Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <---------ICU4                                      --------->YAB1     --------->ICU4      --------->TOE2(3)         --------->ZAT6       ------->GAMYB       --------->WOX13(1)      --------->TOE1(3)    --------->ANAC46       <-----------GT1      <---------AHL20(2) --ZmHOX2a(2)              --------->ANAC55(2)  <---------MYB52(2)  --------->AHL20(1)--------->YAB1   caacataacctcaagttatattcgtctatacataacacaattctaatgcaaataaccacataattagacatatattaatcaaatctattgataaaaacag  19541500                                     <---------TOE1(3)                                     --------->MYB59                                <----------DOF2--------->ANAC46          <---------HSFC1(2)                               --------------->AGL15                     <---------HSFB2a(1)                               <---------------AGL15               ---------->DOF2                              <-----------------AG               <---------ATHB12                              ----------------->AG----------->RAV1(1)    --------->HSFB2a(1)                              ----------------->AGL1         <---------MYB111(1)         ---------->DOF2                 <----------ID1<---------DAG2  --------->ANAC58------>MYB83           <------ZmHOX2a(2)             ---------->DOF2  <-----------------AGL1         --------->AtMYB61        ===============          ----------->RAV1(1) ----------------->AGL3      ------->GAMYB  --------->HSFC1(2)         <      --------->GLK1(2)     <---------CCA1(2)  --------->ANAC58------>MYB46(1)      <------ZmHOX2a(1)   <---------TOE2(3)     <-------TEIL<---------TOE2(3)   --------->MYB46(3)    ----------->RAV1(1)<--   agattaagaatccaacaaagctacaaattcatacctttttaggttatctaagcaacataaccaccaaatcaaagaattttccaacaggatcaaaagaaga  19541600                       <---------bZIP60(1)                       --------->bZIP60(1)                                        <---------ARR14(2)             ------>MYB46(1)                                                   --------->YAB1             ------>MYB83        --------->CCA1(2)                        <------ZmHOX2a(2)           <---------MYB59    ------------------------>ANAC81            --------->ARR11(3) --------->ATHB12    --------->YAB1             ---------->DOF2          <---------ARR11(3)       --- ====HOX2a_HOX2a    <---------YAB1   ---------->DOF2            =================HOX2a_HOX2a      --- ---------YAB1    --------->YAB1<---------ARR11(3)              <------ZmHOX2a(1) --------->ARR14(2) ----ZmHOX2a(1)  <---------YAB1 --------->ARR11(3)----------->GT1    ---------->DOF2           ------   ggatgatttaagacctaatattatcatgtcataagatataaaagaaaaacaaaagttataacttgaggaatcaaagatcaaacagaactgttctaagtga  19541700                          ----------->HVH21                        --------->O2                        =================bZIP_DOF                        ----------->RAV1(2)                        --------->ZAT2                        --------->At4g35610                        <---------ZAT2                        <---------TGA1a                        <---------O2                        =================bZIP_DOF                        --------->TGA1a                        <---------At4g35610                       --------->MYB52(1)                       ------>MYB46(1)                       ------>MYB83                       -------->P                      <---------ALFIN1                     <---------MYB59                     <---------MYB111(1)      <---------------AGL15      --------------->AGL15     ----------------->AGL3   <----------DOF2     ----------------->AGL2   <---------DAG2         --------->DAG2   --------->GLK1(2) <---------MYB111(2)            ---------->DOF2  --------->GLK1(1)  --------->MYB46(3)          --------->TOE1(3) ------>ANAC58     <---------ZAT18<---------LBD16--------->TOE2(3) ------>ANAC58 <---------------AtSPL8  <---------At4g35610 --->ZAT18     --------------->AtSPL8  --------->At4g35610       <---------YAB1            <------ZmHOX2a(1)   acgaaaatccaaatttagtagtacccacctgactttttcggagatgagaaaccttaaagtagtgaatgttattgaagttccatgtgaaccagaggaagag  19541800                                 ------->MYC2                                 <-------MYC3                                 ------->MYC3                                 <-------MYC2                               <-------TEIL                           --------->ANAC58                           --------->ANAC46                      <----------ARF1                     <------NtERF2                     --------->MYB52(1)                   --------->ETT(1)            ---------->DOF2                   <---------ANAC46          --------->ANAC58                   ----------->GT1                 <-----------HVH21           --------->ANAC58                  *TSS        ==========           ---------->DOF2 --------->ANAC58<---------ANAC46               <---------YAB1   ----------   agaagggaagagagaaagttgtcggagacaaggcacatgggaatggctcgaaagacaaaacagaagtctcactcttatcacagagaaaaaaaaaaaagaa  19541900                --------->ALFIN1                             --------->ANAC46              <---------ANAC46                               --------->bZIP60(2)              <---------O2                                 <---------ALFIN1              <---------ANAC58                             --------->AtMYB61              --------->TGA1a                           --------->AtMYB61              <---------ANAC58                          --------->DEAR3(1)                  <--------              <---------TGA1a                           <---------ALFIN1                    ---------    --------->TOE1(3)                                  <---------MYB55(2)                   <--------    --------->TOE2(3)                                  --------->MYB46(3)    <------------CBF    --------->YAB1                  --------->ANAC58 --------->ANAC46       --------->ATHB12---------  --------->GLK1(2)      <---------YAB1              <---------ALFIN1      <---------AHL20(2)       -  <---------ARR11(3)    <---------TOE2(3)    <-----------HVH21             --------->AHL20(2)<------- <---------GLK1(2)     <-----------GT1      <-----------RAV1(1)         --------->ATHB12   --------->YAB1 =======================bZIP_DOF    --------->ANAC58--------->MYB46(3) <---------YAB1      --------->AHL20(2) >DOF2    --------->DEAR3(2)   <-----------GT1    --------->PCF2--------->ATHB12          <---------ATHB12   acagaatcttaaaccggcgtgtgatttacgattataccactcaaacatgtcgctcccaccaccacatcatttgatgatttattgagcctccaattatatt  19542000                  <---------ICU4                  --------->ATHB51         <------NtERF2     <-----------HVH21                                                                    <---------AHL20(2) <-------TEIL     --------->ATHB12                                                      <---------CCA1(1) -AHL20(2)       --------->ICU4                                           <---------TOE2(3) >AHL20(1)     --------->YAB1                                       <---------TOE1(3)  <---------GLK1(2) -AHL20(1)    <-------TEIL                                 --------->YAB1---------->DOF2<---------RVE1(1) >AHL20(2)--------->LBD16                           --------->ZAT6  <---------TOE2(3)  <---------ARR11(3) -------->CCA1(2)<---------YAB1               --------->ZAT6        <---------YAB1     --------->ARR11(3) --YAB1 <---------LBD16 ---------->ID1     <----------DOF2 --------->TOE2(3)     <---------AHL20(2)   agatacatgtccccgattcattatttgtctcaatctagttttcaactttcactatctctaatcttagtttaagattaaagtattaaaaagattttttttt  19542100                                              --------->AHL20(2)                <--------ZAP1                 <---------AHL20(2)          --------->GLK1(2)              <-------TEIL        <---------HSFB2a(1)        --------->LBD16        --------->HSFB2a(1)        --------->ANAC46        --------->HSFC1(2)        --------->HSFB2a(2)            <---------ATHB12        <---------HSFC1(2)        <---------HSFB2a(2)         <---------AHL20(2)       ----------->GT1    ----------->GT1          <---------HSFB2a(1)     <---------TOE1(3)             <---------AHL20(2)  <---------------------WRI1 --------->HSFB2a(1)     <---------TOE2(3)            --------->AHL20(2)   gttaatcggaaaattctaggtcaaaaccgaaacattcccgaaatgcatataaattcaggtttttttaatcactaaaatcgtctataaaattgtcaaattg  19542200                               <--------ATHB1                               --------->ATHB12                               --------->ATHB51                     --------->TOE2(2)                     --------->TOE1(2) <---------AHL20(2)               ------>ZmHOX2a(1) <---------WOX13(1) --------->YAB1              --------->TOE2(3)<---------ICU4  --------->ANAC46        <---------AHL20(2)    <---------YAB1  --------->TOE2(3)                 --------->TOE1(3)  --        --------->AHL20(2)    --------->ICU4  --------->TOE1(3)                 --------->TOE2(3)  <-       --------->AHL20(2)   --------->YAB1 <-----------GT1                      --------->YAB1 <-----   taagtgcaaattaattcctaaaacatacgagaataattgatttttttaccctaaacataatcaaaccagagccactggtttaccataacttaagtttata  19542300                                                                            --------->ATHB51                                                                            <--------HAHB4                                                                            --------->ATHB12                                                                            -------->ATHB1                                                                            <---------ICU4                                                                            <---------AHL20(2)                                                                            --------->AHL20(2)                                                                           <---------ATHB51          --------->AHL20(2)                                               <---------ATHB12          <---------AHL20(2)                                          ------>NtERF2         --------->AHL20(2)                                          --------->RAP2.6(2)         <---------AHL20(1)                                       --------->ANAC58         <---------AHL20(2)                                       --------->ANAC46   ----------->GT1                                         ----------->RAV1(1) ------->ZAT14                                          <-----------GT1    --------->ICU4 --------ZAT14    <---------DAG2                   --------->ICU4 --------->ANAC58                  - ----------AtSPL8 <----------DOF2             <---------AtLEC2  ---------->DOF2              <-------   gtacagagtaatttaattagcttttttttgtcaccaaaaacaaaatttgcataaatattaacaacacaaagccaccaattatttgagtaaatgttctttt  19542400  Previous    Next  AGI:  At5g48150.1    Description:  PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor. similar to SCL21 (SCARECROW-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT2G04890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41200.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 19539481    to: 19541879    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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