Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------ANAC58          <---------ANAC46          <---------ANAC58   --------->ANAC55(2)   <---------ANAC55(2)                                   <---------CCA1(2)   =====================RAV                             --------->AHL20(1)   ----------->RAV1(2)                                  <---------ARR11(3) <-----------GT1                                        <---------AHL20(1) ------HAHB4                              <---------ANAC58 ------>ATHB51       <---------MYB46(3)   <---------ANAC46<---------ARR11(3) ------>YAB1    <------MYB46(1)           <---------ANAC58--------->ARR11(3) -------ICU4    <------MYB83             <---------At4g35610 ----->ATHB1   <---------AtMYB61         <---------ZAT2 <---------AHL20(2) ------YAB1   <--------P          --------->MYB52(2)    --------->ARR11(3)                     ------ ----->ICU4 <-----------RAV1(1) <---------MYB52(1)   --------->AHL20(2)<-------TEIL          --------   ttattacctgttccttgttggtgttgttgtccctgttatttgcagcttgtgagattaatatatcttgtacaggttcatttcttcattcatgtgtaaccaa  19973300                                          <---------AHL20(2)                                      --------->AHL20(2)                                      <---------AHL20(2)                                  --------->AHL20(2)                                  <---------AHL20(2)                                 <---------AHL20(2)                                 <---------AHL20(1)                                 --------->AHL20(2)                                                 <                              <---------AHL20(2)                                              -------                             --------->AHL20(2)                                      --------->At4g35610                             <---------AHL20(2)                                   <---------At4g35610                          <---------RVE1(1)                                       --------->At4g35610                         --------->ARR11(3)                                  ---------->DOF2  =======                         --------->ARR14(2)                ---------->DOF2   ======================== ---->DOF2               <---------ARR11(3)          ----------->GT1      --------->YAB1 ----------->GT1 ->MYB46(3)              <---------ARR14(2)         <------NtERF2        <---------ATHB12<---------ANAC46   agaaattttgtattagcccagtaaccagatattaatttttttaaatatttgggcctcgttaaaaagcccagcccaataacaaagagctgcttcgtaaaaa  19973400      --------->ANAC58      <---------ANAC55(2)      --------->ANAC55(2)      --------->ANAC46      --------->ANAC58   --------->TGA2(2)  <-----------TGA1  <-----------HVH21 --------->bZIP60(2) --------->ANAC55(2) <---------ANAC55(2) <---------bZIP60(1) --------->TGA1a --------->bZIP60(1)                                                                           <----- --------->ANAC58                                                                       <---------AHL20(2) --------->ANAC58                                                                  --------->LBD16 --------->ANAC46                                                                 --------->ANAC58 --------->O2                                                                     ----------->GT1 --------->TGA2(1)                                                                --------->ANAC58 <---------TGA1a            --------->AtMYB61                  xxxxxxxxxxxxxxxx>smallRNA(s) <-------- <---------O2              --------->MYB46(3)              ------->GAMYB          --------->ANAC46 <---------TGA2(1)       ------>MYB46(1)                  --------->MYB46(3)  <---------ALFIN1 <----- -----------STF1         --------->ANAC46                 <---------ATHB12  <---------ALFIN1<-------- --->DOF2                ------>MYB83                    ------>MYB46(1) <-----------GT1--------->AHL20(2) ==========bZIP_DOF    <---------MYB59                   ------>MYB83    --------->ANAC46<---------ICU4 ==========bZIP_DOF    <---------MYB46(2)                -------->P  <----------DOF2   --------->ICU4   gagacgtcacgaaaccattcgcttaccaaaccacacagagacacatctcttcattttccaaccatcttcttcttttcgccacacccgtaaatatttactt  19973500                               <-----------GT1                              --------->AHL20(2)                          --------->AHL20(2)                              --------->ARR11(3)                          <---------AHL20(2)                              <---------AHL20(1)                          --------->AHL20(1)                            <---------AHL20(1)                          <---------AHL20(1)                            <---------AHL20(2)                         <---------AHL20(2)                             --------->AHL20(1)                         --------->AHL20(2)                          --------->AHL20(2)    <---------YAB1                        <---------YAB1                          --------->AHL20(2)         ------>ZmHOX2a(1)                     --------->ICU4                           --------->AHL20(2)        ------>MYB46(1)                     <---------YAB1                           <---------AHL20(2)        ------>MYB83 ----DAG2          <---------ICU4                           <---------YAB1--------->AHL20(1) ---GT1            --------->YAB1                         --------->ATHB51<---------ARR11(3)--------- -----DOF2        --------->ICU4                          --------->AHL20(2)    --------->YAB1 -AHL20(2)        <---------YAB1        <---------ANAC46  <---------AHL20(2)  <-----------GT1       -   tttctcactatgttcaacttattattattaaattaactaatttagtgtatgccactagaattatttttatataaaatatttttcatcaccttcctgatta  19973600       <---------AHL20(2)      --------->AHL20(1)      <---------AHL20(1)      <---------AHL20(2)      --------->AHL20(2)   --------->YAB1                       --------->LBD16                                     ------->TEIL   --------->AHL20(2)                   ------------>CBF                     <---------GLK1(2)    <--   <---------AHL20(2)           --------->REM1(1)                        ------>ZmHOX2a(1)<---------ZAT14 >ATHB12   --------->YAB1    --------->TOE2(3)                 *TSS     --------->TOE2(3) --------->ZAT14 -------->YAB1     <-----------GT1<---------At4g35610        <---------GLK1(2)          -------------   