Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->HSFB2a(1)                                                                                        --------->HSFC1(2)                                                                                        <---------HSFC1(2)                                                                                        <---------HSFB2a(1)                                                                                   --------->ANAC58                                                                                   --------->ANAC46                                                                             --------->At4g35610                                                                             <---------ZAT2  <-------       <---------YAB1                                           ------>NtERF2--------->ZAT2  <------- -------->RAV1(2)                                            --------->ZAT2  <---------At4g35610 ------>At4g35610        --------->ANAC58       <---------ARR14(2)<---------ANAC58 --------->ANAC58 -ZmHOX2a(2)             --------->ANAC46       --------->ARR14(2)<---------ANAC58--------->LBD16 -->ARR11(3)             --------->ANAC58 <----------DOF2    --------->At4g35610  <---------LBD16 ---ARR11(3)      <---------GLK1(2)       <---------MYB52(1) <---------At4g35610 <---------ALFIN1 --At4g35610--------->YAB1        ---------->DOF2      <---------YAB1    <-----------HVH21<----------DOF2   atctgtagcatcattcataagcttctcacacaactccaaagcccctttggtatccttgtcattagctgccttggctgtcagctccacggaagctttcttg  19959800                                                                           --------->HSFC1(2)                                                                          --------->GLK1(2)                             ---------->DOF2                          <------ZmHOX2a(1)                         <---------bZIP60(2)                    <---------ZAT6  --------->YAB1                         <---------ANAC46       <------ZmHOX2a(2)    --------->At4g35610                       <---------TGA2(2)        =============================HOX2a_HOX2a                      ----------->HVH21        --------->ARR11(3)  <-----------RAV1(2) --ANAC58             ----------->TGA1--------->TOE2(3)     --------->REM1(2)<----------DOF2 --ANAC58      ------>ZmHOX2a(2)      --------->YAB1       <---------ANAC46<---------HSFC1(2)   atgctatcttctatggatcgaatggtgacgttgaagccaagcttaatgagatcaagaggctgagtagagtcaggagaagctttcatgagactattgacac  19959900                                               <------NtERF2                                             <---------RAP2.6(2)                                           <---------MYB46(3)                    <-------TEIL          <---------AtMYB61                    <---------ZAT18       --------->ALFIN1                    --------->ZAT18     <---------bZIP60(2)                 <------MYB46(1)        <---------ANAC58                 <------MYB83           <---------ANAC46                --------->MYB111(1)     <---------ANAC58                --------->MYB46(2)   ------->GAMYB                <---------MYB46(3)  --------->MYB46(3)               <---------MYB55(1)  <---------At4g35610      --------->ZAT14         --------->ATHB12            <---------ICU4       --------->REM1(1)          <---------ZAT14       <---------WOX13(1)           --------->ICU4      <----------DOF2<---------MYB46(3)               <---------YAB1  <-----    <----------DOF2 --------->ZAT14--------->At4g35610      --------->ZAT18 <-----------GT1    <-----   aagtctctttgtaatcagtaggtgcacaaactgcttcaactgccgtggtggctgttttaatctgcacagggacgattttttctgaatgactggtgtttct  19960000                                                                                                <----                                                                                             ------->GAMYB                                                                   <---------ARR14(2)       ---------                                                                   --------->ARR14(2)      -------->P                                                            --------->YAB1               --------->AtMYB61                        --------->YAB1                --------->ANAC58            --------->ZAT14                    --------->MYB46(3)                --------->ANAC58            <---------ZAT14               ------->GAMYB                 --------->YAB1<---------ATHB12       <---------ZAT18        <---------bZIP60(1)               ----------->GT1  --------->ICU4       --------->At4g35610 ----ANAC58   --------->MYB46(3)  --------->ANAC58    --------->ANAC46   <----------DOF2 --------->MYB46(3) ----ANAC58 ----------->RAV1(1)   --------->ANAC58 ------->GAMYB ------->TEIL   <---------At4g35610 <   tgatgttgtgatgccaacagcgacaaccatgagaacgagcaaggctgtgataaccccagcaatgatgcatttcttctttttcagttcaccatcaaccccc  19960100              >>>>>>>>>GATA-1              <---------ARR14(2)              >>>>>>>>>GATA-2                                                                    <---              >>>>>>>>>GATA-4                                                                  ------         <---------ANAC46                                                                     -------        <---------MYB46(3)                                                                    -------        <-----------RAV1(1)                                                                   <------ -----ALFIN1  >>>>>>>>>GATA-3         ---------->DOF2                                         <------ >MYB46(3)    --------->ARR14(2) ---------->DOF2                                              ------- ---------AHL20(2)          <----------ID1                                           <---------MYB46(3)   atttttttgtctggtggattcagtttcaagagaacaaaagaaaagaatttagttggaagggcttaagagccccttgtgactctgttttggttagaagata  19960200           <---------ZAT14           <---------ZAT18                                                                          < ------YAB1--------->ZAT18                                                                          < --->CCA1(2)                     *TSS ---------->DOF2                                               - -->ARR11(3)              <---------AHL20(2)               <---------TOE2(3)                        - -->ARR14(2)             <---------AHL20(1)               <-----------TBP             --------->ANAC46 ---ARR14(2)             --------->AHL20(1)           <------ZmHOX2a(1)           --------->YAB1    < ---ARR11(3)             --------->AHL20(2)     <---------ZAT6              --------->At5g28300<----- -->ARR11(1)             <---------AHL20(2)   <------------CBF             ----------->GT1  <--------   tgagagagaagagtggacttaacaaaatataatgaagaaacaaagtgctattgttaggatttatgtagaacatgaggctgtgaattataaggcatcatgt  19960300                                                                                     <---------------AGL15                                                                                     --------------->AGL15                                                                             <----------DOF2                                                                       <------MYB46(1)                                                                       <------MYB83 -----------------                                              <---------At4g35610     --------->MYB111(1)                                              --------->At4g35610     --------->MYB46(2) ---------GLK1(2)                           <-----------GT1           <---------MYB46(3)         <--- ---------ARR11(3)                    <---------TOE2(3)               <---------DEAR3(1)       <----- -------->ARR14(2)                    <---------TOE1(3)               <---------AtMYB61     --------- -------->ARR11(3)                  <<<<<<<<<WRKY18                   --------->MYB111(2)   --------- ---------ARR14(2)                 --------->WRKY18(1)            <---------TOE2(3) ----------------- ------HVH21                     --------->ANAC58           --------->AHL20(2)      <---------------- -ICU4     <---------YAB1        --------->ANAC58   ----------->HVH21<--------P   --------->ZAT6 ----   cagattttctgtcattagagttttgttttcccaacaagtcaaggttttagctctctgaccaatataacaaggttggtgtctttacctctaaaaatagtaa  19960400                               <---------AHL20(2)                    ------>MYB83                    -------->P --------->AHL20(2)                    ------>MYB46(1)                   --------->MYB55(1)         ------>ZmHOX2a(2)    <---------AHL20(2)        <------ZmHOX2a(2)     --------->AHL20(2) <---------ZAT6   <---------MYB111(2) >AGL3 --------->AGP1<---------ATHB12 ------YAB1       <---------MYB46(2) ------GT1        --------->MYB46(3) >YAB1 <---------AGP1--------->MYB46(3)                                         <-------------------- -->GT1--------->ARR11(3)     --------->AHL20(1)                    --------->TOE2(3) >AGL2 <---------ARR11(3)     <---------AHL20(1)                    --------->TOE1(3) -AGL3<---------CCA1(2)----------->GT1                           ----------->RAV1(1) ----->ICU4       <---------MYB111(1)<---------YAB1    --------->MYB46(3)--------->ZAT6        ------   ctattgttagatcttagataccaaccagtaaatttatttgttattgatattaagagaacagccaaaacaacattaacacaaataagtccaaaatcaaacc  19960500                                                              --------->ZAT14                                                              --------->ZAT18                                                              <---------ZAT14                                                         ---------->DOF2                                                     ---------->DOF2                                                    XXXXXXXXXXXXXXXXXXXX>MIR825                                                   ------>ZmHOX2a(2)           ------>MYB46(1)                                                  =======================HOX2a_HOX2a                                                  ===================================HOX2a_HOX2a                                                  <------ZmHOX2a(2)            ------>MYB83                                                  --------->CCA1(2)            -------->P                                                 <---------ARR11(3)    --------->AHL20(2)                                                 --------->ARR11(3)    <---------AHL20(2)                                                 <---------AGP1   <------ZmHOX2a(1)     --------->ICU4                        <---------YAB1           --------->AGP1  --------->ANAC58       <---------YAB1                ----------->RAV1(1)             --------->RVE1(1)--------->ANAC58     --------->YAB1                ------>MYB46(1)              ---------->DOF2 --------->ALFIN1 ------>ZmHOX2a(1) ---TaNAC69(2)  ------>MYB83         --------->ZAT6==================================HOX2a_HOX2a --->MYB46(3)--------->ANAC46    <---------ARR11(3)======================HOX2a_HOX2a<-----------HVH21   actgaaggaaacaaaacccaacaatttttattcaagataacacaaacaaaagatctaaagaaagtgcaggaaataaaatcctaccctgtcatgatcagtt  19960600           <---------At4g35610           --------->At4g35610           <------NtERF2          ------>NtERF2                                                                             -         <---------ATERF1(2)                                                              -----------         --------->ATERF1(2)                                                              <------MYB46(1)    --------->At4g35610                                             --------->ETT(2)      <------MYB83   <-----------RAV1(1)                   ---------->DOF2  --------->DAG2        --------->YAB1 ------   <---------MYB46(3)     <---------ANAC58               ---------->DOF2    ---------->DOF2<-------GAMYB ----------->RAV1(2)      <---------ANAC58       <---------TOE2(3)  <---------ETT(2)     <---------MYB46(3) <---------At4g35610      <---------ANAC46   --------->YAB1      <---------REM1(1) --------->MYB52(1)   ctcatctgttgccagcgggattgaattggcctgcaaaccgaagaaaagaataatgtaagtaaagtagatgtagacatcaaaagaataacagtgggttaca  19960700  Previous    Next  AGI:  At5g49180.1    Description:  pectinesterase family protein. similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G06830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44818.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectinesterase, catalytic; (InterPro:IPR000070); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) Range:  from: 19957904    to: 19960233    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g49190.1    Description:  SUS2 (SUCROSE SYNTHASE 2); UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups. Identical to Sucrose synthase 2 [Arabidopsis Thaliana] (GB:Q00917;GB:Q9FJ20); similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TAIR:AT5G20830.2); similar to SUS4, UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G43190.1); similar to SUS3, UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G02280.1); similar to unnamed protein product [Vitis vin Range:  from: 19960508    to: 19964415    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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