Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         <-------TEIL                       ----------------->AGL3                     --------->ARR14(2)                     --------->AGP1                     <---------ARR14(2)                    --------->At4g35610         --------->ATHB12                                                                           <         <---------AHL20(2)                                    <----------ID1                    <---        --------->AHL20(2)    <---------RAP2.6(2)          --------->AHL20(2)                  <-----   <---------At4g35610<------ZmHOX2a(2)                    <---------AHL20(2)         --------->TOE2(3) ->HSFB2a(2)     <---------At4g35610 ---------->DOF2 <---------ALFIN1            <---------AHL20(2)<-   acttcagctatttattggcatcagatccattttcggctaaaaagaagttatagtcacacattaaaatgacaaatagaacacatttttttcttaaacagat  19780000          --------->ALFIN1                                ----------->GT1      --------->HSFB2a(2)                                 --------->TOE2(3)                       ---      <---------HSFB2a(2)                                ----------->GT1                          --- -----------GT1          <---------AHL20(2)     --------->ANAC46                                  <-- ------ICU4      --------->CCA1(2)              --------->AtLEC2     --------->WRKY12      <---------AHL20(2) ----GLK1(2)    <---------ARR11(3)              --------->ANAC58 --------->DAG2            <---------YAB1 --------YAB1   --------->ARR11(3)              --------->ANAC58---------->DOF2           <---------AHL20(1)   tattacttctaggtggaagatatatgttttatttgcacaatacttcttacatgcaaaaaatgttaaaaaagttgacgagatagtttagataatattattt  19780100                             <---------ANAC55(2)                            <-------TEIL                        <---------AHL20(2)                        <---------ICU4                       --------->AHL20(2)                     --------->YAB1                    <---------YAB1                                     <<<<<<<<<<WRKY43                   <---------AHL20(1)                   <---------AHL20(2)    --------->YAB1 <---------AHL20(2)                  --------->AHL20(2)           --------->AHL20(2) --------->YAB1    --------->AHL20(2)                  <---------AHL20(2)           <---------ATHB51 ------>HSFB2a(2)  --------->AHL20(1)              <---------YAB1      <<<<<<<<<<WRKY26 ------>HSFC1(1)  --------->YAB1                 --------->YAB1        <<<<<<<<<<WRKY38 -------HSFB2a(2)<---------YAB1               --------->YAB1      <----------DOF2   <---------AHL20(2)   cgagaataatacaaaacttattataataaatacataagtatttttcagtaatcacgattaatttttgtctttggtcaaatttctaaataattcaaagaat  19780200                                      <---------AHL20(2)                                     <---------AHL20(1)                                     --------->AHL20(1)                                           <--                                     <---------AHL20(2)                                          <---                                     --------->AHL20(2)                                          ----                         --------->AHL20(2)                                                      <---               <---------ICU4   <---------AHL20(2)                                               ----               --------->ATHB51 --------->AHL20(1)                                    ----------->RAV1(2)              <---------YAB1    --------->AHL20(2)                            <---------AHL20(2)<----              --------->ICU4 --------->YAB1                             --------->TOE2(3)   ---------   tttgggcccaaaactcattatttcgaattaaaaataaaataaaatttgtgtttttttttgttttggtcacatttcattagttatttgggcctggcccaat  19780300                                                                   ----------->GT1       --------->YAB1                                              <------MYB46(1)       --------->AHL20(2)                                       --------->ARR14(2)  --------->AHL20(2)                                           --------->ATHB12  ------------>CBF                                             <------ZmHOX2a(1) -------AHL20(2)                                             <---------TOE1(2) ------AHL20(2)                                             <---------LBD16 ----->YAB1                                      ------>ZmHOX2a(1) <---------MYB46(3)             --- ------AHL20(1)                                 --------->TOE2(3)  <------MYB83                   --- ----->AHL20(2)         <----------DOF2         --------->TOE1(3) <---------AtMYB61        --------->AtMYB61 -----ATHB12          ---------->ID1           ------>ZmHOX2a(2)<------------CBF        <---------ALFIN1 --->CBF             <-----------GT1           =======================HOX2a_HOX2a<-----------GT1  ---   aaaattcaataaaactttccatttttcttttttcttcagtaatgtctgatccttaaattttctcaggattggttcaaatggtttcactctccacctccac  19780400                                     <------NtERF2                                   <---------DEAR3(1)                                   <---------ANAC46           --------->AtMYB61      <------NtERF2           <---------ALFIN1       --------->ATERF1(1)          --------->MYB46(3)      <---------LBD16         ------>NtERF2           <---------ORA47(2)        --------->RAP2.3(3)      <---------ATERF1(1)        <---------ALFIN1        <---------DEAR3(1)        --------->DEAR3(1)     --------->RAP2.6(3)       <------NtERF2           --------->SPL7      ------>NtERF2           --------->MYB52(1)      <---------ATERF1(1)    <---------SPL7     --------->ANAC58        ----------->HVH21     --------->ANAC58       --------->DEAR3(1)     --------->ANAC46      <---------LBD16    ------->PIF5          --------->MYB52(1)                                              --------->ANAC55(2)    ------->MYC2         --------->DEAR3(1)                  --------->ARR14(2)           --------->ANAC46    <-------MYC3         ------->GAMYB                    <----------DOF2                 --------->ANAC58    ------->MYC3         ------------------>SPL14         ============================bZIP_DOF    <-------MYC2         --------->ANAC46               <---------At4g35610 =========================    <-------PIF5        --------->MYB46(3)              <------NtERF2       --------->TGA1a   --------->ANAC46     <------------AtMYB77            --------->At4g35610 <---------TGA1a   --------->TGA1a      <---------MYB55(2)            --------->SPL7        --------->ANAC58   ==================================MYC_MYB        <---------SPL7          --------->O2  <---------ANAC55(2)   --------->ANAC58     --------->DEAR3(2)       <---------At5g28300        --------->ANAC46   --------->ANAC58    <---------At5g28300      <-----------GT1             <---------O2<-----------GT1   ==============================MYC_MYB     =========================================bZIP_DOF   <---------ALFIN1    -------->P<---------RAP2.3(1)<-----------HVH21       --------->ANAC58 ------>ANAC58        --------->MYB52(1)     <----------DOF2 ------->TEIL <---------ALFIN1--------->ANAC58 ------>ANAC46      <---------MYB52(2)    --------->ARR11(3) <---------ARR14(2)      <---------ICU4 ------>ANAC58--------------------->WRI1  <---------ARR11(3)<---------CCA1(2)      <---------MYB59   tagccacgcgccaccacttccgactaaccgccggacggcggagagaacttttaccgtccgctgtatctccatctccccacgcgagcctaattacgcaatt  19780500                                                                          <---------ANAC58                                                                          <---------ANAC46                                                                        <------ZmHOX2a(1)            ----------->RAV1(1)                                      --------->At4g35610        <----         --------->ANAC58               --------->O2                 <---------At4g35610        =====         --------->ANAC46               <---------O2              <---------ZAT14               =====         --------->ANAC58              <-----------------------TaNAC69(2) <---------ANAC58<-------TEIL       ---------->DOF2                --------->CCA1(2)       <---------ICU4             --------->CCA1(2)  --------------->AGL15       <---------ANAC46  --------->ANAC58  --------->ZAT14        --------->GLK1(2)  <---------------AGL15    ---------->ID1       --------->ANAC58 --------->AtLEC2       --------->ARR11(1) =================bZIP_DOF<-----------HVH21   ---------->DOF2<---------ATHB12     ---------->DOF2   acttccgataaaagcaacaatacctccttgtcgcttagagagacgagacaaagcaaatggctaatcaatgcagaggacgtgaatgaaagagattcgaagg  19780600                               <---------HSFB2a(2)                               --------->HSFB2a(2)                            <----------DOF2                         ================HOX2a_HOX2a                        =================HOX2a_HOX2a                        <------ZmHOX2a(2)                       <---------ARR11(3)        =======================HOX2a_HOX2a                                     --------->ATHB12        ========================HOX2a_HOX2a                                   <------ZmHOX2a(2)        <------ZmHOX2a(1)------>ZmHOX2a(2)                                    <---------ATHB12  ---------->DOF2      --------->ARR11(3)                        --------->At4g35610 --ZmHOX2a(1)     --------->ANAC46<------ZmHOX2a(1)      --------->LBD16      <---------YAB1 ===============================HOX2a_HOX2a      --------->YAB1 --------->ANAC58 ==============================HOX2a_HOX2a   ----------->GT1    --------->ANAC58         >>>>>>>>>TBF1   agattaaagaggataagaacacgaagatcgcttcgaggaaggcgatatcgataatactccgaagagaagctacaaaatcgatcattgagaagaagaaagg  19780700                                                                                 <-------TEIL                                                    --------->ZAT14             <--------P                                                    <---------ZAT14          <---------TOE2(3)   ----                                       --------->ANAC58           --------->GLK1(2)             -----                  <------ZmHOX2a(1)    --------->ANAC46           --------->ARR14(2)            -----      --------->HSFB2a(1)              --------->ANAC58           <---------ARR14(2)            -----      <---------HSFB2a(1)           <---------REM1(2)             ---------->TaMYB80           <-----      --------->HSFC1(2) <---------ANAC58           <---------ZAT18<---------At4g35610   <<<<<<<<<TBF1      <---------HSFC1(2) <---------ANAC58---------->DOF2         <---------GLK1(1)  <---------GLK1(1)   ctcgaagaagcttcttccaaggactgtgcttgagtctcttcacgaaagaatcactgctctccgatgggaatctgctattcaggtagatttcttcttctcc  19780800      <---------------AGL15      --------------->AGL15     <-----------------AGL2     <-----------------AGL1     <-----------------AGL3     ----------------->AGL2     <-----------------AG     --------->TOE2(3)  --------->YAB1                                                             <---------ARR11(3)  <---------ICU4                                                             --------->ARR11(3) --------->ICU4                      ----------->GT1                 <------MYB83 ----->LBD16                      --------->YAB1                     <------MYB46(1) ---->ANAC58                      <--------ATHB1                    --------->MYB59 ---->ANAC58                     <---------ATHB51                 <---------MYB52(1)         ------->TEIL ---->ANAC46                     <---------ATHB12               <---------YAB1   <---------YAB1 ----LBD16     <--------P        --------->ICU4           <---------YAB1     <---------GLK1(2)   gcaattatctcaaattggtaagtttagttttggcaataatagtgaatttgatacactaatttgattatgttaggttatagattttgatatagatgaatgt  19780900  Previous    Next  AGI:  At5g48730.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G53170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46133.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 19780378    to: 19782498    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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