Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------At4g35610          --------->At4g35610   <---------ICU4   --------->ATHB12  --------->ICU4  <---------YAB1                                                                   <-----------HVH21  <---------ATHB12                                                               ------->MYC3 <---------TOE2(3)                                ----------->GT1                <-------MYC3 -------->YAB1                                    <------MYB83                  <---------O2 --------AHL20(2)                          --------->YAB1                       --------->O2 -------AHL20(2)                    <---------YAB1<------MYB46(1)     <---------ALFIN1 ---AHL20(2)               ----------->GT1<---------YAB1            ----------->RAV1(1)          ----   tttaatgattttagctaaaacattttcttatgtaaaatatgattttcatagttggtaactcaagtgtttgcaacacatcgacatgtgtcaaatctaattt  19877500                                                                          ----------->GT1                      ----------->GT1                  <-------TEIL      --------->DAG2     ---------       <---------AHL20(2)        <-----------GT1----------->GT1         ---------->DOF2  --------->YAB1 ------->GT1     --------->AHL20(2)--------->ZAT6--------->YAB1 --------->YAB1    <-----------GT1   tgttaatatttaaaacaaaaaatatagaaaatttttaaccctatggaagaatgaaaatacatacaaaaatcacaaaaagttatatttctattcataaatt  19877600                                                                                                  ---                                                                                             --------                                                                                             --------                                                                                          <--------HAHB4                                                                                          --------->ATHB51                                                                                          <---------ICU4                                                                                          --------->YAB1                                                                                         --------->ICU4                                                                                       --------->YAB1           --------->CCA1(2)                                       <---------------AGL15 --------->AHL20(2)        <---------TOE2(3)                                          <---------YAB1 <---------REM1(1) --------->ANAC55(2)              <-----------GT1              <----------DOF2--------->DAG2 <------- >AHL20(2)--------->ARR11(3)   ----------->GT1           <----------DOF2     ---------->DOF2 <-------   tttaagtaataagatttagaataagttaatgggatgtaacattgctaagagttagaatactttctctttatttttggggtaaagttgtagaataattaat  19877700                                                               <---------AHL20(2)                  --                                                               --------->AHL20(2)                  <-                                                   <---------ICU4                                  <-                                                   --------->AHL20(2)                              --                                                   <---------AHL20(2)                           <----          --------->DAG2                           --------->ATHB51                             <----         ---------->DOF2        --------->DAG2    --------->ICU4<---------AHL20(2)              ----- -------->GT1                  ---------->DOF2 <---------AHL20(2)                               ----- ->AHL20(1)          --------->AHL20(2)        --------->AHL20(2)                              ------ ->AHL20(2)          <---------AHL20(2)        <---------AHL20(1)    <---------AHL20(2)        ------ --AHL20(2)      <---------AHL20(2)            --------->AHL20(1)   <---------AHL20(2)  <---------REM1(1) --AHL20(1)      --------->AHL20(2) <---------REM1(1)  <-----------GT1   <---------AHL20(2)  --------   tagttacaaaaaaaagtttttaattttttgaagtaaagttgtagactaattaattatttacaaaattttttttattttttttggagtaagttgtagaata  19877800                                                          --------->At4g35610 ------->AHL20(2)                                   --------->AHL20(1) --------AHL20(1)                                   <---------AHL20(2) --------AHL20(2)                                --------->YAB1 ------->AHL20(1)                                --------->ATHB51 ----HAHB4                                       <---------ICU4 -----ICU4                                       <--------HAHB4 ---->YAB1                           --------->DAG2 <---------AHL20(1)                --------->AHL20(2) ---->ATHB51              <---------------AGL15 --------->AHL20(2)                  --------->ICU4 --->ICU4              --------->AHL20(2)       --------->ICU4     <---------ARR11(3)<---------ICU4 --->AHL20(2)          <---------AHL20(2)<---------MYB46(3)    ---------->DOF2 ----------->GT1 ->YAB1      --------->YAB1         ---------->DOF2 --------->AHL20(2)      <---------MYB52(1)   ----   attaattagtcacaaaaataagtttttaatttttggagtaaagttgttgaataattaattagctaaaaagatagtatcgttttgtaatttttatatttat  19877900                                                                                                  ---                                                                                                  ---                                                                                  ------>NtERF2  <---                                                      --------->GLK1(1)           <-----------HVH21                                                      <---------GLK1(1)          <---------ANAC46<---                                                     <---------GLK1(2)          --------->RAP2.3(1)                                  *TSS               <---------ARR14(2)        ------>NtERF2     ----                                <---------WOX13(1)   --------->ARR14(2)        --------->LBD16  -----                               <------------CBF     <------NtERF2            <---------LBD16    -----                              --------->ATHB12    <---------ANAC58      --------->DEAR3(1)<---------RAP2.6(2)                             <---------YAB1       <---------ANAC58      <---------ALFIN1  <---------DEAR3(1)                         <---------DAG2           <---------ANAC46   <---------ALFIN1    --------->RAP2.6(3)     <------------CBF ------------>ATHB5         <---------LBD16    --------->ZAT18<------NtERF2----- ----->ZAT6          ------------>CBF    ---------->ID1             --------->ETT(2)    <------ZmHOX2a(1)   ctctaaatattggtccaacaaggcccaatttttgattgaatttgtctcaatggcggattcccaaaggttgtccaccgcttccggcgtcaaggacggccaa  19878000                                                                                              =======                             --------->CCA1(2)      --------------->AGL15                     ------>ZmHOX2a(2)                       <---------SPL7               <---------------AGL15                    <------ZmHOX2a(2) ---->GAMYB           --------->ETT(2)       <---------MYB52(1)                              ======== ------>AtMYB61     <-----------HVH21       <-----------HVH21                               <-------- ------MYB111(2) --------->ZAT2            --------->ANAC46                        --------->TGA1a ------MYB55(2)  --------->At4g35610       <---------ANAC55(2)                     --------->O2 ----->MYB46(3)  <---------At4g35610       --------->ANAC55(2)                    --------->LBD16 ->MYB83        --------->GLK1(2)       --------->ARR14(2)               <---------YAB1     --------- --->P   >>>>>>>>>TBF1<---------ETT(2)  <---------ARR14(2)      --------->ICU4    <------NtERF2 ->MYB46(1) >>>>>>>>>TBF1--------->SPL7 --------->GLK1(2)  ----------->GT1      <---------LBD16   ccaccatggaagaagaagaagctgtcgaacgatacgacttcgaatccgtcacttccatatgatgtaatactgatcatcttagcccgcgtctcgagatcgt  19878100                                          ------>ZmHOX2a(1)                                         --------->TOE2(3)                           <---------HSFC1(2)     <---------LBD16                           --------->HSFC1(2)  <---------ZAT14              ============================HOX2a_HOX2a                                --------->ARR14(2)      <-----------ARR10 ---------->DOF2 <---------ICU4                  <-----------------AGL1  <---- ====================HOX2a_HOX2a     --------->WOX13(1)                 --------->HSFB2a(1)   <------ ====================HOX2a_HOX2a   ==============HOX2a_HOX2a           ------->TEIL  <---------ARR14(2) -ARR11(3)    ------>ZmHOX2a(1)    <------ZmHOX2a(2)     <----------DOF2<-----------------AG  ------- >ARR11(3)   --------->TOE2(3)     <---------ATHB12 --------->LBD16    --------->ARR14(2)    <-------   attacacaaatctctccttagtctccaaaagcttccgatcaatccttacttcaccggagctttacaaaacccgaaccctcttaggcaaaaccgagaattt  19878200                                                                                    --------->ANAC58                                                                        --------->TOE1(3)                                                                  <---------ATHB12  --------->ANAC46         <---------ANAC58                                       ------>MYB83        --------->ANAC58         <---------ANAC58                   --------->ZAT14     ------>MYB46(1)  <------ZmHOX2a(2)   <---------YAB1                           <---------ZAT18   --------->TOE2(3) <-----------HVH21 -------GT1                         ------>ZmHOX2a(1)    ===============================HOX2a_HOX2a ---HSFB2a(1)               <---------At4g35610         --------->ANAC46--------->TOE2(3)           > -->HSFB2a(1)              ------->TEIL <---------TOE1(2)<------ZmHOX2a(1) --------->MYB52(1)    >>>> --KAN4(2)              <---------REM1(1)<---------MYB46(3)   <---------MYB59--------->MYB46(3) xxxxx   tctctatgtttgcttacgcttccctgatgaagctaatcctcgctggttcactctctacaggaaacctaatcaaaccctaaccgatcacaccactaagaag  19878300                                                                                                  <--                                                                                               ------                                <---------ZAT6                                                 <-----         >>>>>>>>>TBF1          ----------->GT1                                               <------      >>>>>>>>>TBF1           <---------ANAC55(2)                                      --------->At4g35610   >>>>>>>>>TBF1     <------ZmHOX2a(1)               --------->TOE2(3)                 <---------At4g35610 >>>>>>>>TBF1     <------ZmHOX2a(1)       <---------MYB52(1)                         <---------WRKY12 >>>>>TBF1  >>>>>>>>>TBF1     --------->ANAC55(2)    --------->YAB1                <-----------HVH21 xxxxxxxxxxxxxxxxxx>smallRNA(se3)       <-----------RAV1(1)               ------>ZmHOX2a(1) ---------   aagaagaagaagaagaagaaggaggagaagtcaagtgttaatctgttggctccaatctcaattctcaattctcatcctgtggaatggtcagctatcatat  19878400  Previous    Next  AGI:  At5g48980.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At5g48980 [Arabidopsis Thaliana] (GB:Q9FI72); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G48990.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 19877934    to: 19879244    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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