gataataatataatcaaaaattcacccatttccttcatcttccccaatctctctaaaaccctagaaactcacttcctcagtttctccaactctgtacttc  19973700                            <---------ATHB12                            --------->ICU4              --------->TOE2(3)                                                                    <-       <---------------------WRI1                                                                <---    ---------->DOF2    --------->ANAC58                    <---------LBD16    <----------DOF2    ---- --------->YAB1        --------->ANAC58                  <---------LBD16      <---------DAG2<-------- -------CCA1(2)   ---------->DOF2                    <---------AHL20(2)    <-----------GT1  --------- -->AtSPL8    --------->TOE1(3)                <----------DOF2   ---------->DOF2      <-----------GT1   gtatcatcaagcgaaaccctaaaagaagcaatctttagtctcttctcttctttattttttctggggagaaagaaatttcacttttttttatccgatttct  19973800                                                                                             --------                                                                                            ---------                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                                                        --------->ARR14(2)   --------->At4g35610                                           <------ZmHOX2a(1)      <---------ARR14(2)   <---------At4g35610                                      <---------HSFB2a(2)   --------->SPL7   ----------->RAV1(2)                                      --------->HSFB2a(2)   ---------->DOF2 --------->REM1(1)                                       <---------ARR14(2)       <-------TEIL ---------DOF2                                           --------->ARR14(2)    --------->ANAC58 ------At4g35610                                     <---------ANAC46          --------->ANAC58 ----->At4g35610                                     --------->ETT(1)         <---------TOE1(2)   --- -GLK1(1)                                    --------->ANAC58    ===============================HOX2a_HOX2a >GLK1(1)                <------ZmHOX2a(2)   --------->ANAC58    ================================HOX2a_HOX2a   gcttcatctgggttttggatttttgcgatcgattttgagaaattagcaaacaatgtcgggttctggaggagtttcaatcgcacgtacagcgatccgtggt  19973900                              <---------TOE2(2)                           <---------ANAC46                                           --------->ICU4 <---------ARR14(2)        <---------ANAC58                              --------->ANAC58 --------->GLK1(2)         <---------ANAC58                    <---------GLK1(2)      <---------YAB1 --------->ARR14(2)--------->DEAR3(1)                     ----------->RAV1(1)      --------->ICU4 ->ALFIN1          --------->AtMYB61                    --------->At4g35610      <---------ANAC46 >LBD16  --------->YAB1   <-------TEIL         ----------------->AGL2    --------->ANAC58 -------->ARR10 <---------ALFIN1<------ZmHOX2a(1)       <---------At4g35610   --------->bZIP60(2)<---   gagaatcggttttataatccacctccgatgcgtaggatgcagcaagaggcccaattgcagcaacagattagggagaagcaacgtcgtgatgatgaagatg  19974000                                                                          <------NtERF2                                                                      <-----------HVH21            <-                                                                     --------->ALFIN1              <-                                                                     ----------->HVH21             <-                                              <------ZmHOX2a(1)      <-----------RAV1(1)          <--                                           --------->HSFB2a(2)     <---------ANAC46         <-------GAMYB               ---------->DOF2             --------->LBD16         <---------ANAC58        <---------MYB46(3)            <---------TOE2(3)              <---------HSFB2a(2)     <---------ANAC58        --------->MYB55(2)      <---------WOX13(1)                  <---------TOE1(1) <---------ARR11(3)             --------->MYB111(2)     <-----------------AG    <---------At4g35610            --------->ARR11(3)        <---------ANAC46   <---------YAB1            --------->At4g35610        ---------->DOF2 --------->ETT(1)  <--------P ------TOE2(3)<------ZmHOX2a(1)   <-----------RAV1(1)  <------ZmHOX2a(1)<---------ANAC46 <---------MYB52(1)   aggttttgatggataaggaaaggagaaaggctgctactgttgctccgaggactactaggaaaggtcttggtgtgtcggagagtaagagtcgggttgttgt  19974100                                             <---------DEAR3(2)                                             <---------MYB46(3)                                          <---------ARR14(2)                                          --------->ARR14(2)                                        --------->LBD16                                       <---------ANAC58                             <---------GLK1(2)   <---------ANAC46                           ---------                           <---------YAB1 <-----------HVH21                        <---------MYB46(3)                         <---------At4g35610--------->ETT(1)                      <---------ARR14(2)    <-------TEIL     <---------ARR14(2)--------->HSFB2a(2)                        --------->ARR14(2) --------ANAC58      --------->ARR14(2)<---------ANAC58                        ------>ZmHOX2a(2) --------ANAC58     <---------MYB52(1) <---------ANAC46      --------->ATHB12  ====================== --------ANAC46    <---------DEAR3(2) <---------LBD16       <---------ZAT6   <---------ARR14(2) -------LBD16    <---------LBD16  <<<<<<<<<TBF1<-----------HVH21             --------->ARR14(2)   ttcgggttcggaagtatgtgccggttcttctgattcttcttccgggtcgggtcgggttcttagtgatgggtctaacttggatcggttcttggagcatact  19974200  Previous    Next  AGI:  At5g49215.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G06770.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44838.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 19970713    to: 19973342    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g49220.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44865.1); contains InterPro domain Protein of unknown function DUF789 (InterPro:IPR008507) Range:  from: 19973663    to: 19976059    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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