Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <---------ARR11(3)                                                                            --------->GLK1(2)                                                                            --------->ARR11(3)                                                                           --------->RVE1(1)    <-----------GT1                                                        xxxxxxxxxxxxxxxx>smallRNA(i) ------>ATHB51                                                         --------->YAB1 ------>AHL20(2)                                                       --------->AHL20(2) ------YAB1                                                        --------->AHL20(2) ----->ICU4                                                        <---------AHL20(2) ----ICU4                                                         --------->AHL20(2)            <---- --->YAB1                                 --------->AHL20(2)   --------->AHL20(2)               <---- ---HAHB4                          <---------YAB1              <---------AHL20(2)               ----- -->ATHB1                        <-----------GT1              <---------AHL20(2)              <------ -->ICU4                        <<<<<<<<<MYB98                --------->AHL20(2)              ------- ---ATHB12                --------->AHL20(2)                  <---------AHL20(1)        <----------DOF2 >WOX13(1)            --------->AHL20(2)  <---------AHL20(2)  --------->AHL20(1)   ---------->DOF2---   ttatttataccagttttaaaaaaactaaatatatgttactattttttaatataacacacactaatttatttaataaaaaatctataaaagctttcgcccg  19562100        --------->LBD16       <---------ANAC46      --------->LBD16      <---------LBD16  --------->ARR14(2)  <---------ARR14(2)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                          <---- --NtERF2                                                                                      <----- -----LBD16                                                                <---------------AGL15<---- ---->LBD16                                     --------->AHL20(2)         --------------->AGL15----- ---LBD16                                       <---------AHL20(2)--------->DAG2        <-----------GT1 -->DEAR3(1)       ------>ZmHOX2a(1)           --------->AHL20(2)---------->DOF2  ----------->GT1---- ------>LBD16   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->YAB1   cgggaaaccgcgggtttaatcctagtagtatagaataagactcaacaaatttaaaaaaaaaaaaaaaaaaagtcaaactatattttgtaataactcttcc  19562200                                ------>ZmHOX2a(2)                               --------->GLK1(1)                               <------ZmHOX2a(2)                                                -----                              --------->AGP1                                                   ------                              <---------AGP1                                                   <-----                              <---------ARR11(3)                                               ------     <-------TEIL             --------->ARR11(3)              <---------ANAC55(2)              <----- -----ANAC46                  <---------ARR14(2)              --------->ANAC55(2) <------------CBF ----LBD16                    --------->ARR14(2)             --------------->AtSPL3     <------ZmHOX2a(1) -----HSFB2a(2)              <---------At4g35610       ----------->GT1    <----------DOF2      ------ ---->HSFB2a(2)              <---------CCA1(2)       <---------ANAC46   ------->TEIL    ============= ----->LBD16         --------->AHL20(2)         <-----------GT1       <---------ZAT18 <---------TOE2(3)   ggataaatacatgttcttgcacattaatttcagatctctaatcgtgtttttaacgacttgtaatacgtactatgcactttgagtaattgaggaacaagat  19562300                                <---------ANAC58                                <---------DEAR3(1)                                <---------ANAC46                                <---------DEAR4(1)                                <---------RAP2.6(2)                                <---------DREB2C(2)                   <---------ANAC58                   <---------ANAC46 --------->ABI4(2)                   <---------ANAC58 <---------MYB46(3)                 ------>ZmHOX2a(2) <---------AtMYB61                <---------GLK1(1)  --------->ALFIN1            --------->ALFIN1    <---------ANAC58          <---------ANAC46     <------NtERF2<---------YAB1          --------->ALFIN1  ------->MYC3  <---------CCA1(2)       --------->ANAC46     <-------MYC3<---------ANAC58      <---------LBD16      <---------O2 <---------ANAC58 ---->CCA1(2)  <---------ARR14(2) <---------ABI4(1) --->ARR11(1)  --------->ARR11(3) <-------GAMYB ----ARR14(2)  <---------ARR11(3) <------NtERF2                                           <---------- --->ARR11(3)  --------->ARR14(2)<---------MYB46(3)                         ------->MYC3 --------->ATHB51 ----ARR11(3)  <---------AGP1--------->ALFIN1 <----------DOF2               <-------MYC3 --------->ATHB12 --->ARR14(2) <---------CCA1(2)<---------ABI4(1)                       <-----------HVH21<---------YAB1 =======================HOX2a_HOX2a<---------DEAR3(1)         <---------At4g35610  <----------DOF2   atgatgtccacggtgtggatctcgtgtaaacgtggcggtggtgcttatctttatgtcatttttcatcagagggggtcacatgcgacttttattattgaga  19562400                                                 ---------->DOF2                                   --                                             ------------------------>ANAC81     ------->TEIL      --                                           ---------->DOF2          ---------->DOF2         <--------                  ---------->DOF2      --------->TOE1(3)          <------ZmHOX2a(1)--------->REM1(2)     --------->MYB52(1)<----------DOF2----------->GT1     ---------->DOF2       <---------AtLEC2----- --CBF        ----------->RAV1(1)  ---------->DOF2   ------------------------>ANAC81 <---------ETT(2)   gaaaaaaaaacagagacaacaaaagctttctgacaaaaaaagcttaaaagtaaaagaagaaaaagagaggaaaagaaggaatgcatgtagacaatgtcag  19562500      ----------->GT1             <------MYB83  --------->GLK1(2)--------->ANAC58  --------->ARR14(2)      <---------YAB1  <---------ARR14(2)  ----------->RAV1(1)         --------------->AGL15 <---------GLK1(2) --------->ANAC46              ----------------->AGL2          --------->ANAC46 ------->ANAC58    --------->ANAC58             ------>NtERF2             --------->TOE2(3) ------->ANAC58    --------->AtLEC2            <----------ID1        --------->YAB1<---------ATHB12 ---HVH21   <---------KAN4(1)------->TEIL>>>>>>>>>EIN3          <-------TEIL <-----------GT1 ---->At4g35610   --------->LBD16 <------MYB46(1)----------------->AGL3   <----------DOF2   caagaatctggtgaataatccaggcaacatgaatgtaggttatacattggggccaaatttagcagtttcatttatactttaacccatcactctaaaaaaa  19562600                                                                                  --------->ANAC58                                      <----------DOF2                             --------->ANAC58                                   --------->ARR11(3)                     --------->ATHB12                                   <---------ARR11(1)                    --------->ICU4                    <---------At4g35610                                  <---------YAB1                    --------->At4g35610      <----------DOF2           <---------bZIP60(1)            <<<<<<<<<<GT-3b       <---------CCA1(2)                    --------->bZIP60(1)   cattttgttgatatttttcttcagcatcaaactctcaaatctttaggcttttagttttatgtcttatgcattgacatcattgacaagttagaagagaaca  19562700                                                   <---------ANAC46                                                   <------MYB46(1)                                                   <------MYB83                                                  --------->MYB46(2)                     <-----------GT1              --------->MYB111(2)                    <---------CCA1(2)             <---------AtMYB61             <------MYB83             <---------ANAC58   --------->GLK1(1)   <---------AHL20(2)             <------MYB46(1)          <---------ANAC46   <---------GLK1(1)  <---------YAB1            --------->MYB59           <---------ANAC58  >>>>>>>>>>GATA-1 --------->AHL20(2)        <-            <---------TOE2(3) --------->ANAC58    --------->MYB55(2)     <---------AHL20(1)       <--        <---------AHL20(2)    --------->ANAC58    <---------MYB46(3)     --------->AHL20(1)   -------        --------->ATHB12<---------------AGL15     --------->MYB111(1)    <---------AHL20(2)  <-------       <---------AHL20(2)     --------->ANAC46<---------YAB1    --------->YAB1         --------->AHL20(2)       --------->AHL20(2) --------->AtLEC2   <---------TOE2(3) <---------ATHB12        <---------AHL20(2)   gttgtattatttattaggttttatatccattcaaggcatggcttatttatgtttggtggatttcaatgactatattttattatttgtttttaaatgaacc  19562800                                                          ---------->DOF2                                                        <---------------AGL15                                             <---------LBD16                                            <---------ANAC46                                        -                    --------->AHL20(1)      <---------AtLEC2                                       --                    <---------AHL20(1)      <---------ANAC58                                      ---             --------->AHL20(2)  --------->ANAC58       ============================================= --------ARR11(3)<---------AHL20(2)         <---------ANAC58   ----------->GT1                ------- -------CCA1(2)  --------->AHL20(2)   --------->ICU4    --------------->AGL15                 ------- >TEIL       <---------AHL20(2)  --------->ANAC58 --------->GLK1(1)                      --------->GLK1(1) ----GT1     --------->ICU4      --------->ANAC46 <---------GLK1(1)                      <---------GLK1(1)   atatcatccgttgaaaaaattatatattagttcataagccatgtttgcctggatttctccaaaagaggttaaccaagttagaatacattggatttcaagg  19562900                            --------->ANAC58         <-------TEIL       --------->ANAC58         <---------------AGL15 ----------->GT1           --------->DAG2            --------------->AGL15 ---------->GT1           ---------->DOF2           --------->TOE2(3)               ----------->HVH21 ------->DAG2         --------->ANAC58         ---------->DOF2           --------->TOE2(3) ------->DOF2         --------->ANAC58   ----------->GT1                 --------->TOE1(3) ====================================================================MADS_MADS      --------->WRKY12 -->ANAC58       <---------GLK1(1)    --------->GLK1(2)               <-----------GT1 -->ANAC58       --------->GLK1(1)   <---------GLK1(2)      ----------->GT1        --------->DOF5.7(2)   aaaagttaaaatgcattggatttcaaggaaaagccaatagaatcggtgataaagcctaaatatagtaaaattttacctcaacatcgttgacatatgtttc  19563000  Previous    Next  AGI:  At5g48200.1    Description:  unknown protein Range:  from: 19562481    to: 19564496    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version