Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <------ZmHOX2a(2)            --------->CCA1(2)           --------->AGP1           --------->ARR11(3)           <---------ARR11(3)           --------->ARR14(2)           <---------ARR14(2)                                                     --------->ZAT2    --------->ATHB12                                                 --------->ZAT14    <---------ICU4                               <---------ATHB12    <---------ZAT14                <    --------->YAB1                             --------->WOX13(1)  <---------bZIP60(1)          <----   --------->ICU4                <---------ARR11(3)   --------->ATHB12            <---------At4g35610   <---------ATHB12              --------->ARR11(3) <<<<<<<<<<<<<<<<<LFY    --------->At4g35610 -----   cccaaatcattaagatccacaatattcaaatgaaacatctccatgtttccaatcaaacattggaacatgacttcagtcatctctagctccctactatcct  19756700                                                                                               <-----                         <----------DOF2                                                       ------         ------>ZmHOX2a(1)                                          <----------DOF2     --------->HSFB2a(2)    ---------->ID1   ---------->ID1 <----------DOF2           -------->P                <---------HSFB2a(2) ----------DOF2    <-----------RAV1(1)                       <-----------GT1           <---------LBD16 ------DOF2---------->DOF2      <---------GLK1(2)           ------>ZmHOX2a(2)    ==================== ->ZmHOX2a(1)   --------->GLK1(2)--------->GLK1(2)        <---------ARR11(3)     ------>ZmHOX2a(2) --   ttctttgtctcctcaaagtttctgtcgctttcgcgattctttgtttgagaaaaccctcttgatctaccatctttttgtgttgatccatctctgggagtgt  19756800                                                            <---------SPL7                                                      <------MYB46(1)                                                      <------MYB83                                                     --------->MYB111(1)                    ---------                                                     --------->MYB46(2)            ------->PIF4                         <---------LBD16             <---------AtMYB61             <-------PIF4                        --------->MYB52(1)           --------->MYB111(2)           ------->MYC3               <---------DAG2                        --------->MYB59               <-------MYC3              ------>MYB46(1)                        <---------MYB46(3)            ------->PIF5              ------>MYB83 --------->LBD16          <--------P                     <-------MYC2            <---------ALFIN1                  <---------ZAT14                      <-------MYC4 ----ZAT18  --------->AtMYB61               =================MYC_MYB               <-------PIF5 --->ZAT18 --------->MYB46(3)<---------GLK1(2)--------->ZAT14                      ------->MYC2   --- =====HOX2a_HOX2a      <---------ALFIN1     --------->TGA1a--------->YAB1     ------>ZmHOX2a(2)------ ---->ZmHOX2a(1)       --------->ANAC46   <---------ALFIN1<---------YAB1<---------At4g35610 <--------   cctaaattctgaaaccaccctttgcacaccggaatttgatggccacacttcagggttggtatcatacgggctgtagatgatcgcacatgcagtgatgcca  19756900                  ------->TEIL                 <---------CCA1(2)                                                    --------->ANAC46 >bZIP60(1)  <---------ANAC58                                                         --------->ANAC58 ------->DOF2<---------ANAC46                      ---------->DOF2     --------->GLK1(2)          <-- ----->RAV1(1)--------------->AtSPL8       <----------DOF2 <---------DAG2--------->ATHB12      <----- -bZIP60(1)  <---------ANAC58          <----------DOF2     <----------DOF2            --------->ANAC58   caaagagtcgagagttcgtgtaccttcttcatcaaacccttctttctttttttgaaagtcgcttttcttgaagaatcgttggaaatgtaagcaagtttca  19757000                                                                                           <---------AHL20(2)                                                                                           <---------                                                                                           --------->AHL20(2)                                                                                         <-----------TBP                    <---------ARR11(3)                                                   <-----------                    <---------AHL20(1)                                            ----------->GT1         <---------YAB1                                                     <---------------AtSPL3     <---------ANAC58        <----------DOF2 <---------AHL20(2)             <---------------AtSPL8     <---------ANAC58   <-----------GT1     <---------AHL20(2)       ----------->GT1     --------->AHL20(2)  <----------DOF2   --------->AHL20(1)  <----------DOF2            *TSS<---------YAB1    <---------AHL20(2) --------DOF2       --------->ARR11(3)---------->ID1               <------------CBF    <-----------TBP ------GT1       --------->AHL20(2)  <-----------GT1             <---------TOE2(3)<---------ZAT6   ctttctttcttgtcattgaaaaaatatttctctttgttttttcttttttatttgtgtattttgttttgagattgtgaatatgtactgttatatatatata  19757100                                                                                  <---------At5g28300                                                                                 <-----------GT1                                                                              <---------ICU4<--------                                                                             --------->AHL20(2)                                                                            <---------AHL20(2)       ----------->GT1                           <---------TOE2(3)       --------->AHL20(2)<---------AHL20(1)   ---------->DOF2                        <---------AHL20(2)        --------->AHL20(2)     <---------AHL20(2) <---------YAB1      ---------->ID1       --------->AHL20(2)      --------->AHL20(2)       --------->AHL20(2) --TBP<---------------AtSPL8       ----------->HVH21      <---------MYB52(1)<---------AHL20(1)    --- ----AGL15<-------TEIL   <----------DOF2 --------->AHL20(2) ----------->GT1 --------->AHL20(1)    <--   gtaatgaaagggtacaaaattttgtttcttttagtaagtgacatttaattttagattacaggtagtcaaaaaatataaaatatttactgctaataaaatt  19757200                     --------->AHL20(2)                                             --------->GLK1(2)                     <---------AHL20(2)                                        --------->AHL20(2)           <---------ARR14(2)                                                  <---------AHL20(2)           --------->ARR14(2)                                              <---------YAB1<---------AtLEC2           <---------ARR11(3)        --------->ARR11(3)                   <---------AHL20(2)           --------->ARR11(3)        <---------ARR11(3)                   <---------AHL20(1)          --------->GLK1(1)          --------->GLK1(2)                    --------->AHL20(2)        ----------->GT1      --------->ANAC58                   <---------AtLEC2    <---------ARR11(3) -AHL20(2)<---------GLK1(1)  --------->ANAC58            --------->TOE2(3)--------->AHL20(1) -------->GT1      <----------DOF2  --------->RVE1(1)    --------->YAB1  --------->AHL20(2) -------ZAT6  <----------DOF2--------->ANAC46       <---------ATHB12 ------->TEIL  --------->RVE1(1)   gtgttatatagggtatcttttcttttattacaagaaaaaaatctaaacgtccaaatcaagcttaatgcatgaacattatattaaaaaatctgaatggatt  19757300      <---------At4g35610      --------->At4g35610  <-----------GT1   <-------TEIL  <---------MYB52(1)               ----------->HVH21        ---------->DOF2   --------  --------->CCA1(2) <-----------GT1    <------ZmHOX2a(1)         <---------YAB1      >>>>>>>>>GATA-1   ttagatacagatgaaaaccgtttttcattttacatgtattaggactactggtttgacatatgaaaatactattgtccaaaagtcatagataaatattgta  19757400                                                                         --------->ANAC58                                                                    --------->YAB1                      <---------YAB1       <-----------GT1       --------->YAB1                    --                 <---------YAB1 --------->AHL20(2)         <-----------GT1                         <-               --------->YAB1   --------->AHL20(1)    <----------DOF2    --------->ANAC58         ---              <---------YAB1    <---------AHL20(1)    <---------DAG2<---------ICU4          --------- --->GT1      ----------->GT1   <---------AHL20(2) <-----------GT1 --------->ICU4 --------->WOX13(1)   ttaatctaatatgagaatgataatatgaaaacaataaaatagaataaacaattttactttttaacaacaataatcaagaaatatcaatctagtaatgtta  19757500                                   <---------AHL20(2)                                   <---------YAB1                                   --------->AHL20(2)                                  --------->AHL20(1)                                  <---------AHL20(1)                                  --------->AHL20(2)                               --------->AHL20(2)                              --------->ARR11(3)                           <---------AHL20(2)                            --------->YAB1                           --------->AHL20(2)                           <---------YAB1                       <--------HAHB4                               <------MYB46(1)           ------->TEIL--------->ATHB51                             <------MYB83   --------->YAB1      -------->ATHB1                              --------->MYB59        --------->GLK1(2) ------->AHL20(2)      <---------AHL20(2)                       --------->ARR14(2)       --------->ARR11(3) --------AHL20(2)      --------->AHL20(2)                    <---------TOE1(2) <---------ARR11(3) ------>AHL20(2)      <---------ATHB51            <---------YAB1<---------ARR14(2)       <---------GLK1(2) -->GT1  <-------TEIL --------->ICU4            ----------->GT1<------ZmHOX2a(1)    <---------WRKY45   tttaatcaaaatgcatttagtacaattatttaaaaatataatttcaaatattgtgataactagtaggatttggtattataagatagtcaaagattctgtt  19757600  Previous    Next  AGI:  At5g48670.1    Description:  AGL80/FEM111 (AGAMOUS-LIKE80); DNA binding / transcription factor. similar to MADS-box protein (AGL35) [Arabidopsis thaliana] (TAIR:AT5G26630.1); similar to sequence-specific DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G27810.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65747.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 19755942    to: 19757067    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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