Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->MYB46(3)       --------->ANAC58       --------->ANAC58       ------>MYB46(1)       --------->ANAC46       ------>MYB83     --------->AtMYB61     ------->GAMYB     <---------ALFIN1    <---------MYB55(2)    --------->MYB46(3)    <---------MYB111(2)       <--------ATHB1   ------>MYB83               --------->ATHB51   -------->P                 <---------ICU4   ------>MYB46(1)           <---------ATHB12                                   <---------HSFB2a(2) --------->AtMYB61       <---------ATHB12                            <---------ANAC58 -------->MYB46(3)     --------->WOX13(1)                 --------->MYB52(1)    --------->HSFC1(1) ---->YAB1           <---------ATHB12     --------->WOX13(1)         <---------ANAC58            ---- ----ATHB12        --------->WOX13(1)  ------->TEIL       <-----------GT1       --------->HSFB2a(2) ->WOX13(1) <---------ATHB12 <---------ATHB51--------->YAB1     --------->WRKY18(1)              ----   aaaccaaccacccaattaagtcaatcaatcaataattcatgaaccaattagaattctagttaaccggtctagcttacatgttctcgaatttgattcaaac  19691200                                                                        <---------AHL20(2)                                                                       --------->ARR11(3)                                                                       <---------ARR11(3)                                           --------->TOE2(3)           <---------AHL20(1)                         <-----------------AG                          --------->AHL20(2)                      --------->AHL20(2) --------->ARR11(3)            <---------AHL20(2)                      <---------AHL20(2) <---------ARR11(3)            --------->AHL20(1)     -------                     --------->AHL20(2) --------->CCA1(1)             --------->AHL20(2)  --------->AHL20(2)           <---------TOE2(3) <---------ARR14(2)                 --------->At5g28300   <---------YAB1         <---------AHL20(2)  --------->ARR14(2)                ----------->GT1      --------->YAB1        --------->AHL20(2)   <---------GLK1(2)              ----------->RAV1(1) <---------AHL20(2) ----->TOE2(3) --------->ANAC58         --------->RVE1(1)  --------->MYB46(3)  --------->AHL20(2) ----->TOE1(3) --------->ANAC58  ----------->GT1         --------->ANAC46   --------->YAB1--------->YAB1   tttaaacagatttaatgaagcaatttaaacagatttggaaaaaaatctcaaaactattcaaaccacagtaaaatatatttataaaatcacaattaaaaat  19691300                                                                      <----------DOF2                                                                ------>ZmHOX2a(1)                   <---------ZAT2                             ----------->RAV1(2)                   --------->ZAT2                           --------->ARR11(3)                  <----           <---------MYB52(2)      --------->YAB1           <---------ARR11(3)                -------     --------->WOX13(1)         ------->TEIL                --------->ARR14(2)         <----------DOF2     --------->YAB1<---------STY1(2)       <-----------GT1  <---------ARR14(2)   <---------AHL20(2)  --------->TOE2(3)--------->STY1(2) <---------YAB1        --------->CCA1(1)     --------->AHL20(2) -->AHL20(2)   --------->ZAT2--------->AtLEC2              --------->RVE1(1)    --------->AHL20(2)   atagcattaatcaactaagctagctagcgccatgcacttataattttacagagtttctaaaatatcctgactcttttttaaaattaatactttgttaaca  19691400                                                                                 --------->ANAC58                                                                                 --------->ANAC46                                                                                 --------->ANAC58                                    ----------->GT1                       <----------DOF2           <                            <-----------HVH21                          ------>ZmHOX2a(2)            <                          <-------MYC3            ------------>CBF    <------ZmHOX2a(2)             -                          ------->MYC3      <---------AHL20(2)       --------->ARR14(2)             -                         <---------ANAC58   --------->AHL20(2)       --------->ARR11(3)            --                         <---------ANAC58  --------->AHL20(2)        <---------ARR11(3)       ------- -----ICU4               <---------ANAC55(2)--------->AHL20(1)       <---------ARR14(2) ---------->DOF2 ----->CBF              ------------------------>ANAC81      <--------ATHB1     <---------LBD16    <-   atgaccaagtctaaaacttatctaaaaacgtgtcaaataagaaaaaaaaattagcaatttgaataattcaagatccctttaactcggaactaaagaaggt  19691500      <---------AHL20(2)                         --------->AHL20(2)      --------->AHL20(2)                       ----------->TBP  <---------YAB1                       --------->ARR14(2) ---------AHL20(2)                     <---------ARR11(3) ---------ICU4                         --------->ARR11(3) <-----------GT1 -------->AHL20(2)              <---------ARR11(3)     --------->ANAC46 -------->ATHB51     <---------ANAC46 <---------CCA1(2)--------->ANAC55(2) ------->ICU4 --------->CCA1(2) --------->ARR11(3)    <-------TEIL                               <--- ---->GT1    --------->ARR11(3) --------->GLK1(2)----------->TBP                                 ---- --------YAB1<---------ARR11(3)--------->RVE1(1) <---------AHL20(2)  <----------DOF2   ------------>CBF   aattatttttaaatagatatgttctgtgtgaaaaaatctaatatcttctatatatatacataacctttcttcttttcagttttaaaaccatcaattcatt  19691600                                                                                                    <                                                                                                    -                                                                                                   --                                                                                                  <--         ------>ZmHOX2a(2)        <-----------HVH21                                              ----         <---------MYB46(3)      ------->GAMYB                                                   <---  <---------ICU4               <---------At4g35610   <---------AHL20(2)                          ----  --------->YAB1               --------->At4g35610 <---------YAB1                                <--- <---------ATHB12      <---------ARR11(3)       <---------YAB1              <--------P          ----- ------AHL20(2)        --------->GLK1(2)<-----------GT1                   <------MYB46(1)       ----- ----->AHL20(2)        --------->ARR11(3)<---------At5g28300              <------MYB83    --------->YAB1   ttaatcatcgatcggtgatgaagaaaatctttcaactgtcatttactgtttttattattttcatcagtcttgtgctaggttagtctatacatttagaatt  19691700     --------->ARR11(3)     --------->AHL20(2)     --------->AHL20(1)     <---------AHL20(1)     <---------ARR11(3)     <---------AHL20(2)  <---------AHL20(2)  --------->AHL20(2) ---------AHL20(2) -------->AHL20(2)             --------->MYB52(1) ------->YAB1                --------->MYB46(3)        -------->ATHB1 -------YAB1  <---------ARR14(2)                       --------->YAB1 ----->AHL20(1)              <---------MYB52(2)        --------->ATHB51 ------AHL20(2)           --------->REM1(1)           <---------YAB1                        --------- ----->AHL20(2)         --------->HSFB2a(2)    --------->YAB1                       ----------->GT1 ------AHL20(1)         <---------HSFB2a(2)   <---------YAB1                        <---------ANAC55(2) ---->AHL20(2)--------->ARR14(2)            <---------GLK1(1)             --------->ZAT6   <---------YAB1 ---->YAB1 <---------ANAC55(2)------->GAMYB --------->GLK1(1)     --------->TOE2(3)--------->MYB59   atattaatatattacatatactcgttctacaacaaactgattttggatatcatactattattgtataacatcagttacactaagttatgtaaaattatag  19691800                            --------->YAB1                                     <---------YAB1                           <---------YAB1                                     --------->AHL20(1)                  <-----------GT1                                             <---------AHL20(2)              --------->AHL20(2)                                              <---------AHL20(1)              <---------AHL20(2)                                              --------->AHL20(2)             --------->AHL20(2)   <-----------GT1                            --------->YAB1       --------->ZAT6     --------->ARR11(3)                                <---------YAB1 >YAB1 <-----------GT1    <---------ARR11(3)                          ---------->DOF2     <---------AHL20(2)   caagagttttcactataaaattacacaatatcatatttagcattcttatgtctgtttcacaaaaaaaaaaaaaaaagcattataatgtctaattcatttt  19691900                                                                                                 ----                                                                                                <----                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                          <---------AHL20(2)                                                                                          <---------YAB1                                                                                         --------->AHL20(2)                                                                                         <---------AHL20(2)                                                                                       <---------YAB1                                                                                      --------->AHL20(1)                                                                                     --------->ATHB51                                                                                     --------->AHL20(2)                                                                                     <---------AHL20(2)                                                                                     <---------ICU4                                                                              ----------->GT1<-------                                                                       --------------->AGL15 --------                                                                      <-----------------AGL1 <-------                       <---------MYB59                                <-----------------AG--------->AHL20(2)                 <---------ANAC58                       --------->AHL20(2)   <---------TOE2(3)-------                 <---------ANAC58            ------->TEIL        <-----------GT1    --------->ICU4<--   agatttagacaattgagttgctagacctaaaaaccaatttcgaaatgtatatgaaaaataaaacaaatttccacctattttggttaattattttaattat  19692000    <-------TEIL ----->AHL20(2) -----YAB1 ->HAHB4 ---AHL20(2)                                         --------->ARR14(2) --HAHB4                                             <---------ARR14(2) ---ICU4                                       --------->ANAC58 -->ATHB51                                     --------->ANAC46 ->ATHB1                                       --------->ANAC58                            <---------ANAC58 --ATHB51     --------->AHL20(1)              <---------LBD16                              <---------ANAC58 ->ICU4       <---------AHL20(1)         --------->AHL20(2)                                --------->MYB52(2) --YAB1       --------->ARR11(3)       <---------AHL20(2)        <---------AHL20(2)       <-------TEIL -->YAB1  ------>ZmHOX2a(1)        <---------ZAT6   <----------TaMYB80             <----------DOF2 -------AHL20(2)             <---------YAB1  <-----------GT1<---------MYB52(1) <---------GLK1(2)   taaaaattcgtcctgatatattgtaagagttattgtagtataaatttatacggcatatttcccttgttttatttcatcttcgattctttatgttcgtggt  19692100  Previous    Next  AGI:  At5g48543.1    Description:  LCR1 (Low-molecular-weight cysteine-rich 1). Identical to Low-molecular-weight cysteine-rich protein LCR1 precursor (LCR1) [Arabidopsis Thaliana] (GB:P82716); similar to LCR9 (Low-molecular-weight cysteine-rich 9) [Arabidopsis thaliana] (TAIR:AT2G27145.1); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat (InterPro:IPR010851) Range:  from: 19691618    to: 19692518    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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