Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->TOE2(3)                 ------>MYB46(1)                 -------->P                 ------>MYB83               --------->AtMYB61                        --------->RVE1(1)               <---------MYB59         <----------CDC5  --------->CCA1(1)<---------AHL20(2)              --------->DEAR3(2)      <---------At4g35610<---------ARR11(3)     ----------->GT1          <----------DOF2      --------->YAB1        --------->AHL20(2) ------->LBD16--------->MYB46(3)      --------->At4g35610--------->ARR11(3) -ATHB5 ---------->DOF2    <---------ALFIN1      --------->AHL20(2)   --------->YAB1 ---------->DOF2   ccccaaattgtaaagaaccaacctttgcctcactttaatgtgctgagccaatttcataatatctgaaaacaacaataaatgaagaaacaaagagacataa  19742500                                                                    <-----------RAV1(2)                                          ------->GAMYB            --------->At4g35610                                       ----------->RAV1(1)<---------ANAC58 <---------ARR14(2)                           <---------ATHB12               <---------ANAC58 --------->ARR14(2)      <-                  --------->WOX13(1) <---------ZAT18 --------->ARR14(2)<------ZmHOX2a(1)       ------   actcaaaaaacttctctgatcaatctctaatcaaaccagtgcaacagagacaacaaatttgcttaagtaagcaggagaattcgaagaattaagaagaaaa  19742600       <---------TOE2(2)       <---------TOE1(2)       --------->SPL7     --------->TOE1(2)     <---------SPL7    <---------ANAC46    <---------ANAC58    <---------ANAC58                                            <----------DOF2   <---------------AtSPL3                                   <-------MYC3   --------------->AtSPL3                                   ------->MYC3                            < --------->GLK1(1)                                 <---------TOE2(3)                                - <---------GLK1(1)                         --------->TOE2(3)<-------MYC2  <------ZmHOX2a(2)      ---- -----ZmHOX2a(1)                          --------->YAB1    ------->MYC2 --------->ARR11(3)      <--- ---->DOF2                       --------->At4g35610  --------->GLK1(2)  <---------ARR11(3)     <----   aggatttcgtacgattagacatatggaacttgatgagcttaaaatcatcaattgagattccacgttctttatcgagatcatgaactacgtcgacttcttc  19742700              <-----------GT1             --------->ZAT14     ---------->DOF2  ------>ZmHOX2a(2) <------ZmHOX2a(2)            --------->ANAC46 ---------ARR14(2)            --------->ANAC58                                            >>>>>>>>>TBF1 -------->ARR14(2)    <---------ANAC58                --------->HSFB2a(2)           <------ZmHOX2a(1) ----->HSFB2a(2)      <---------ANAC58                <---------HSFB2a(2)   <---------ANAC58 ------HSFB2a(2)      <---------ANAC46                <---------HSFC1(1)    <---------ANAC46 -----LBD16  <---------ZAT14  --------->ANAC58 --------->AHL20(2)           <---------ANAC58  -------   tggatccaaaagctgtttactgtttcgtacaaacgcaaaaacaaaacaaaaaaattcgagaaattgaaattagaagttgcttagaaggagaagaagaagt  19742800                                                                               <-----------HVH21                                                                          <---------ETT(2)                                                                          --------->ETT(2)                                                --------->LBD16          <--------P                                               <---------HSFC1(1)      --------->LBD16            --------->DAG2                     --------->HSFB2a(2)    --------->HSFB2a(2)        ----------->GT1                        <---------HSFB2a(2)    <---------HSFB2a(2)       <---------MYB46(3)                  --------->GLK1(1)         <---------LBD16   <---------YAB1  ---------->DOF2    --------->At4g35610          <-----------GT1                 <- ---->GT1  ---------->DOF2            <---------At4g35610  <------NtERF2<---------MYB52(1)      <----   gaattttgatgggtaaagttttaaagaacatttactagtgagatgaattccagaaattggcagccattttttccggtagaccgtcgagtctttggtaagg  19742900                                                              <---------AtMYB61                                                            <------MYB83                                                            <------MYB46(1)                                                           <---------DEAR3(1)                                                           --------->MYB111(1)                                                           <---------MYB46(3)                                                           --------->MYB55(2)            <---------DAG2                                                           <---------AtMYB61             <----------DOF2                                                          <--------P                    <---------ANAC58                                                          <---------MYB55(1)            <---------ANAC58                                                         <-------GAMYB  --------->ARR11(3)                                                        --------->MYB55(2) --------->WOX13(1)               *TSS                                  <----------DOF2    <---------ARR11(3)           <-----------GT1                     <---------CCA1(2)    --------->YAB1      <---------ANAC46      <----------DOF2                      <-----------HVH21<---------MYB46(3)       <---------MYB52(1)   --------->GLK1(2)                    <---------At4g35610--------->MYB111(2)  <---------CCA1(2) -----ZmHOX2a(1)   <---------ICU4       --------->At4g35610--------->MYB46(2) --------->YAB1 --ZmHOX2a(1)<---------At4g35610     <---------MYB52(1) <---------MYB46(3)------>ZmHOX2a(2)   aggagaagcttttttagctcataagttcaacatttttctgttatctgtcaaatctctttggttggtggtctcatgatctatcatatcgttgcttttttct  19743000                 ------>NtERF2               --------->ATERF1(1)          <---------TOE1(3)          <---------TOE2(3)                                                  ---------->ID1   --------->AHL20(1)                                                        <---------MYB52(1)   <---------AHL20(1)                                                       <-------GAMYB   --------->AHL20(2)                              --------->ICU4          --------->MYB52(2)   <---------AHL20(2)                           ---------->DOF2    <-----------GT1  <---------AHL20(2)                    --------->ANAC58  --------->ZAT6   <---------MYB46(3)  --------->AHL20(2)   --------->ATHB51 --------->ANAC58<-----------GT1   <-------TEIL    --------->MYB52(1)   gaaattaaatttaaggctcggcccattatcggcccaataggcaaacaaatgaaagtattaactctgatataacatgttcgttgttttttgaataacagaa  19743100                                                                                                    <                                                                                        <---------AHL20(2)                                                 --------->AHL20(1)                     --------->AHL20(2)                         --------->AHL20(2)      <---------ARR11(3)                    --------->AHL20(2)                   <---------ARR11(3)            --------->ARR11(3)  --------->YAB1 <------ZmHOX2a(1)                   --------->ARR11(3)       <---------MYB59        <---------KAN4(2)----------->GT1 <      ----------->GT1    <---------YAB1 ----------->HVH21       ----------->GT1 ---------->DOF2    --   catatagatgataaaaattgaaatcttataaatagctaagaagtgaccgaatatatcatttcgacgaggtataatcagtttcaaaaggattaaatttgag  19743200                                                               --------->ARR11(3)                                                               --------->AHL20(1)                                                               <---------ARR11(3)                                                         --------->ANAC46                                                         --------->ANAC58                    <---------TOE1(3)                    --------->ANAC58                    <---------TOE2(3)                <---------ALFIN1               --------->ATHB12                      ----------->RAV1(1)          <-----------TGA1                           --------->RAP2.6(2)        ---------->ID1                             --------->At4g35610       <-----------GT1     --------->YAB1       --------->At4g35610 ------MYB83  --------->ICU4           <----------DOF2 <---------ALFIN1 ------MYB46(1)<---------ICU4   --------->GLK1(2) --------->ANAC46                        <---------ANAC55(2) ------->MYB59<---------YAB1<---------AHL20(2)--------->YAB1   <---------AHL20(1)         --------->ANAC55(2)   tttggtttttttcgtcatgattaaggctataaaaattctagctttatatcatcagccacaccgaatatttttctctcacaagtttttgtatcatgtattg  19743300                                                                        <---------ALFIN1                                                                      <---------ALFIN1                                       <---------ANAC58               --------->AtMYB61                                       <---------ANAC58      <---------At4g35610               <-----                                       <---------ANAC46      --------->At4g35610   <---------MYB52(1)                             --------->YAB1                <---------HSFB2a(2)   <---------ANAC58                             --------->TOE2(3)             --------->HSFB2a(2)   <---------ANAC58                             --------->TOE1(3)   ---------->DOF2     --------->ANAC46   <---------MYB59   ttcaaacgcttgatcagtgattttcttctaaccataagtttgggtgttcataaaagaattttcagaagaacaccacacatttttcgtttgcctaatatac  19743400  Previous    Next  AGI:  At5g48640.1    Description:  cyclin family protein. Identical to Cyclin-C1-1 (CYCC1-1) [Arabidopsis Thaliana] (GB:Q9FJK6); similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G48630.1); similar to unknown [Populus trichocarpa] (GB:ABK96032.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Cyclin-like (InterPro:IPR011028) Range:  from: 19740759    to: 19742915    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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