Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->AHL20(2)                                                    --------->AHL20(2)                                              --------->ANAC58                                              --------->ANAC58                                          ------>ZmHOX2a(1)                                      <---------ARR14(2)                                      <---------ARR11(3)             <----------DOF2                                      --------->ARR14(2)       --------->YAB1       ------->GAMYB   ----------->RAV1(1)                --------->ARR11(3)  --------->AHL20(2)    --------->MYB46(3)   tacagcaacaaaatcaagggttctcttcgatgagcatcaaaatcctgtaagcaaataaaaaaaaatcaaaactttattagcaacaacgaaaattggatta  19623900                                          --------->WRKY12                                <---------YAB1                                                      <            ---------->DOF2 <----------DOF2                                                  --------         --------->YAB1    ------>ZmHOX2a(2)                                  -----------------------   <------NtERF2          <------ZmHOX2a(2)                        --------->MYB52(1)        --------   <---------At4g35610   --------->ARR11(3)                      <---------MYB52(2)        --------->MYB52(1)  ------>NtERF2          <---------ARR11(3)                   --------->MYB46(3)--------->YAB1 ------ --------->DEAR3(1)---------->DOF2    <---------TOE2(3)  <-----------GT1  --------->YAB1--------->ANAC46   tcgccagcgaatcaaaaagactaaagcgatctttaaaattgaagttgacttagaaaaatttacaacaacttacgaatcaaaatcagaaacacaaaacgaa  19624000                                    <---------ZAT18                                <---------DEAR3(1)                                --------->ALFIN1                             <---------AtMYB61                             --------->ALFIN1       --------------------->WRI1<---------MYB46(3)       <----------DOF2       <---------DEAR3(1)  <---------AtMYB61       --------->ALFIN1 ----------DOF2         <---------ANAC58                                                 ----------->RAV1(2) ->ANAC58               <---------ANAC58                                                 --------->At4g35610 ->ANAC81               <---------ANAC46                                  <------ZmHOX2a(1)<--------- ->ANAC58          <-------GAMYB<---------AtMYB61                 <---------ATHB12       <---------At4g35610 ---->DOF2       <------NtERF2<---------MYB46(3)            --------->ZAT18   ----------->GT1   agctttggtctttgtagtcgtcgttgtcgtggtggtggtgctcttgttcataagtgttgaagagcacaatgaagaaggagaagaaaatcgcatctgtggc  19624100                        --------->YAB1                       <---------YAB1                       --------->ICU4                    <---------YAB1                  --------->YAB1                 --------->ICU4                 <---------YAB1                      --------->AHL20(2)               --------->YAB1                        <---------AHL20(2)           --------->WRKY38(1)               <XXXXXXXXXXXXXXXXXXXXMIR414          <---------AHL20(2)            <---------ZAT14              <---------YAB1                        <---------AHL20(1)            --------->WRKY12              --------->ICU4                        --------->AHL20(2)            ----------->HVH21            --------->YAB1--------->ICU4            --------->AHL20(1)            --------->ZAT18<---        XXXXXXXXXXXXXXXXXXXX>MIR419              --------->ATHB51               <-------GAMYB    ----       <---------YAB1--------->YAB1             --------->ICU4                  <---------At4g35610  <---------MYB46(3)--------->ICU4---------->DOF2--------->AHL20(2)  <----------DOF2        <-------- --RAV1(1) --------->ICU4 <---------YAB1 --------->ALFIN1---------->DOF2        --------->At4g35610--   taagtggttatgaatgatgatgatgatgatgatgaagaaaggagttgggaataatttaataaaggagtcgtctttgtgagtgagttgactgggactttgg  19624200     <---------DEAR3(1)                                            --------->ANAC46    <------NtERF2      <---------ANAC58                            --------->ANAC58  <---------DEAR3(1)   <---------ANAC58                            --------->ANAC58         <-------- ------ARR14(2)        <---------ANAC46    ---------->DOF2   <---------YAB1                 --------- ----->ARR14(2)<---------ZAT6         ---------->DOF2     --------->ICU4             *TSS  ------>MYB46(1) --DOF2<------NtERF2  <-------TEIL<----------ID1          <---------YAB1        ----------->RAV1(1)<- ---->ZmHOX2a(2) ---------->DOF2--------->ALFIN1        --------->YAB1  <---------ATHB12   ------>MYB83   atcgtcgtcgtcgtctagtgaaagttcgtgaagaatggggcaaagaaaagagagacactgatgatgagaacgcaatgactcccaacaaaaaccaaatcgg  19624300      <----------DOF2     ----------->GT1    --------->LBD16                                              --------->ARR11(3)   <---------ANAC58                                              <---------ARR11(3)   <---------ANAC46               <----------DOF2              <---------AHL20(2)   <---------ANAC58               <---------DAG2    --------->YAB1         <<<<<<<<<MYB98 -ARR14(2)               <----------DOF2  <----------DOF2   --------->AHL20(1) >ARR14(2)               <------------------------ANAC81    <---------AHL20(1) <------ZmHOX2a(1) ---------DOF2        <-----------GT1  <-----------GT1<---------YAB1     <---------MYB46(3)   tctttgcgcgttaaatgttttttttttctttcttctctttttgacttttcaacatcatcatatatattatcttgtttgttaggagatggacaaatttttc  19624400                 <---------DAG2              <---------RVE1(1)              ------>MYB46(1)             ---------->ID1                  <---------CCA1(1)              ------>MYB83            <-----------GT1                 <---------ARR11(3)            <---------MYB59     <------MYB46(1)                     <---------HSFB2a(2)           <-----------GT1    ---------->TaMYB80     <------MYB83<----------DOF2         --------->HSFB2a(2)    ---------->ID1<---------ATHB12  <---------MYB52(1)                    <---------LBD16       <---------AtMYB61 ---------->DOF2   ttccatttggtatttttcgcttttcattcgtttttagataattctggatattttgtaaatggttttggtgttttgaccaaatcaaagaatggaatatgac  19624500                                                                                         <---------AHL20(2)                                                   <---------ICU4                  --------->ANAC55(2)                                                   --------->AHL20(2)          <-----------HVH21-----                                                   <--------ATHB1             --------->bZIP60(1)               <---------ANAC58                    <---------AHL20(2)         <---------bZIP60(1)<---               <---------ANAC58                    --------->ATHB51       <---------ARR11(3)   ------    --------->ANAC58                              --------->ICU4          --------->ARR11(3)   <-----    --------->ANAC46                              <---------YAB1     --------->AHL20(2)  --------->AHL20(2)    --------->ANAC58                            --------->YAB1    --------->DAG2   <---------ANAC55(2)   atttacaagaaatgttttcttggtattagtttttgacaaataccaatgcataataatttgtatcacaaaaattgaatatcatgtcacatatttaaatact  19624600                                                                           <---------AHL20(2)                                                                       --------->AHL20(2)                                                                       <---------AHL20(2)                                                                     --------->AHL20(2)                                                     <-------GAMYB --------->AHL20(2)                                                    ----------->GT1<---------AHL20(2)      <---------------AtSPL8                  <---------ANAC58   --------->AHL20(2)      --------------->AtSPL3            <---------ATHB51       <---------AHL20(2)      --------------->AtSPL8            <---------AHL20(2)   --------->AHL20(2)      <---------------AtSPL3        --------->AHL20(2)       <---------AHL20(2)   <------ZmHOX2a(1)                <---------AHL20(2)     --------->AHL20(2)     <---------ANAC58 ---->ICU4                        <----------DOF2------------>AtMYB77<---------AHL20(2)            <- ------ICU4 --------->ICU4    <---------GLK1(2) ----------->HVH21<---------AHL20(2)              ---- --->ANAC55(2)          <---------MYB46(3)    <---------ANAC58 --------->AHL20(2) <---------ANAC58<-- ----ANAC55(2)    <-----------RAV1(1)--------->AHL20(2)    <---------AHL20(2) ---------->DOF2 <------   tattaggagtagtacttattttgttgttgttggaatctttaaattatgggttgacagttatatatatatatatatatataaaaagcttgttcatttagca  19624700            ------->GAMYB            <---------ALFIN1           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <---------MYB55(2)           --------->MYB46(3)          ------>MYB83          -------->P          ------>MYB46(1)         ------>NtERF2        --------->DEAR3(1)      ------>NtERF2      --------->LBD16     --------->ANAC46     --------->ANAC58                --------->TOE2(3)     --------->ANAC58       --------->ANAC46    <---------LBD16         --------->ANAC58    --------->MYB46(3)      --------->ANAC58  ------->TEIL            <---------ALFIN1                                                          x --------REM1(1)         --------->MYB46(3) <---------ANAC58             --------->YAB1             - ----->At4g35610     --------->At4g35610    <---------ANAC46           <-----------GT1       <------- ---------ARR10      <---------At4g35610    <---------ANAC58        ----------->GT1     xxxxxxxxxxxxx ---At4g35610     <-------TEIL      ----------->GT1    --------->ANAC55(2)  --------->MYB52(1)      x   gatgtacccgccaaccacggttcagcaaacaccccaaaatgttaattcgtgttgtttatgtattgtcagtttgtaacataacgattttagaaattttaca  19624800  Previous    Next  AGI:  At5g48380.1    Description:  leucine-rich repeat family protein / protein kinase family protein. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G27190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23320.1); similar to hypothetical protein OsI_019285 [Oryza sativa (indica cultivar-group)] (GB:EAY98052.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63265.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro do Range:  from: 19621315    to: 19624285    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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