Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------                                                                                            <--------                                                                                          ------>ZmHOX2a(1)                                                                                       ------>MYB46(1)                                                                                       ------>MYB83                                                                                     --------->AtMYB61                                                                                    --------->ZAT2                                                                                   ------>MYB46(1)                                                                                   ------>MYB83                                                                                  <---------ALFIN1     ---------->DOF2                                    --------->TOE2(3)        ------->GAMYB------- ------>REM1(1)                                         ------->GAMYB            --------->MYB46(3) - -------ALFIN1              ----------->RAV1(1)         --------->TOE1(3)      >>>>>>>>>MYB98 -------   acacctctaaagaacacaggcctactcttcccacaaaaacctttctccaatctctcaaccctaatccaagtctcatgccctaacccaccttcctccacac  19821900                                                            --------->YAB1                                                           <---------YAB1                                                           <---------ATHB12                                                           --------->ICU4                                                       --------->At5g28300                                                      --------->RRTF1(2)                           --------->DEAR3(1)         --------->RAP2.6(2)                        --------->AtMYB61             --------->RAP2.3(2)                        --------->DEAR3(1)            --------->RRTF1(3)                        <---------ALFIN1             --------->RAP2.3(1)                       <---------MYB55(2)           --------->ABI4(1)                               -                       --------->MYB46(3)           ------>NtERF2                                 <--               <---------ICU4                      --------->DEAR3(1)                            ---- -->ANAC58  --------->ANAC46                      --------->DEAR3(2)                         <------- -ALFIN1    <---------ALFIN1                      --------->MYB46(3)                       <---------DAG2 -->ANAC58 --------->MYB46(3)                    <---------At5g28300                       <--------- ------>GAMYB  --------->AtMYB61  <---------CCA1(2)--------->ANAC46            ---------->DOF2 ------ -->ANAC46 <---------MYB55(2)<---------MYB52(1)----------->HVH21 <---------TOE2(3)      ------>NtERF2   aactcactaccctcccaccattaccaccaccgtcgtttatcttcttcgtctcaccgccgtaatcatagaggttttttgggttaaagacgacgactttacc  19822000              <---------ZAT2              --------->At4g35610       --------->At4g35610    ----------->ARR10              --------->GLK1(1)                                        <--------  ---------->DOF2              <------NtERF2                                             <---------ANAC46 -------->LBD16               --------->LBD16                    --------->ALFIN1       <---------TOE2(3) -------LBD16 <---------At4g35610  <---------GLK1(1)         <---------ZAT14          ----------->HVH21 ----->MYB52(1)              --------->DEAR3(1)          --------->ARR11(3)          <---------WOX13(1) ----GT1  --------->LBD16 ------>ZmHOX2a(2)              <---------ARR11(3)    <---------ANAC58 -DOF2    ------>NtERF2  <------ZmHOX2a(2)             <---------AtMYB61       <---------ANAC46 --->MYB46(3) --------->ZAT2<---------LBD16       --------->ALFIN1             <---------ANAC58   accggaaagagccgcgagcttagtgagatcgccggagaaatcagatgggtatgtggagaggtcttcagtgggagagaattggcctggattgacgtagatt  19822100            --------->TGA2(2)           <-----------HVH21           <-----------TGA1          <---------ANAC58          <---------TGA2(1)          --------->TGA1a          <---------O2          <---------bZIP60(2)          <---------ANAC58          <---------ANAC55(2)          <---------ANAC46          --------->O2          <---------bZIP60(1)          --------->bZIP60(1)          <---------TGA1a          --------->bZIP60(2)          --------->TGA2(1)         ----------->STF1                                                                        <---        <---------TGA2(2)                                                                   <--------       ----------->TGA1                                                                     <--------       ----------->HVH21                      --------->ANAC55(2)                     --------->MYB52(1)      <-----------HVH21           <---------SPL7       <---------ANAC46    <------MYB46(1)--------->ARR11(3)    <---------DEAR3(1)       <---------WOX13(1) ----------->HVH21          <------MYB83 <---------ATHB12 ----------->HVH21         --------->ATHB12   <---------ANAC55(2)         <---------------AtSPL8 <--- -TOE2(2)<-----------STF1 <---------YAB1  --------->CCA1(2)               --------------->AtSPL8 <---   gagacgacggtgacgtcagtgagggctagtgattgacgaacgagagataagtgaccttcgtggaggtaacccattgttggtactaaaccaatggtcttgc  19822200     ------>ZmHOX2a(2)   --------->ARR11(3)   <---------ARR11(3)                                                        <---------TOE2(3) ------ANAC46                                                                <---------YAB1 -ANAC58                                                           --------->ETT(1) -ANAC58                                                    <-----------------AGL1 ------ANAC58                        <----------DOF2        ----------------->AGL1             ------ ------ANAC58              <---------YAB1    <---------YAB1>>>>>>>>>>>>>>>>>LFY               -------   cttgtgatctcatggctcgagaccattttctcatagagtctttgtctctgattacttctggttccattgtcggaaaattgagattgtcttccgacgaatg  19822300                                                                               <------MYB83                                                                               <------MYB46(1)                                                                               ----------->GT1  <----                                                                           --------->ATHB12  <-------                                                                          <---------YAB1  <----------   *TSS                                                    --------->ARR11(3)  <---------MYB46(3)  <---------ANAC46                            <-----------HVH21        <---------AHL20(2) --------->MYB52(1) --->HSFB2a(1)                           <-----------GT1   --------->GLK1(2)<------------CBF ------->GAMYB >TEIL         --------->MYB52(1)    --------->YAB1        <---------ARR11(3)<---------WOX13(1) -----   tttctcgtggagagagataactggaattatctaaaccaaaaataaaccggtcatagaacaaaatctatgggattttatgattggttaaatattaaccgaa  19822400                                                                                     --------->ARR14(2)                                                                                     <---------ARR14(2)                    <---------MYB52(1)                                        ---------->DOF2                   <---------MYB52(1)                 <-----------GT1  ----------->GT1   --------->HSFB2a(2)    <---------AHL20(2)                         --------->ANAC58        <---------MYB46(3)<---------HSFB2a(2) -----ARR14(2)    --------->LBD16              --------->ANAC58      <-------MYC3   <---------HSFC1(2) --MYB59     --------->KAN4(2)               <---------ALFIN1        <-------MYC2   --------->HSFB2a(1) -GT1       <----------TaMYB80              --------->MYB46(3)       ------->MYC2   --------->HSFC1(2) ---->ARR14(2)  <---------LBD16           --------->ARR14(2)         ------->MYC3   <---------HSFB2a(1)   tttgaattttttgtatattccggtttgttttcgatagatttcaagaaccacgcttgtaaccggtctaagaacgtggttacaaaagaaaattcgcgaacca  19822500                                                             --------->ICU4                                                           <---------TOE1(2)        --------->HSFC1(1)                                                    --------->SPL7         --------->LBD16           --------->LBD16                        <---------SPL7           --------->ANAC46          <---------HSFB2a(2)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   --------->DEAR3(2)          --------->HSFB2a(2)  ----------->GT1   --------->TOE1(1) --------->At4g35610       ------>MYB83           --------->DAG2     --------->TOE2(1) ----------->RAV1(2)    --------->GLK1(1)       ------>MYB46(1)--------->ZAT18<-----------GT1<---------TOE1(2)------->GAMYB  <---------HSFB2a(2)       <---------ARR14(2)    ---------->DOF2   <------------------SPL14 ------->TEIL--------->HSFB2a(2)   gacttaacctatccagaaaacgagtgagccataaagtttatactgtccccctcgtacgtcgtaagtatcaactgaaccggcaacttctagagatttcatg  19822600                                                                                                <----                                              <---------ARR11(3)                      --------->ATHB12                                              --------->ARR11(3)  <----------DOF2 ----------------->AGL3                            <---------DAG2    <---------GLK1(2) <---------At4g35610   --------->ATHB51 <---------YAB1             <----------DOF2  <---------RVE1(1)  --------->At4g35610<---------------AGL15   gttttcattctatttcgctaaaaatactcactttatcggagtttgagagattttgcaaaaacttggagcttaaatgaagttgttcccattatttgttgta  19822700                                                                    <---------YAB1                                                                  --------->YAB1                                                                  XXXXXXXXXXXXXXXXXXXX>MIR835-3P                                                                 --------->ICU4                                                                 <---------YAB1                                                               --------->YAB1                                                       ---------->DOF2 --------->CCA1(2)           ---------->DOF2                           --------->At4g35610             --------->ANAC46    ----------->GT1         <-----------GT1     --------->DAG2--------->ICU4 --------->ANAC58   <---- -----------AtSPL8      <---------AHL20(2)     ---------->DOF2<---------YAB1 --------->ANAC58  ------   tgtacaaagttactaaagagaaacatatatttacaactcatcaaaactataaagcagcaaagctatgatgatgatacacaagaaaacacagaatgaatta  19822800  Previous    Next  AGI:  At5g48840.1    Description:  PANC (Arabidopsis homolog of bacterial panC); pantoate-beta-alanine ligase. Identical to Pantoate--beta-alanine ligase [Arabidopsis Thaliana] (GB:Q9FKB3;GB:Q682X9); similar to Pantoate--beta-alanine ligase precursor (Pantothenate synthetase) (Pantoate-activating enzyme) (GB:O24035); contains InterPro domain Pantoate-beta-alanine ligase; (InterPro:IPR003721); contains InterPro domain Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729) Range:  from: 19820783    to: 19822303    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g48850.1    Description:  male sterility MS5 family protein. similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT1G04770.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61444.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR2 (InterPro:IPR013105); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 19822663    to: 19824985    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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