Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        <-------TEIL                             <------ZmHOX2a(1)                  --------->ANAC46------>MYB83               <---------REM1(2)  ------>MYB46(1)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                    ---          <---------YAB1 ---------->DOF2                                 --------->ZAT6     ---------       <-------TEIL   <-----------HVH21                --------->YAB1 --------->YAB1     --------->YAB1   atttgcagtttcatgaatacacggtgtcaaaggaccaagcttcatagttcatactatgcataatgcagacaatgaacactatatcaaacaatagtaacag  19829700                                             --------->At5g28300                       <------ZmHOX2a(2)                                            ----------->GT1                           --------->ARR14(2)   ---------->DOF2                --------->ANAC58                                    <---------ARR14(2) ------>GLK1(1)                   --------->ANAC58                                    --------->AGP1- >MYB52(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <---------ICU4    --------->YAB1      ------   aaatcgaaagagacccatgtcaaaatcactctcaataagcaaaaaacagtaacaaaaaatcatttcgaattgagtaatcaaaaacccagatcgaattgag  19829800                                                  ------>ZmHOX2a(2)                                                  <-------TEIL                                                 <------ZmHOX2a(2)                                                --------->ARR14(2)                                                <---------ARR14(2)                                               <------ZmHOX2a(1)                                            <------ZmHOX2a(1)                                            =============HOX2a_HOX2a                                -                    <---------ANAC58     <-----------RAV1(2)                                       <-           <---------ARR14(2)            <---------LBD16  ----------->HVH21                        <x           --------->GLK1(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)               <------NtERF2   ----------->TGA1 <---------ANAC58<---------GLK1(2)   <---------bZIP60(1)             --------->DEAR3(1) <---------ICU4 <---------ANAC58   =====================HOX2a_HOX2a      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -------->ICU4  <---------ANAC58   <------ZmHOX2a(1)    --------->bZIP60(1)            <---------LBD16 ----->GT1 --------->ARR14(2)      ======================HOX2a_HOX2a   --------->ARR11(3)--------->LBD16   taaaaatgacgagaatttgcttacttgaactggattaggaatctcaggaggatccatgatgtgatggagttgagatgttgaaggaactcgccggagaaat  19829900                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                   --                                                                                                   --                                                       <---------YAB1                              --                                                     --------->AHL20(2)                           ---                                                     <---------AHL20(2)                           ---                                                    <---------AHL20(2)                            ---                              <------NtERF2         --------->AHL20(1)                     <xxxxxxxxx                            <---------DEAR3(1)      --------->AHL20(2)           --------->AHL20(1)--   ---------->DOF2          <---------ANAC46     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <-----------GT1  <------NtERF2            --------->ALFIN1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     XXXXXXXXXXXXXXXXXXXX>MIR865-3P      ------>MYB83 <xxxxxxxxx --------->LBD16          <-----------HVH21   --------->LBD16               --------->TOE2(3)     --- -------->LBD16       <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxsmallRNA(se3)<---------AHL20(1)<- --------LBD16  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(1)      <---------MYB59--------->ATHB12 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <-----------GT1      --------->LBD16------>MYB46(1)    <---   cgccggaaagaagaaatcgccaaataagcgtcggggaaatgttttttccccaaatttatttttgcccgaacacttaaacctaatattttttgaccattgg  19830000            <---------ALFIN1          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <-----------HVH21         --------->WOX13(1) <------NtERF2 ------NtERF2 ----->NtERF2 ------->RAP2.6(2) ------->ATERF1(2)         <---------At4g35610 ------->DEAR3(1)       --------->At4g35610 ------->RAP2.3(2)      <---------At4g35610 ------>ATERF1(1)       ----------->RAV1(2) ------>DEAR3(2)        <------NtERF2      ---------->DOF2                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------>ORA47(2)      <---------ZAT18      <---------DOF5.7(2)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ICU4 ------->RAP2.3(3)    --------->ZAT18    --------->DOF5.7(2)            --------->ICU4 xxxxxxxxxxxxxsmallRNA(fl3)--------->At4g35610------->GAMYB           --------->YAB1      <---------LBD16 ------>RAP2.3(1)     --------->ZAT14    <---------MYB52(1)    <---------ANAC58<---------ANAC58 --------ATERF1(1)    <---------ZAT14   <-------GAMYB          <---------ANAC58<---------ANAC58   <-- ------ATERF1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <-----   gccgcccatgtccatcacgtccagtccgctgatgcccatgtccgttaacgcccatgtccattaatgcctgcttcataatgggcttgtccatgcccggtcc  