatattatggtcagtcccggcccaaactcgtaaaacctgtatatttttgaatttggtttg  19992000                                         <---------At4g35610                                       <-----------RAV1(2)                                      ------>ZmHOX2a(2)            <---------ANAC46      <---------YAB1            <---------ANAC58 <---------TOE2(3)                --------->ANAC58 <---------YAB1           <---------AHL20(2)                  --------->ANAC58               <------- <MYB80     <---------ANAC58---------->DOF2        --------->At4g35610                       --------   atcatgctcgattttcttggacttatattttaaagtatgatccagccgataacagctacaaggtaagcctgtattgtttcagtttttttttttttttaat  19992100                           --------->YAB1                        --------->YAB1                   <-------TEIL            <----------DOF2               <---------YAB1        <----------DOF2               <---------TOE1(3)  --------->ARR11(3)                 --------->TOE2(3)     --------->AHL20(2) --AHL20(2)    <---------TOE2(3)  <---------ARR11(3)                ----------->GT1---------->DOF2 ->AHL20(2)  <-----------GT1     <---------CCA1(2)                  --------->ANAC46   --------->ARR11(3)   taacaaaaactgtttttaagattcaacaatgatatatatcttttacttttaaaaatccacattagtctaaacgtaaatttgaatgtaaagaaattgaata  19992200  Previous    Next  AGI:  At5g49270.1    Description:  COBL9/MRH4/SHV2 (COBRA-LIKE 9, SHAVEN 2); carbohydrate binding. Identical to COBRA-like protein 9 precursor (COBL9) [Arabidopsis Thaliana] (GB:Q9FJ13); similar to COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR) [Arabidopsis thaliana] (TAIR:AT3G16860.1); similar to ATSEB1 [Arabidopsis thaliana] (TAIR:AT4G16120.1); similar to COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) [Arabidopsis thaliana] (TAIR:AT3G20580.1); similar to unknown [Populus trichocarpa] (GB:ABK94747.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44868.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40069.1); contains InterPro domain Carbohydrate-binding; (Inter Range:  from: 19989135    to: 19991670    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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