Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->YAB1            --------->ANAC58                                                 <---------YAB1             --------->ANAC58        ------>ZmHOX2a(1)              <---------ZAT14              ------->TEIL    <-----------GT1                <------ZmHOX2a(1)       --------->HSFB2a(2) <---------GLK1(2) <-----------------------TaNAC69(2)      <---------HSFB2a(2)   --------->YAB1 -----   agtgattctccttccaagagagacatgaaatgctggaggactattctggctatcatagtttctataaacgaatgtagcacgaatcagaactgaagacaag  19786200                                                 --------->GLK1(2)                                               <---------KAN4(1)                                          --------->LBD16                                         <---------LBD16                ----------->GT1         ------>ZmHOX2a(2)                                      ------              <---------ANAC46          <---------LBD16                                       <------         --------->ANAC58              <------ZmHOX2a(2)                                  <---------MYB52(2)         --------->ANAC46             --------->ARR11(3)                                 --------->ANAC58         ----------->GT1              <---------ARR14(2)                                 --------->ANAC58         --------->ANAC55(1)          --------->ARR14(2)                             <---------ANAC46         --------->ANAC58             --------->GLK1(2)      --------->ZAT6         <------NtERF2        <---------TOE2(2)   ------>NtERF2<---------ANAC46   <---------ZAT14       <---------DEAR3(1)    ------>ZmHOX2a(1)      --------->ETT(2)    --------->KAN4(1)          --------->GLK1(1)  <-------    ----------->HVH21      <---------RAP2.6(2)<---------KAN4(2)           <---------GLK1(1) --------- ------------------>TaNAC69(2)       <------ZmHOX2a(1)     <<<<<<<<<<<<<<<<<LFY <---------ALFIN1 ----   tctttcctcacaggtaacttgtaacattggcgaccttgaggatccgggaataatctgatgggaacactggaagtagaattcccctcggcgtaagtaaccg  19786300                                                                          <------NtERF2                                                                         <---------ATERF1(1)                                                                         ------>NtERF2                                                                         <---------RAP2.6(3)                                                                         <-----------HVH21                                                                        --------->ATERF1(2)                                                                        <---------ATERF1(2)                                                                        --------->ANAC46                                                                        --------->ANAC58                                                                        --------->DEAR3(1)                                                                        --------->RAP2.6(2)                                                                        >>>>>>>>>>AtTINY2                                                                        >>>>>>>>>AtERF-5                                                                        --------->RAP2.3(2)                                                                        >>>>>>>>>AtERF-4                                                                        >>>>>>>>>AtERF-3                                                                        --------->ANAC58                                                                        >>>>>>>>>AtERF-1                                                                        >>>>>>>>>AtERF-2                                                                        >>>>>>>>>AtERF-7                                                                        --------->RRTF1(3)                                                                        --------->RAP2.3(3)                                                                       --------->ATERF1(1)        <---------ANAC55(1)                                            --------->DEAR3(2)        <---------ANAC58                                               --------->RRTF1(1)        --------->ANAC55(2)                                            --------->RAP2.3(1)        <---------ANAC55(2)                                            --------->ERF1        <---------ANAC46                                              <---------At4g35610      <-----------GT1                                       ----------->GT1          --------->At4g35610   <---------ZAT6                                        <---------DEAR3(1)    <---------YAB1 ->GAMYB<---------ANAC58                                --------->At4g35610----------->RAV1(1) ------AtMYB77                                          <---------At4g35610<---------ALFIN1 --At5g28300              <---------MYB52(1)         --------->At4g35610--------->RRTF1(2)--------->ANAC58 >MYB52(1)          <---------YAB1                  --------->ANAC46  --------->At4g35610 --------->ANAC46 ----->ALFIN1       <---------AHL20(2)       ----------->GT1--------->ALFIN1 --------->O2 --------->ANAC58   tggtagtgttacctgtttcgatataatcgttgtctgaaacccatgagatgttataagcagcggtgtaacttgagccgccacatgataagctcaagaaacc  19786400                                                                     --------->GLK1(2)                                                                     <---------ARR14(2)                                                                     --------->ARR14(2)                         --------->At4g35610                        <---------GLK1(2)       XXXXXXXXX                  <---------ATHB12                               <---------HSFB2a(2)       XXXXXXXXXX                --------->WOX13(1)                         ---------->DOF2       ----------->RAV1(2)              <-------TEIL             <---------------AtSPL8    --------->HSFB2a(2)     ----------->GT1   tgttccatcacaaagattcaatcaaacagttgaaggcaaaatgagtacaaataatgtgagacaaagtctagaatctgcataccatctggactggagaaac  19786500                                                                                                  ---                                                        <---------GLK1(1)                        ----                                                    <---------WOX13(1)                           <---                            ---------->DOF2       --------->ATHB12                              -----                XXXXXXXXXXXXXXXXXXXX>MIR1887     <---------YAB1                                 ----- XXXXXXXXXXX>MIR164A/B   ============================================================================ XXXXXXXXXX>MIR164C      --------------->AGL15   ------>ZmHOX2a(1)        <-----------GT1      *TSS   aaaacacacagaaactactgagcaaaacccaaaagagcatgttctaatttcctgattgaaatctgaagaacatatataactaattgttctatattgtttc  19786600                                                             <---------YAB1                                                           <---------ICU4                                                           --------->YAB1                                                          --------->ICU4                                                          <---------YAB1                                                        --------->YAB1     <---------DAG2        <--- --->ZmHOX2a(1)                <---------YAB1           <---------ICU4     <----------DOF2       <--- ----------->AGL15        <---------AHL20(2)           <---------ATHB12  <-------TEIL            ---- ------MYB59             --------->AHL20(2)            --------->ICU4 <------MYB46(1)      --------->YAB1 ------------>AGL1    <-----------TBP              ------------>CBF   <------MYB83  <---------ZAT6 ------------>AG    <----------DOF2             <---------ARR11(3)   <---------TOE2(2)    --------->At4g35610 ============MADS_MADS--------->AHL20(2)        --------->ARR11(3)   <---------TOE1(2)    <---------At4g35610   ctaatttgtgagtgaattcattctttatataatatgagtgtctgtgtgaagatgtcaatgatgatgactcgtaggtactttacttagtggtcatcagaat  19786700                            --------->AHL20(2)                                         <-----------HVH21                            <---------AHL20(2)                                        <---------ZAT6                           <---------YAB1                                      <----------DOF2                         --------->YAB1                                       ------>ZmHOX2a(2)     ------->GAMYB      <---------YAB1  <-----------GT1                      <------ZmHOX2a(2)    --------->ZAT6     --------->AHL20(2)                                   --------->ARR11(3)  --------->MYB52(1) <---------YAB1    --------->AHL20(2)                   <---------ARR11(3) ------ZAT18      --------->AHL20(2)  --------->AHL20(2)     <-----------GT1--------->AGP1 ------ZAT14    ----------->GT1   <---------YAB1        <---------AHL20(2)----------->ARR10 ----->ZAT18<-----------HVH21   <-----------GT1    ------->TEIL--------->ZAT6<---------RVE1(1)   gcactaacagtcagtgtcaagttaatattataaattacaatttaactaaaatgaatgtttatttaacaatagaagtgagatctttttagtgtcaaatatg  19786800                                       --------->At4g35610                                     <--------P                                    <-------GAMYB                                    <---------ANAC58          --------->YAB1<---------ANAC46                                    <---------ANAC58       <---------ICU4   <---------ANAC58                                   <---------MYB46(3)     --------->ICU4    <---------ANAC58                   ---------->DOF2 <------MYB83         --------->YAB1  <---------ANAC58            <              ----------->GT1      <------MYB46(1)     <---------YAB1   <---------ANAC58           --       ----------->GT1            --------->MYB59    --------->YAB1   <---------YAB1              <--      ----------->GT1    ----------->GT1           <---------TOE2(3)--------->YAB1 --------->GLK1(1)-   gtatttgtgagttaaaatgtaaaaagagagcaaaatttggttgctcaatttttaagaatgataatgagaatgatgcttgagtgagaattcttcaaatgca  19786900                                                                       --------->GLK1(2)                                                                    <XXXXXXXXXXXXXXXXXXXXMIR399A                                                               --------->DAG2                                                          --------------->AGL15                                                          <---------------AGL15                                                          ------>ZmHOX2a(1)                                                          ===========================================                                                         --------->TOE2(3)<----------DOF2                                                         <---------------AGL15                                                         <-----------------AGL3                                                         <-----------------AGL1              <---------ANAC58                           --------------->AGL15            <---------YAB1                              ----------------->AGL3      <---------TOE2(3)                         ------>ZmHOX2a(1) ----------->GT1                 --- ---------ARR11(3)       --------->ZAT6      ------>ZmHOX2a(1)---------->DOF2--------------------->WRI1 ------->YAB1 <---------AtLEC2    ------>ZmHOX2a(1) <---------At4g35610--------->ARR11(3)         --- -------ATHB12<---------ANAC58   --------->TOE2(3)  --------->At4g35610<---------ARR11(3) --------->DOF5.7(2) -------->ARR11(3)    --------->REM1(1)  ------->TEIL   =============================================   atgatatttatgttttgcttggcttcaacactaatcctcaatgcatcctccttaagcttccttataaagggaaaatcttttttggacaaatcgtttacat  19787000            <---------CCA1(2)----------->GT1                                             <---------MYB52(1)          <---------------AGL15                                                         --------->TOE2(3) ---------->DOF2           ---------->DOF2                                             ----------->GT1 =========================MADS_MADS                                       --------->ANAC55(2) ------>ANAC58         <----------ID1                                <---------------AtSPL8 ------>ANAC58      ---------->DOF2      <---------ICU4 --------->TOE2(3) <---------ANAC55(2) =========================MADS_MADS      <---------AHL20(2)          --------------->AtSPL8         <   acccaaagtctcccataacttgaaaaggagaaagaaaaactaattaatgcctcaaaaacataaatctgtatttagtacttaattcaaaatcgttaatctc  19787100  Previous    Next  AGI:  At5g48740.1    Description:  leucine-rich repeat family protein / protein kinase family protein. similar to kinase [Arabidopsis thaliana] (TAIR:AT2G37050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46115.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66019.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains Range:  from: 19782421    to: 19786595    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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