19830100                 <---------ALFIN1              --------->ANAC46                                                --------->At4g35610         <---------REM1(2)                                                    <---------At4g35610   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 --------->ARR11(3)   <---------ANAC58                                 <---------ATHB12    <---------ARR11(3)   <---------ANAC58<---------ALFIN1 --------->ZAT6--------->WOX13(1) <---------AHL20(2) -------MYB52(1)<---------ZAT18--------->YAB1   ------------>CBF     --------->AHL20(2)<---------YAB1 --TEIL----------->HVH21      <---------YAB1    <------ZmHOX2a(2) --------->YAB1      <---------TOE2(2)   attaggcgttggacacgggccactcgtccattttgataactctactacagatcaatcgttcaaagaaataataaaatctcagtagacctatgtttggaag  19830200                               <-------TEIL                             ------->TEIL                             --------->ARR14(2)                             <---------ARR14(2)                    --------->LBD16                   ----------->GT1                     --------->AHL20(2)                           <                   <---------ANAC55(2)                 <---------AHL20(2)                           <                   <---------ANAC55(1)                <---------AHL20(2)                           --                   <---------ANAC46                   --------->AHL20(2)                           --                --------->AGP1 ------>ZmHOX2a(2)   <---------ICU4                          ----------                --------->ARR14(2)                 <--------HAHB4       <-----------GT1   --------->DAG2                <---------ARR14(2)<---------YAB1  <---------YAB1     <------------CBF    <---------ZAT14  --------->ANAC58<-------TEIL<------ZmHOX2a(2) --------->YAB1    --------->AHL20(2)     ---------->DOF2  --------->ANAC58------>ZmHOX2a(2)        <---------GLK1(2)  ---------->DOF2        <---------TOE2(3)  ----------->GT1<------ZmHOX2a(2)<---------ATHB12--------->ICU4----------->GT1     ---------->DOF2--   aaacaagaaaatttcatagatccgtataatggatccatgattcaagattagcataattaaattcgaaagtaaattgaccttataactaaagtaaagtgaa  19830300                                                     --------->ICU4                                      --------->ARR11(3)    <-------GAMYB                     <---------AHL20(1)   <---------MYB46(3)      ----------->GT1      --------->ANAC58 ------MYB83             <------------CBF       --------->ANAC58              --------->LBD16 ------MYB46(1)       --------->YAB1  --------->AHL20(1)   <---------YAB1    <---------ANAC58 ------->MYB46(2)    <---------ATHB12--------->CCA1(1) --------->YAB1        <---------ANAC58 ------->MYB59   ------------>CBF    --------->RVE1(1)<---------ICU4         --------->ANAC55(2) ->GT1         <-----------GT1  --------->YAB1---------->DOF2               --------------->AtSPL3 ------->MYB111(1)   ----------->HVH21<---------ARR11(3) <-----------GT1<-------TEIL    <---------REM1(1)   ttaggtggttacagttttttccaatgacattgtaacataatatcttacaaaagccaatattactatttgaaaggtacttccgtactagtaatgtagggat  19830400                 --------->TOE2(3)              <-----------GT1         --------->AHL20(2)        --------->ICU4        <---------YAB1   --------->O2  --------->TOE1(3)   <---------ANAC58   --------->ANAC55(2)   ----------->GT1   <---------ANAC55(2)                               <---------TOE2(3)   <---------ANAC46                            --------->AHL20(1)            --------->YAB1   <---------O2<---------YAB1           ----------->GT1                   --------->WOX13(1)   --------->TGA1a                     <---------TOE1(3)                ------------>CBF   <---------ARR11(3)   <---------ANAC58        <---------YAB1      <---------AHL20(1)   ---------->DOF2        --------->ARR11(3)   <---------TGA1a------>ZmHOX2a(1)    <---------TOE2(3)       ----------->GT1         ---------->DOF2   ttgagacgtgattatttatccttaatattctaattagattgaaggtttatatattaagttttccatagttaaaagtcaatcttgaaacaaaaagatagtt  19830500                                                                            ----------->GT1                                   --------->YAB1                           --------->ANAC58                                --------->TOE2(3)                <---------HSFC1(2)                       --------->DAG2                            --------->HSFC1(2)                      ---------->DOF2                          --------->DAG2                    ------>ZmHOX2a(1)                         ---------->DOF2                   --------->TOE2(3)             ----------->GT1*TSS<---------LBD16         ----------->GT1----------->GT1 --------->TOE2(3)--------->YAB1     --------->ANAC58   tgagggttctcttgtaaatttcctaaaagtaaaacattaataccctaaaaatcgaaaaatcagaaaaagcttcggagcaagaaaaatcagagaaaattca  19830600  Previous    Next  AGI:  At5g48860.1    Description:  unknown protein Range:  from: 19828877    to: 19830091    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g48870.1    Description:  SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1). similar to unnamed protein product [Vitis vinifera] (GB:CAO71583.1); similar to unknown [Populus trichocarpa] (GB:ABK93999.1); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920) Range:  from: 19830564    to: 19831780    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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