Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     --------->HSFB2a(2)                                                                   <---------HSFB2a(2)                                                                   <---------HSFC1(1)     --------->MYB59                                        --------->KAN4(1)          --------->HSFC1(1)     -----------                            <------ZmHOX2a(2)                 ---------->ID1              --------->MYB52(2)                           <---------ARR11(3)               <-----------RAV1(1)        ------------>MYB.PH3(2)                           --------->ARR11(3)        <---------ANAC46                 --------->MYB111(1)                         --------->ICU4<---------YAB1<---------ANAC58         <---------ZAT14   <----                  <---------ANAC58    <---------GLK1(2)  <----------DOF2      --------->ZAT14<-------                  <---------ANAC58  --------->ICU4   <---------ANAC58  <---------GLK1(1)<---------MYB52(1)   ttccttcttcatttttgttttcttgtcaagatcaaacaaagattattcagttatagcgtcttttgttgtctagaaatcactgaactagtagttagttatt  19883100                                             --------->ARR14(2)                                             <---------ARR11(3)                                             --------->ARR11(3)                                             <---------ARR14(2)                                             <-----------ARR10                                  --------->ANAC58                                  --------->ANAC58          --------->HSFB2a(2)  <-----------HVH21             <-----------RAV1(2)  <-----------GT1 >GT1 <---------LBD16        ----------->HVH21  <----------DOF2 -------GT1              --------->ATHB12    --------->GLK1(2)                 ------->TEIL --ICU4            --------->MYB46(3)       <---------GLK1(2)                  <-------TEIL   acaccttcaccggttgaaacaacaacttgatgggacagggaagtgagaatcttttttgccttctcggtcttagaaagaatgtacatttgcgatgagagta  19883200                <----------ID1             ---------->DOF2         <---------AHL20(2)  --------->DAG2                                       <---------MYB46(3)         --------->AHL20(2) ---------->DOF2                                     <---------ANAC58        --------->AHL20(2)<------ZmHOX2a(1)             <---------ANAC58        <---------ANAC46   --------->ANAC58      <----------ID1                 <---------ANAC58        <---------ANAC58   --------->ANAC58 ---------->DOF2   --------->ARR11(3)<---------ANAC46<-----------HVH21   agagcaagaatttaaaaaagaacaaagaggaaaagccgaagaaattgacattgtttttgcttataaacatttgcagtcacttgcttgttgattaagttga  19883300                                               --------->YAB1                                              <---------ATHB51                 --------->YAB1               <---------ATHB12 <---------TOE1(3)                   --         <---------WOX13(1)      --------->ARR11(3)    <----------CDC5                             --   ----------->GT1               <---------ARR11(3) <---------ZAT18              --------->YAB1    --  <---------TOE2(3)        --------->YAB1     --------->ICU4   <---------TOE2(3)<---------YAB1   ----  <---------TOE1(3) --------->YAB1--------->CCA1(2) --------->ZAT18<----------DOF2       ----------->GT1   ttttgaggttaattgacaactataacaaatcagaagatttaagttgcaattatgtgcgctaagctaaggcttttagactcttatcatcatgtagtaacat  19883400                           --------->HSFC1(2)                           <---------HSFC1(2)                  --------->AHL20(2)                  ----------->TBP                           --------->At4g35610          <-----------GT1                --------------->AGL15                      --------->ARR11(3)           --------->AHL20(2)                <---------------AGL15                      <---------ARR11(3)       --------->AHL20(2)                <----------DOF2  ===================================HOX2a_HOX2a    <---------AHL20(2)        ------------>CBF <---------GLK1(2)                --------->YAB1     --------->AHL20(2) ------->ANAC58----------------->AGL3         <------------CBF      <-------TEIL   --------->AHL20(2) ------->ANAC46<-----------------AGL3  <----------ID1    <---------ATHB12  <---------AHL20(2) ------->ANAC58--------->TOE2(3) --------->LBD16         *TSS------>ZmHOX2a(2)<---------AHL20(2) ------>DOF2 <---------ARR11(3)  ------>ZmHOX2a(1)   ------------>CBF     --------->AHL20(2)        -   caagccaagtgccaatacctttatatagatacttcctgaatacaacaaaattggacacaatgatctgagtttcatattatataatataaattaactaaac  19883500                                              --------->TOE2(3)                                              --------->TOE1(3)                                             --------->ZAT6                             --------->LBD16                                           <-----------GT1                             ------------>AtMYB77                                      --------->AHL20(1)                               --------->ANAC46                                      --------->AHL20(2)                              <---------LBD16                                      <---------AHL20(2)                        <------NtERF2  <-----           <---------ALFIN1          --------->AHL20(2)                        ------>NtERF2   <-----         ------->GAMYB            --------->AHL20(2)                <----------DOF2 --------->ARR14(2)         --------->AtMYB61       --------->AHL20(2)                <---------DAG2  <---------ALFIN1        --------->MYB46(3)       <---------AHL20(2)        <<<<<<<<<TBF1      <----------ID1   ------ -------->GLK1(1)    ---------->DOF2 <---------AHL20(2)------>ZmHOX2a(1)     ---------->ID1   <------   cgatttctcaaccacacatttgctaaaggctcaatataaattaattaaccctaaatccttcttcttcgaccttttatttggcgccaaacccgcagttaca  19883600                                          ---------->DOF2                                       -----                                  --------->LBD16                                               <----        >>>>>>>>>>E2Fb          ------>ZmHOX2a(2)                    --------->TOE2(3)      <------NtERF2       <-----------GT1        --------->ARR14(2)                   <-------TEIL           <---------ANAC58 ----ANAC55(1)                <---------ARR14(2)                  --------->GLK1(2)------>ZmHOX2a(2) ----ANAC55(2)             ------>ZmHOX2a(2)                      --------->ARR14(1)      <---------ANAC46 --->ANAC55(2)            <---------At4g35610                    <---------GLK1(2) ================== -TEIL<-----------GT1    <---------AGP1<----------DOF2 ---------->DOF2<---------MYB52(1)  <---------ANAC58   tgtttttatttcccgctcgagcaaattgatctgatccgagtctttcaagcggggagagaaagagagagattcgttagtacattgatctaatggcgtcgaa  19883700                                                                                                  ---                                                                                                -----                                                                                                -----                                                                                           --------->ATERF1(1)                                                                                           --------->RAP2.3(1)                                                                                           <---------LBD16                                                                                           <------NtERF2                                                                                          <---------ATERF1(1)                                                                                          <---------RAP2.6(1)                                                                                          <---------RRTF1(1)                                                                                          <---------RAP2.3(1)                                                                                          <---------ERF1                                                                                          ------>NtERF2                                                                                        <------NtERF2                                                                                        <---------ABI4(2)                                                                                        --------->ATERF1(1)                                                                                        --------->ERF1                                                                                        --------->ORA47(2)                                                                                        --------->RAP2.3(1)                                                                                        --------->DEAR4(2)                                                                                        --------->RAP2.6(1)                                                                                       <---------RAP2.6(1)                                                                                       ------>NtERF2                                                                                       <---------DEAR4(2)                                                                                       <---------RAP2.3(1)                                                                                       <---------RRTF1(1)                                                                                       <---------ERF1                                                                                       <---------ATERF1(1)                                                                                      <---------RAP2.6(2)                                                                                      <---------DEAR3(1)                                                                                      <---------RRTF1(3)                                                                                  ---------->DOF2<---                                                                            --------->MYB52(1) ------                                                                         <---------ANAC55(2)  <------NtERF2                                                                         <---------ANAC58--------->DEAR3(1)                                               --------->SPL7            <---------ANAC58--------->RAP2.3(2)                        --------->ANAC55(2)  ----------->HVH21           <---------bZIP60(1) --------                        --------->ANAC58    --------->TOE2(1)            <---------ANAC46<---------DEAR3(1)                        <---------ANAC55(2) --------->TOE1(1)            --------->ANAC55(2)<--------                        --------->ANAC46   <---------At4g35610          <------NtERF2 <---------RRTF1(2)                        --------->ANAC58   --------->At4g35610        <------NtERF2--------->DAG2<---                   <------NtERF2       <---------DDF1                 --------->ALFIN1<---------DREB2C(2)                <---------LBD16       --------->ETT(2)                <---------DEAR3(1)--------->RRTF1(1)            --------->ARR14(2)        >>>>>>>>>>bZIP19              <---------ANAC58  <---------RAP2.3(3)            <---------ARR14(2)        <<<<<<<<<<bZIP19              <---------ANAC46  <---------RAP2.3(2)           <------ZmHOX2a(1)          >>>>>>>>>>bZIP23              <---------ANAC58  --------->ALFIN1 ---->ARR14(2)<---------DEAR3(1)      <<<<<<<<<<bZIP23              <---------bZIP60(2)<---------ORA47(2) -----ARR14(2)------>ZmHOX2a(2)       <---------ETT(2)              --------->ALFIN1 --------->ATERF1(1) =================HOX2a_HOX2a        --------->DDF1   <---------At4g35610--------->bZIP60(1)---------   ttcggaagcgggaggatcggcggattacgaaacattgatgtcgacatcggacgttgagctattgaagagggcgtggcgtaacgagaaggcggcgccggag  19883800       --------->SPL7 ------>GLK1(2)              <----------ID1 ---->GLK1(1)              ---------->DOF2 ---->HSFB2a(1)        --------->ETT(2)                                             <---------MYB52(1) ------ARR14(2)        <---------ETT(2)                                            <-------GAMYB ----->ARR10    --------->ARR11(3)                   ----------->GT1              <-----------RAV1(1) ->LBD16       --------->GLK1(1)                    <---------ZAT6          <---------ATHB51      --- -ANAC46     <------ZmHOX2a(1)             <------ZmHOX2a(2)                <---------AHL20(2)   <--- ------GLK1(2) <---------GLK1(1) ---------->DOF2 --------->ATHB12     --------->TOE2(3)          ---- >DEAR3(1)   =====================================HOX2a_HOX2a         --------->TOE1(3)         <----   attcttcagtacgaaggagctcttgtcgatagagccaaagaacagatcgaattagtggtaaaatgtctaaaaccctaaattattctgttggattttttcc  19883900                        <----------DOF2       --------->MYB46(3)  <---------AtMYB61     <-----------GT1 <---------ARR11(3) ------>LBD16        --------->ARR11(3) ------HSFB2a(2)    --------->GLK1(1) ----->HSFB2a(2)    <---------GLK1(1)                                                          ------ -----LBD16     --------->YAB1        ------>ZmHOX2a(2)                         <---------ANAC46  ---   cagaaattaaccactaaatcagaaatcttttggtctatgatccaaattagactttccaattgttagaatagtattcgtttttgtgtgaaatcgaatgcca  19884000  Previous    Next  AGI:  At5g49010.1    Description:  SLD5. similar to unnamed protein product [Vitis vinifera] (GB:CAO44929.1); contains InterPro domain GINS complex, Sld5 component (InterPro:IPR008591) Range:  from: 19883457    to: 19885591    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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