Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <---------AHL20(2)                                                                                      --------->AHL20(1)                                                                                   <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                                 --------->AHL20(2)                                                                               <---------AHL20(2)                                                                               --------->AHL20(2)                                                                             --------->AHL20(2)                                                                             <---------AHL20(2)                                                                           <---------AHL20(2)                                                                           --------->AHL20(2)                                                                         <---------AHL20(2)                                                                         --------->AHL20(2)                                                                   <---------AHL20(2) <---------AHL20(1)                        --------->AHL20(2)               --------->YAB1--------->AHL20(2)  --------->AHL20(2)                     --------->LBD16                    <---------YAB1 <---------AHL20(2)  <---------AHL20(2) ---------DOF2      ----------->GT1                  <---------YAB1--------->YAB1<---------AHL20(2) -AHL20(1)   <-----------GT1            --------->ARR11(3)         --------->AHL20(2)<---------AHL20(2)   tctttttttgaatataaacaatccgaaaaaatacctagaaactatcttgtttgttttgattataaacaattatatatatatatatatatatatttattta  19718700                                                                                           ----------                                                                                         ---------->DOF2                                                                                       --------->YAB1                                                                                  --------->AHL20(2)                                                                                  <---------AHL20(1)                                                                                  <---------AHL20(2)                                                                                  --------->AHL20(1)                                                                                 --------->YAB1                                                                                <---------YAB1                                                                               --------->AHL20(1)                                                                               --------->AHL20(2)                                                                             <---------AHL20(1)                                                                             --------->AHL20(2)     <                                                                      <----------ID1--------->YAB1 --                                      --------->AHL20(2)            ---------->DOF2<---------YAB1  <-                                    <---------MYB52(1)     --------->YAB1    --------->AHL20(1)<-----                    <---------ICU4----------->GT1       --------->WOX13(1)   <---------ARR11(3)------        <---------TOE2(3)      ------->GAMYB   <------ZmHOX2a(1)   <---------AHL20(2)  <---------AHL20(2)       <-----------GT1        --------->MYB46(3)     ------->TEIL  --------->AHL20(2)  --------->AHL20(2)   gtctaaattttacgatgtttactaattgcataacaaccgttaaattagaggattgaatctatcaaaaatttaaagacaaaatattataataaaaagttta  19718800                                                                                         --------->At5g28300                                                                                         --------->DOF5.7(2)                                                                                        ----------->GT1                                                                                    --------->TGA1a                                                                                    <---------O2                                                                                    --------->O2                                                                                    <---------TGA1a                                                                                 --------->TOE2(2)  <        <---------RVE1(1)                                       --------->ARR11(3)  --------->ANAC46-     <---------TOE2(3)                                          <---------ARR11(3)  ================= ->GT1----------->GT1                    <-----------GT1        <---------AHL20(1) --------->SPL7   - ---------AHL20(2)                      --------->AHL20(2)      --------->AHL20(1)------>ZmHOX2a(1) < ------->AHL20(2)            ---------->DOF2        --------->AHL20(2)          ----------------->AGL1 --------AHL20(2)     --------->AHL20(2)<---------AHL20(2) --------->AHL20(2)   <-----------------AGL1 ----AHL20(2)         --------->YAB1--------->ICU4  --------->YAB1            <-----------GT1     <-- --->AHL20(2)    <---------YAB1----------->GT1     <---------ATHB12<---------AHL20(2)   <---------DEAR3(2)   attaaatgaggtattttttatcaataaaaaacaaagtaacaattaaacgtccaattaaaaatgaaatatttttttggttttttcctacgtcggtaactaa  19718900                                               --------->ANAC46      ---------->DOF2                      <-----------GT1 <-----------HVH21                      <---------AHL20(2) <-----------TGA1                       --------->AHL20(1) ---------bZIP60(1)                     <---------AHL20(1) -------->ANAC46                        --------->AHL20(2)                       <----------DOF2 ================bZIP_DOF          <------NtERF2                      <---------MYB59             --- -------->bZIP60(1)               --------->RAP2.6(2)      <---------YAB1     <-----------GT1    <--- ---------ANAC55(2)             --------->At4g35610  --------->AHL20(2)      --------->AHL20(2)  <--- ---------GT1                  --------->MYB52(1)--------->LBD16  ----------->HVH21    <----------DOF2   taacgtcacaaagttgatggtatttgaaagaattagcggcaatttattccccccataaattttcatttgtgacctaaaattaactttccctttctctctc  19719000                                                                                   ------>ZmHOX2a(1)                                                                                ------>ZmHOX2a(1)                                                                               <---------ALFIN1                                                                            --------->DEAR3(1)                                                                            <---------ALFIN1                                                         ------------>CBF ------->TEIL ------>LBD16          --------------------->WRI1      <----------DOF2   <---------ALFIN1        <--- ------ANAC58     ------------>CBF            <---------YAB1        <---------ARR14(2)     <---------MYB46(3) ------ANAC58   <----------DOF2 ------->TEIL <-----------GT1        --------->ARR14(2)---------->DOF2   cgtgcctcttcccattctctttcaatcttgtttgaatctccctcgattttcatttctctttcaatttcaaaattcgcacctcctcctccaaagttgttga  19719100                                                              <-----------ARR10                                                           <---------ANAC46                                                         ------>NtERF2                                                         <---------ATERF1(1)                                                         <---------DEAR4(2)                                                         <---------RAP2.3(1)                                                         <---------ERF1                                                        <---------RAP2.3(3)                                                        <---------ANAC46                                                        <---------ATERF1(2)                                                        <---------DEAR3(1)                                                        --------->DEAR3(1)                                                        --------->ATERF1(2)                                                        <---------RAP2.3(2)                                                       <---------ABI4(1)                                                       --------->RAP2.3(1)                                                       --------->DEAR4(2)                                                       <------NtERF2                                                       <---------At4g35610                                                       --------->At4g35610                                                       --------->DREB2C(1)                                                       --------->ATERF1(1)                                                      <---------RAP2.6(1)                                                      <---------RRTF1(1)                                                      <---------DEAR4(2)                                                      <---------ERF1                  --------->HSFB2a(2)                                                      ------>NtERF2                   <---------HSFB2a(2)                                                      <---------ORA47(2)             <---------LBD16                                                      <---------RAP2.3(1)          --------->GLK1(2)                                                      <---------ATERF1(1)          --------->ARR14(2)                                                     <---------RRTF1(2)            <---------ARR14(2)                                                     <---------RAP2.3(2)          <---------GLK1(1)             <---------LBD16                         <---------DEAR3(1)           --------->GLK1(1)           <---------WRKY18(1)                       <---------RAP2.3(3)        <------ZmHOX2a(1)          --------->WRKY38(1)                        <---------DREB2C(2)  --------->ZAT2          --------->WRKY12                           <---------RAP2.6(2)  <---------ZAT2          ----------->HVH21                          <---------RRTF1(3)   <---------At4g35610   *TSS   --------->ETT(2)                           --------->ATERF1(2)  --------->At4g35610   <---------ARR14(2)                               <---------ABI4(1)----------->RAV1(2)       ------   <---------GLK1(2)                   <---------At4g35610<------NtERF2   --------->ZAT14 --------->GLK1(1)   --------->ARR11(3) ----------->GT1  --------->At4g35610--------->ATERF1(1)--------->At4g35610    < ------GLK1(1) --------->LBD16      <------ZmHOX2a(1)<---------ATERF1(2)  <---------ZAT14 <---------GLK1(1)   aatcagattttgttgaccggagagtagttatttatggaggaagatgagccaatgggcggcggcgagtctgagcctgagcagaggaaatctggaactccga  19719200                                                                    --------->HSFB2a(2)                                                                    <---------HSFB2a(2)              <---------ANAC58                                  <----------DOF2              <---------ANAC58                                  ------>ZmHOX2a(1)             -------            <---------ARR11(3)                            <---------DEAR3(1)              --------->ATHB12        ---------->DOF2                 <-----------RAV1(1)<---------DEAR3(2)          <---------At4g35610 --->LBD16  --------->ARR11(3)      --------->YAB1       <------NtERF2              <-----------GT1 ----------DOF2      <---------YAB1<---------ATHB12     <-----------HVH21      <------ZmHOX2a(1) ----   gactttacataaaagagcttgtcatgagaaacttcaaatcatatgctggtgaacaacgcgtcggtcctttccacaaggttaggattttacgctgattaga  19719300        --------->HSFB2a(2)           <---------ZAT14        --------->HSFC1(1)       <---------At5g28300        <---------HSFB2a(2)     --------->YAB1 ---->ARR10                  --------->WOX13(1)           <----------DOF2 ----->CCA1(2)    <---------At4g35610 --------->ZAT14 ---------->ID1                       <---------   tttgggttttctcgaatttgagcttctatgtcaattacagtatagttttcgaatttctcgcttttgaattgcccttgcgaatttcagtttttttttcaat  19719400                               <---------------AGL15                               --------------->AGL15                      <---------YAB1                              <-----------------AGL2                  --------->ARR14(2)                              <-----------------AG                    <---------ARR14(3)                              <-----------------AGL1                  --------->ARR14(3)                              <-----------------AGL3                  <---------GLK1(2)                           --------->GLK1(1)                          --------->ARR11(3)    <--------                           <---------GLK1(1)                          <---------ARR11(3) --------->ATHB12 --GT1 ------->TEIL   <---------LBD16                           <-----------GT1   ------->TEIL-------   ttgaagatgaatttgagcatatttttcggatttctgtttttggctagtttgaattgctcttgcgaattacaagattttcatttgaatctattgattcgga  19719500                                                     ------>MYB46(1)                                                   <---------MYB59                                               <------MYB83                                               <------MYB46(1)                                             <--------P                                            <-------GAMYB                                           <---------MYB46(3)                                           --------->MYB111(2)                                           --------->MYB55(2)                                           --------->MYB52(2)                                          --------->ALFIN1                                          <---------AtMYB61                                        <---------ANAC46                                       <---------DEAR3(1)       ---------->DOF2                                      <---------LBD16------>MYB83                  <-------TEIL -LBD16<-----------GT1                <---------ZAT14--------->MYB52(1)    <---------YAB1   <-------- ---->GT1      ----------->GT1       <-----------RAV1(1)     --------->ALFIN1 <---------WOX13(1)   aaattagatttactgaattgttgaaaattcagagtttttctgcggtggttggacctaatgggagtggaaagagcaatgtgatagatgcaatgctctttgt  19719600  Previous    Next  AGI:  At5g48600.1    Description:  ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3); ATP binding. Identical to Structural maintenance of chromosomes protein 4 (SMC4) [Arabidopsis Thaliana] (GB:Q9FJL0); similar to TTN8 (TITAN8), ATP binding [Arabidopsis thaliana] (TAIR:AT3G54670.1); similar to SMC4 protein [Oryza sativa] (GB:CAD32690.1); similar to putative SMC protein [Oryza sativa (japonica cultivar-group)] (GB:AAT07581.1); similar to hypothetical protein OsI_019787 [Oryza sativa (indica cultivar-group)] (GB:EAY98554.1); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain RecF/RecN/SMC protein, N-terminal; (Int Range:  from: 19719103    to: 19726356    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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