Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   --                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                              -------                                                                     <---------ZAT2           -------  <---------At4g35610                                                --------->ZAT2           -------  --------->At4g35610                                                --------->At4g35610      <------ --->AHL20(2)                                                  <---------ZAT18                <------ ----AHL20(2)                      --------->TOE1(3)           --------->ZAT18                ------- ---YAB1 <---------ARR11(3)    --------->DOF5.7(2)            --------->DOF5.7(2)             <------ >YAB1   --------->ARR11(3)    <---------MYB52(1)          <------NtERF2                     <------- >AHL20(2)          <----------ID1 --------->TOE2(3)     <---------DEAR3(1)                  <-------   attaagctcaatatctcaaaatgagacaaaatcgttaccttagaactcagagtatgtggtcgtcgttcactagctggagttgaattcttcaatgcgaatc  19597200 -------->LBD16 ------->ANAC46 --->GLK1(1) ----GLK1(1) --->HSFB2a(1) ----HSFB2a(1) --->TaMYB80                               --------->ARR14(2) >TEIL                                     <---------ARR14(2) -->GLK1(2)                             --------->ANAC58 -----ARR10                             --------->ANAC46                 <---------ICU4 ---ARR11(1)                            --------->ANAC58   --------->GLK1(2) -->ARR14(2)                      --------->YAB1          <---------ARR14(2)                  <------ ---ARR14(2)         ----------->HVH21--------->MYB52(1)  <---------GLK1(2)                   ------- --CCA1(2)      --------->GLK1(2)<-------TEIL             --------->ARR14(2)   ------>ZmHOX2a(1) --ARR14(1) <-----------GT1----------------------->TaNAC69(2)  <---------CCA1(2)     <---------AHL20(2)   tccgaagctctaattcacaatctgtgactcttcgattcataaacggaacttcaattctcagattcttatctttcaacattcctctattcaatttcgaatt  19597300          ------>MYB83          ------>MYB46(1)        <---------MYB46(2)        --------->MYB46(3)     <-----------GT1                   --------->WOX13(1)    ---------->ARF1            <---------O2                                                      <---   <-----------HVH21      --------->YAB1 <---------ATHB12                            <-----------GT1 ---ARR14(2)       <<<<<<<<<TBF1<-----------TGA1       ------>ZmHOX2a(1)             --------->YAB1 -->ARR14(2)<---------ALFIN1   --------->O2      <<<<<<<<<TBF1               --------->YAB1      ----   cgacttgtcaccaaacacttcttcttcatcgtaacgtctcccaatcacttcttcttcctcttcatcttcaacatcgtaatcagagaataacaattcgttt  19597400              <---------ARR14(2)              --------->ARR14(2)           --------->ANAC46        --------->ARR14(2)        <---------ARR14(2)                                                         ----------->HVH21       --------->GLK1(1)                                                   --------->ARR14(2)       <---------GLK1(1)                                                   <---------ARR14(2)      <---------MYB52(1)                             --------->TOE2(3)    <------ZmHOX2a(1)     --------->LBD16                             <---------ICU4       <---------TOE1(1)   <---------LBD16                              <---------YAB1        <---------TOE2(1) --------------AGL1<---------ARR14(2)         --------->YAB1          <---------ANAC46             <- ------------->AGL1--------->ARR14(2)        <-------TEIL           --------->CCA1(2)              <-   ccttctccggtatccgaaaccgattcgatactcatgttatcgtttgattcatcatcgttaagagttggagttacgaggattggcgatgacaggtttgagt  19597500                                                      <---------AGP1                                                      <---------ARR14(2)                                                      --------->AGP1                                                      <---------ARR14(3)                                                     --------->GLK1(1)                                         <---------HSFB2a(2)                                         --------->HSFB2a(2)                                         <---------LBD16                                      --------->GLK1(2)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     --------->ARR14(2)   --------->At4g35610                                     <---------GLK1(2)<---------ARR11(3)                                     --------->ARR11(3)  ----------->HVH21                                     <---------ARR11(3) ------>ZmHOX2a(2)                                     <---------ARR14(2)<------ZmHOX2a(2)                                    <---------HSFB2a(1)--------->CCA1(2)                                    --------->HSFB2a(1)<---------At4g35610                                    <---------HSFC1(2)--------->ARR14(2)                                 =============================HOX2a_HOX2a                                 ==============================HOX2a_HOX2a                                 <------ZmHOX2a(1)   <---------GLK1(1)                              ================================HOX2a_HOX2a                              =================================HOX2a_HOX2a                         <-              ----------->GT1 <------ZmHOX2a(1)  --------->ALFIN1   <---------MYB46(3)             -- --------ANAC58      --------->DAG2 --------->HSFC1(2)--------->ARR11(3)                           -- --------ANAC58    ---------->DOF2 ----------->ARR10----------->ARR10<-------GAMYB                 <-   ttcgtttcagtggagattgtgaaaaggtagaaggaggaagattctcggagagtggagatctgatgcgaggtcgttgaagttgagccatggagttttttct  19597600                                                           --------->HSFB2a(2)                        <---------ZAT2                     <---------HSFB2a(2)--------->MYB46(3)                        --------->ZAT2            <---------DEAR3(1)        --------->MYB52(1)   <------MYB83<---------ANAC58                   <---------RAP2.6(2) <---------ICU4   <------MYB46(1)      --------->At4g35610      <---------At4g35610  --------->MYB52(1)   <---------MYB46(3)   <---------At4g35610      --------->At4g35610 <---------ATHB51 --------At4g35610   <------ZmHOX2a(1)          --------->ALFIN1    --------->AHL20(1) ------->ZAT2  <---------ANAC58                <------ZmHOX2a(1)   --------->YAB1 ------->At4g35610 <---------TOE2(3)  ---------->DOF2 <----------DOF2<---------AHL20(2)       <------ --------ZAT2<---------YAB1   ---------->DOF2--------->ALFIN1    --------->AHL20(2)     ----------->HVH21   cagcttggttcgataatgcttgaggaagctgagaaagagagaaaggagaggagcggctgttttggaaaaaaataatggcaacggctagttttgacactgt  19597700                                               <---------AHL20(2)                                               <---------AHL20(1)                                               --------->AHL20(2)                        <---------YAB1                                          <---------AHL20(2)                           <---------AHL20(2)                                          --------->AHL20(1)                           --------->AHL20(2)                     --------->ARR14(2)   <---------AHL20(1)                          <---------AHL20(2)                     <---------ARR14(2)<---------AHL20(2)                             --------->AHL20(2)            --------->ATHB12     ------------>CBF                                     <---------AHL20(1)            --------->ATHB51     --------->LBD16                                   <---------AHL20(2)            -------->ATHB1      --------->ANAC55(2)                                --------->AHL20(2)           <---------YAB1       --------->ANAC46                                  <---------AHL20(2)       <---------ANAC46        <---------LBD16<---------AHL20(2)                  --------->AHL20(2)       <---------ANAC58  <---------DAG2--------->AHL20(2)                         <---------AHL20(1)       <---------ANAC58  <----------DOF2  --------->AHL20(2)                  --------->ICU4      ---------->ID1<------ZmHOX2a(1) <---------AHL20(1)                 <---------bZIP60(1)   <----------DOF2<---------TOE1(3)   --------->AHL20(2)                 --------->bZIP60(1)    <----   <---------DAG2 <---------TOE2(3)   <---------AHL20(2)    <----------DOF2  ------------>CBF  ------ -----RAV1(1)<------------CBF<-----------GT1  --------->AHL20(2)       --------->ZAT14--------->AHL20(1)   tgccacttttcgtattattgaaggatacttttttccgcaattaatttattaaattttgaagacttttaaacactgttgtcacaattaatttatttttgtc  19597800                                                            <---------RAP2.6(3)                                                   <---------AHL20(2)                                                   <---------AHL20(1)                                             <---------GLK1(2)                                  --------->AHL20(1)        <---------SPL7              <---------AHL20(2)           --------->ANAC58       --------->AHL20(2)       <---------ANAC46            <---------YAB1  <---------YAB1             <------ZmHOX2a(1)   <---------YAB1                       <---------AHL20(2) -----ANAC46 <------ZmHOX2a(1)    <---------AHL20(1)<---------YAB1         ----------->GT1 ---->ID1  --------->ANAC58<---------TOE2(3)<---------At4g35610          <------------CBF   gtttattattcacaaggacttgaactcttgaggaaatattttagtcagattattatttttgccgtaagaaaacaaaattgtgacatatttttatttagct  19597900                 <---------------AtSPL8          --------->YAB1                                                                        -----         <---------YAB1       <---------ANAC58                                 --------->YAB1--------         <---------AHL20(2)   <---------ANAC58                    ---------->DOF2            <-------      ------->TEIL----------->GT1                     <----------DOF2    --------->GLK1(2)  <--------   atggtatgtatattatagtattgtacaaattgtcttgttttcttacaaagtttaaacttttggttatctaaagaaattctataaacatctaaattcaaaa  19598000                                                    --------->AHL20(2)                                                    <---------AHL20(1)                                                    <---------AHL20(2)                                                    --------->AHL20(1)                                                   --------->YAB1                                                   <---------AHL20(2)                                                   --------->AHL20(2)                                                  <---------YAB1                  --------->AHL20(2)            --------->YAB1                  <---------AHL20(2)           <---------YAB1                 <---------AHL20(2)            --------->AHL20(2)         --------->YAB1                        <---------AHL20(2)       ----------->GT1        <---------YAB1                     --------->YAB1             <---------ANAC58      <---------ICU4    <---------YAB1    <---------YAB1         ----------->GT1      --------->YAB1  --------->AHL20(2)--------->YAB1          --------->DAG2     --------->ICU4   <---------AHL20(2)<---------ICU4          --------->MYB59     <---------ATHB51<---------AHL20(2)--------->ICU4           <---------TOE1(3)                  -- ---->DAG2   <---------AHL20(2)     --------->AHL20(2)          <---------TOE2(3)               ----- ------->AGL15   --------->AHL20(1) --------->AHL20(1)      --------->YAB1        <----------DOF2 --- --------AGL15   <---------AHL20(1) <---------AHL20(2)   <---------AHL20(2)<-----------GT1    ------- ---------AGL3   --------->AHL20(2)--------->AHL20(2)<---------YAB1   <---------ANAC58       <-------   attggaaattatgatataatttatttatttttgtcaaaaaaattatgatataattatattaaaaataaggtaacttgttacattctttatttcaaatcaa  19598100  Previous    Next  AGI:  At5g48310.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24610.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65440.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ82245.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ70121.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41110.1); contains InterPro domain C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973) Range:  from: 19592085    to: 19597588    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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