Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------ARR14(2)              --------->ARR14(2)       <---------ANAC58       <---------ANAC46       <---------ANAC58   ------>ZmHOX2a(2)  <------ZmHOX2a(2) --------->GLK1(2) --------->ARR11(3)                                                           --------->YAB1 --------->ARR14(3)                                                           --------->AHL20(2) <-----------ARR10              --------->ANAC58                              <---------AHL20(2) <---------ARR14(3)             --------->ANAC46                       <-----------GT1 --------->ARR14(2)         <-----------HVH21                        <---------YAB1 <---------ARR11(3)   --------->ZAT18                              <--------HAHB4 <---------AGP1       <---------ZAT18       <----------DOF2        --------->YAB1 <---------ARR14(2)  --------->ALFIN1   <----------DOF2           <---------YAB1  <-----------GT1 ------ZmHOX2a(1)<---------ANAC55(2)  <---------DAG2         --------->ZAT6  <---------ATHB12     <-- -------TOE2(3) <---------LBD16 --------->ANAC58            XXXXXXXXXXXXXXXXXXXX>MIR406         <----   gaggatcttgtgtgaaaatacgggtggacttgtcaagccactctttcttttcttctcaatcgaacactattattatccaattatatactctctatttttt  19881300                                      <---------AHL20(2)                                      --------->AHL20(1)                                      --------->AHL20(2)                                     --------->AHL20(2)                                     <---------AHL20(2) -------YAB1                  ----------->GT1          ---------->DOF2--------->ICU4 -------GT1           <---------MYB52(1)      --------->YAB1          <---------YAB1             ----   atgattcaattcaagttagattccattatgcacagaaaattaaattgatcatatgtccaaagctctactgtcatttttgaattttgttgaaattttgaag  19881400                                                                  --------->ANAC55(2)                                                                  <---------ANAC55(1)                                                                  <---------ANAC58                                                                  <---------ANAC58                                                                  --------->ANAC46                                                                  <---------ANAC55(2)                   <---------WRKY18(1)                           <-------TEIL                  --------->WRKY38(1)                          --------->TOE1(2)          <---------ANAC58       ------->TEIL          <---------MYB46(3)          <---------ANAC58 <---------YAB1           <-----------RAV1(1)--------->ICU4 <------ZmHOX2a(1) ------->GT1      --------->WRKY12          <----------DOF2    --------->TOE2(2)<-------TEIL     ----   ggttaacttattttgtgccattgaccactatgatgcatttgaaagactttttttttgttgttgaacatacgtgattactagcttcataggaagaaataag  19881500                       ------->TEIL                 ----------->HVH21             <---------AHL20(2)            <---------AHL20(1)           <---------AHL20(2)                --------->ICU4 --------->HSFB2a(2)         --------->AHL20(2)             ----------->GT1     <---------HSFB2a(2)        <---------AHL20(1)             <---------ZAT6     <---------REM1(1)                       <--        --------->AHL20(1)        ------>ZmHOX2a(1)       ----------->GT1                     <------       --------->AHL20(2)       <-----------------AGL1    <---------ANAC46                    <------ ------->GT1--------->AHL20(1)  ----------------->AGL1 <-----------RAV1(1)                <----------DOF2   tgtaacaaaatatatatatttgacgaatttttggtcctctactggtaattttgagttgtgttgtagaaatttgtggtgactcaaaactattgttttaagg  19881600                                                              --------->AHL20(2)                                                              <---------AHL20(2)                                                             --------->AHL20(2)        <-------TEIL                                         <---------AHL20(2)    <---------TOE2(3)                              ------------>CBF                           <------    <---------YAB1                             <---------TOE2(3)                          <---------TOE2(3) -----TEIL                       <---------HSFB2a(2)   --------->AtLEC2             --------->ZAT18-- ---TOE2(3)        --------->AHL20(2)          <---------YAB1<---------AHL20(1)   --------->PCF2  <-- ---TOE1(3)       <---------ATHB12  ---------->DOF2<-------TEIL               ---------->DOF2 -------   ctcattaagattcaatacaaatgaattagataattctataaggcccattaagattcaatgcaaattatttagataatttctaaaggcccactaagattca  19881700                                                                                             <-------                                                                                             <-------   --------->ARR11(3)                                                                      --------->MYB46(3)   --------->ARR14(2)                                                                <---------ANAC46   <---------ARR14(2)                                                                <---------ANAC58   --------->GLK1(2)                                                             <-----------HVH21 --   <---------ARR11(3)                                <---------ANAC58        --------->MYB52(1)  ---- -TEIL                                               <---------ANAC58       <---------ARR14(2)   <--- ------->YAB1             --------->At4g35610>>>>>>>>>>>>>>>>>LFY       <------ZmHOX2a(1)  --------->DEAR3(2) -------ATHB12         --------->At4g35610  --------->ANAC58      <------ZmHOX2a(1)  <---------ANAC58 ----->CBF     <------NtERF2           *TSS --------->ANAC58--------->LBD16 --------->ARR14(2)-------   atgaaaatctgcaagtcggagtagaagcagaagaaatcgactaatctcgccaatgtcgtctccagagaggaagaggaagaaacggtcgcttgaaccgtca  19881800                              --------->ATHB12                  <---------MYB52(1)                 <-----------TGA1                 <-----------HVH21   --------->DEAR3(2)     --------->LBD16   ----------------------->TaNAC69(2) --------->ARR14(2)      --------->HSFB2a(2) <---------ARR14(2)      <---------HSFB2a(2) ----HVH21      --------->ANAC58 ----TGA1       --------->ANAC55(1)                                        <---------MYB59 ------->LBD16  --------->ANAC46             <-----------ARR10            --------->ANAC46 ----->At4g35610--------->bZIP60(2) >>>>>>>>>ARR2                    <-----------GT1   <---------MYB52(1) ------LBD16    --------->ANAC58  <---------YAB1                  <---------------AtSPL8           <- ---->HVH21 <---------ALFIN1 <---------ATHB12--------->GLK1(2)    --------------->AtSPL8 --------->MYB52(2)   ccggaatcgaccccaaacccgtcacttcccgatgatttgattgtgagcatcttagcccgagtctctagattgtactacccaattctctcgttagtctcca  19881900                                                           --------->SPL7                          <------NtERF2                   ------>MYB46(1)               <---------MYB52(1)                         --------->MYB52(1)         <---------HSFC1(2)                               ------>MYB83         --------->HSFC1(2)                              <---------SPL7                          ----         <---------HSFB2a(1)                  <----------DOF2                                    ----         --------->HSFB2a(1)        --------->ANAC46    ------->GAMYB                   <---------GLK1(1)    --------->HSFB2a(2)  --------->LBD16     ------>ZmHOX2a(2)                          --------->GLK1(1)    <---------HSFB2a(2) --------->DEAR3(1) --------->ARR11(3)                        ----------->ARR10 --------ARR11(3)      <---------LBD16     <---------ARR11(3)                  ------->TEIL    ------   agagctctcgaaccctcgttacttcgccggagctatacaagactcgatctttcttcaaccgaacggagagttgtctctatgtatgcttagatttccctcc  19882000             <---------TOE2(2)            <---------MYB52(1)           ------->MYC3           <-------MYC3          <---------O2          <---------TGA1a          --------->O2--------->ANAC46          --------->TGA1a        <---------ALFIN1       =============MYC_MYB                                         ---------->DOF2       --------->TOE2(2)               --------->MYB46(3)       <---------ARR11(3)       ------->GAMYB--------->ZAT6   ------>MYB83               --------->ARR11(3)     >>>>>>>>>MYB98 <-----------GT1  --------->MYB52(1)     ---------->DOF2 -->ZmHOX2a(1)<------MYB46(1)        ------>MYB46(1)    <----------ID1 ------->HVH21<------MYB83         <---------MYB59  --------->HSFB2a(2)                             < ----->RAV1(2)<---------MYB46(3)   --------->AtMYB61<---------HSFB2a(2)                  <---------ALFIN1   tgaccctaacccacgttggtttacactctaccgaaaacctaaccaaaacatcaccgagaagacaaagaactcaagcgggtttgttttagccccaatccca  19882100                                                                   <---------TOE2(3)                                                                  --------->YAB1                                                             <-------TEIL ------->TEIL                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                           --------->ARR14(2)                                                           <---------ARR14(2)       ---------->DOF2                                  <---------ANAC46       <---------MYB46(3)         =================  <---------YAB1             <----------DOF2          <---------MYB46(3)<---------ZAT18 -----------GT1      <---------ARR14(2)              <---------AtMYB61  --------->ZAT18   aatcaccattcacatagttcgagtatcgttgctattgggtctaacatctatgccattggtggatccattgagaatgcaccctcttctaaagtctcaattt  19882200  Previous    Next  AGI:  At5g49000.1    Description:  Identical to F-box/Kelch-repeat protein At5g49000 [Arabidopsis Thaliana] (GB:Q9FI70;GB:Q8GY04); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39550.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 19881739    to: 19882981    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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