Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->REM1(1)                      ------>ZmHOX2a(1)               <---------ICU4               --------->YAB1              <------ZmHOX2a(2)          --------->YAB1              ===============HOX2a_HOX2a --------->TOE2(3)        --------->ARR14(2)        <------ZmHOX2a(2)                 --------->YAB1           <-------        <---------ARR14(2)       <---------ARR11(3)                <---------ATHB12      --------->ICU4    =========================HOX2a_HOX2a----------->GT1          --------->WOX13(1)    <---------ICU4    ------>ZmHOX2a(2) ===================HOX2a_HOX2a    --------->AHL20(2)          --------->YAB1 ---->DOF2    <---------ATHB12   --------->ARR11(3)     --------->YAB1    --------->ANAC46<---------ICU4   agttgatccatttccgatcatgtcctacattacaagatcacaatgttaaaaccctcaattaaaaactcaatcacacacagaacaattcataagtattaca  19486700                                                        <---------WOX13(1)                                                      --------->ATHB12                                 --------->ARR14(2)   <---------ICU4                     --------->ARR14(2)              --------->ICU4                     <---------ARR14(2)              <---------YAB1                     --------->ARR11(3)            --------->YAB1                     <---------ARR11(3)      --------->ANAC58                     <---------GLK1(2)       --------->ANAC55(2)                  --------------->AGL15      --------->ANAC58                  <---------------AGL15      <---------ANAC55(2)                 <-----------------AGL1    --------->YAB1                 ----------------->AGL3   <---------ATHB12     <---------ALFIN1  <---------YAB1 ----------------->AGL1 --------->WOX13(1)     --------->ZAT6 ----GT1        -------->P       <---------ARR14(2)<---------AtLEC2              ------>ZmHOX2a(1)   tcttcttataaacccagttaccagattttgaagcgtaatctccaatcacgttagcatgattgccaacactcgtattcaatctcctataactcccaataca  19486800                           <---------TOE1(3)                                                 <-------                           <---------TOE2(3)                                               --------->ATHB12                        ----------->HVH21                                                 <---------YAB1          --------->ARR14(2)                                                           ------->TEIL          <---------ARR14(2)                                <-------TEIL            <---------MYB52(2)   ------>ZmHOX2a(1) <---------TOE2(3)                     --------->CCA1(2)   <------ZmHOX2a(1)   tactcctctcagtttctgcaatttaggtgaaggttaaccaattcgaaaccaattgagagagatacagagaaacatagaagaggagaacgaacctgattgg  19486900                                                                                                  ---                                                                                              <------                                                         --------->ANAC46                    ------>ZmHOX2a(2)                                                   <---------HSFB2a(1)                     --------->ARR11(3)                                                  ------->TEIL                             <---------ARR11(3)                                                 <---------ARR14(2)                 --------->ANAC58                                          --------->ANAC58                       ------>ZmHOX2a(1)<-- <---------ARR11(3)                       --------->ANAC58                       ===================HOX2a_HOX2a --------->ARR11(3)                     --------->MYB46(3)------>NtERF2         --------->TOE2(3) <-- --WOX13(1)                      ------>NtERF2 ----------->ARR10      <---------PCF5--------->ANAC58   ctaaatcttgaataagcgatgaagagagacatcgacgactcaacaagcgaagaacctttgcgccattggaagggaccattttcctcaagcttcgatcttt  19487000                                                                       ----------->GT1                                                                     ---------->DOF2                                                                  --------->At4g35610              <---------AHL20(2)                                 --------->RAP2.3(3) ------>MYB59<---------AHL20(2)                                --------->At4g35610 ----DOF2    --------->AHL20(2)                                --------->ZAT2 -------TOE2(3)                    <------MYB46(1)             --------->ZAT14 -------TOE1(3)                    <------MYB83                <---------At4g35610                 <-   taggttctactcaaattatatggagattgtactaagtgggtttaagtctcgagggattgagacagagcagccaaagttaaaaccctagccaaaaccctgt  19487100                                                                                             <-------                                                                                          --------->ARR14(2)                                              ------------>CBF                            <---------ARR14(2)                                             --------->ANAC58                            <---------GLK1(1)                                             --------->ANAC58                            <---------CCA1(2)                                             <---------ALFIN1                          --------->YAB1                                             --------->ANAC46   <----------DOF2    <---------MYB55(2)                                           ----------->RAV1(1) <---------DAG2      --------->MYB46(3)                                           <---------ALFIN1  ---------->ID1       --------->ANAC58                                        --------->ANAC46    <---------WRKY18(1)   --------->ANAC46                --------->ZAT14         --------->ANAC58    <-----------GT1       --------->ANAC58                <---------ZAT14     <---------MYB46(3)--------->LBD16            ------>NtERF2    <---------ANAC58               <---------MYB52(1)<---------ANAC46           <---------ALFIN1    <    <---------ANAC58        *TSS  <-------GAMYB    --------->MYB52(1)         ------->GAMYB  -------- ---------->ID1 --------->REM1(2)<-----------RAV1(1)<---------LBD16          --------->ANAC46-------- ----------RAV1(1)       <-------TEIL   --------->ANAC58   ----------->HVH21-------->P<---------ATHB12   tttgttgcttcagaactgtgtagaagatgcaatttctgttgttcgccacacaataccgggtttgaccttttcttactcaaccccacccatcatatccgac  19487200              --------->LBD16        ----------->HVH21        --------->ANAC46       --------->MYB46(3)                                             --------->AGP1      --------->ANAC46                                          --------->ANAC58     -------->P --------->SPL7                              --------->ANAC58    <-----------GT1                                         --------->ANAC58 <-----------ARR10                                   <---------------AGL15 --------->ARR14(2)                        >>>>>>>>>>>>>>>>>LFY --------->ANAC58 <---------ARR11(1)              --------->TOE2(3)   --------------->AGL15 <---------ARR14(2)              --------->TOE1(3)  ----------------->AGL3 --ETT(1)   <---------LBD16     =====================================MADS_MADS --------->ZAT14 ---------CCA1(2)         --------->YAB1  <---------PCF2    --------->ANAC46   <---------ZAT14 --->HVH21<---------ARR14(2)    <-----------------AGL3    ---------->DOF2 <---------ZAT14 ->ANAC46 --------->ARR14(2) <-----------GT1        ----------------->AGL2--------->ZAT14   ccaaatctacccgacccggaccatcgacttataacccttaaatgggcccaatggcccattaaaagcaagacagaactacagtatagttgccatcgtctct  19487300                                                                                     --------->MYB46(3)                                                                                     <---------MYB55(2)                                                                                    --------->ANAC58                                                                                    --------->ANAC46                                                                                  <---------ALFIN1                                                                                 --------->AtMYB61                      --------->WRKY38(1)                                    <---------ETT(1)                      --------->WRKY12                                       ----------->HVH21                --------->ANAC46                                            --------->MYB46(3)        <------NtERF2<---------WOX13(1) ------->GAMYB                       --------->DEAR3(2)        <---------MYB52(1)         <---------ATHB12                     ----------->HVH21       ------>NtERF2<------------CBF--------->YAB1                      <---------ETT(1)       <-----------HVH21          ------>MYB46(1)                   <-----------GT1------>MYB83       <-----------TGA1<---------WRKY18(1)                         --------->WRKY38(1) <-----------HVH21       <---------RAP2.6(3)        ------>MYB83                     --------->WRKY12------>MYB46(1)      --------->RAP2.3(3)        --------->WOX13(1)              *TSS  --------->DEAR3(2)      --------->DEAR3(1)       ------------>CBF    <----------DOF2 ----------->HVH21--------->ANAC58      --------->ANAC46----------->HVH21--------->MYB46(3)        <------------CBF<---------MYB55(2)     --------->RAP2.3(1)    <---------MYB52(1)<----------DOF2 ------------>CBF   --------->MYB46(3)   --------->ANAC46--------->ATHB12--------->MYB46(3)  <-----------GT1 --------->MYB46(3)--------->YAB1   gtaactcgccgtcattccacacgattgaccggtaccaatcaacagtcactttccttttaactcgcccaattgacccgacccgacccacccatcagaacta  19487400                                <---------ANAC46                                <---------ANAC58          --------------------->WRI1                   --------->HSFB2a(2)         <------NtERF2          <---------ANAC58       <---------HSFB2a(2)        ------>NtERF2        <---------MYB52(1)       ------>ZmHOX2a(2)            <---------At4g35610       --------->DEAR3(1)   <-------GAMYB         ----------->HVH21      ----------->GT1    ---------       <---------DEAR3(1)  <---------MYB46(3) <------MYB46(1)       --------->ARR14(2)      <--------     <-----------HVH21    <------NtERF2       <------MYB83        --------->LBD16  --------->ANAC55(2)  <---------DOF5.7(2)    ------>NtERF2       <---------AtMYB61  <---------LBD16    --------->ANAC46  <---------At5g28300    <-----------HVH21--------->ALFIN1     --------->MYB52(1) <---------TOE2(3)-- <-----------GT1        --------->DEAR3(1)<-----------RAV1(1)----------->HVH21   <-----------RAV1(2)   tagttaccgtcgcctctgtaacttcgccgtcgttgcttacgactgtgttggtctgatcgagaaatgaccggaaacttgtgaattcaggtaacttctacaa  19487500                                                                                                 <---                                                                                           --------->YAB1                                                                                           --------->ATHB12                                                                                           <---------ICU4                                                                                           -------->HAHB4                                                                                          <---------ATHB12                                                                                          --------->ICU4                                                                                         <---------TOE2(3)         --------->WOX13(1)                   <---------MYB52(1)                        --------->YAB1 <---------YAB1                              <-------GAMYB                           --------->TOE2(3) <-----------GT1        <---------At4g35610---------->ID1                          <---------TOE2(3) >HSFB2a(2) --------->YAB1               <-----------RAV1(1)       ---------->DOF2<-----------GT1---- -HSFB2a(2)<---------ATHB12           ------>ZmHOX2a(1)    <-----------GT1      <---------AHL20(2)  < ------->YAB1          <-----------GT1<----------DOF2--------->TOE2(3)         --------->YAB1<-------   attatacttctcaatcatctaatttcaactgttcatcgtccttttgtcgttgtttccataaaaacctcacaaagtctccaattttaacattaatgatgag  19487600  Previous    Next  AGI:  At5g48030.1    Description:  GFA2 (GAMETOPHYTIC FACTOR 2); heat shock protein binding / unfolded protein binding. similar to ATJ1 (Arabidopsis thaliana DnaJ homologue 1), heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G28210.1); similar to ATJ1 (Arabidopsis thaliana DnaJ homologue 1), heat shock protein binding / nucleic acid binding / unfolded protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G28210.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO15087.1); contains InterPro domain Heat shock protein DnaJ, cysteine-rich region; (InterPro:IPR001305); contains InterPro domain Heat shock protein DnaJ; (I Range:  from: 19483237    to: 19487128    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g48040.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58520.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96426.1); contains InterPro domain Protein of unknown function DUF860, plant (InterPro:IPR008578) Range:  from: 19487365    to: 19489671    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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