Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <----------DOF2                                                                     <---------ICU4         --------->ANAC58                               <----------DOF2                   ------>MYB83         --------->ANAC58                        <----------DOF2     --------->YAB1       ------>MYB46(1)  --------->YAB1                 --------->TOE2(3)    ------>ZmHOX2a(1)                 <---------MYB46(2) ------DOF2            <---------ICU4       ---------->DOF2        --------->GLK1(2)    <---------MYB59   ttattcaaaataagcaaaaccaaaatcactactaatctaaaacagtgaaagctttcctctttataaaacaatctttattcaaatccaataccaaacaaca  19424200                                                             ----------->GT1                                                             ------>ZmHOX2a(1)                                                   --------->ANAC55(2)                                                   --------->ANAC55(1)                                                   <---------ANAC55(2)                                                <<<<<<<GRF7  --------->LBD16              --------->YAB1                                   <---------REM1(1)     --------->ARR11(3)             --------->GLK1(2)                       --------->ZAT14        ----------->HVH21              --------->ANAC58  <-----                       <---------ZAT18      ----------->RAV1(2)              --------->ANAC58<-------   ttgttaagactctatacaaaattagtaaactcacatgttgaagcatccctgacacttaacatcctgaaaaaaatcacacaaacaatacagaatcagattc  19424300                                                                                   --------->ANAC58                                                                                   --------->ANAC58                                                                                   --------->ANAC46                                                                                --------->ZAT18 --TEIL                             ---------->DOF2                   --------->ALFIN1              < --GLK1(2)   ----------->GT1 --------->GLK1(1)                     <------ZmHOX2a(1)           <-----   atttcatcgcatcaaatgtaatacaaatcagatttcataaaagaaaacagaaaacagtaccatgaagaaggagttgggagattgcacgagacgcttgagc  19424400                            <-------GAMYB                            <------NtERF2                            --------->At4g35610                           <---------MYB46(3)                          <---------ANAC46                          <---------ANAC58                          <---------ANAC58                          <---------RAP2.6(2)                         --------->ATERF1(1)                         <------NtERF2                         <---------LBD16                       --------->ALFIN1                                 <-------TEIL                       ----------->HVH21                               <------ZmHOX2a(2)                       <---------DEAR3(1)                             --------->AGP1                     ===============MYC_MYB                           --------->ARR14(2)                     --------->TGA1a                         ------>MYB46(1)                     <---------TGA1a                         ------>MYB83                     <---------At4g35610                   <---------MYB46(2)                     <---------O2                          <---------MYB59                     --------->ZAT2           <---------ANAC58        <---------ARR14(2)                     --------->O2    --------->GLK1(1)     <---------MYB111(1)   ============================bZIP_DOF       <---------ANAC46   --------->MYB52(1)   <----------DOF2   <---------ZAT2<------ZmHOX2a(1)      --------->ANAC58 ---------YAB1       --------->At4g35610      <---------ANAC58 <---------ATHB12 ----At4g35610     <-----------RAV1(2) <------ZmHOX2a(2)  --------->ANAC58   ttatgctttctcttctcaagctcaggtggcggatgaaggagatcgatgtcgttttggagcacctaatcaacagatccataaaaaaaaaactcagagatta  19424500                                                                       <------NtERF2                                                                       --------->RAP2.3(1)                                                                      <---------RAP2.3(1)                                                                      <---------ERF1   <--------P                                                                      ------>NtERF2   <-------GAMYB                                                                      <---------DEAR4(2)                                                                      <---------ATERF1(1)                                                         <---------ANAC58            <------MYB83                                                         <---------ANAC58            <------MYB46(1)                                                         <---------ANAC46  <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      <---------WOX13(1)  ---------->DOF2                                                    --------->ATHB12  <---------ORA47(2)                                                    <---------ICU4   <---------DEAR3(1)<---------WOX13(1)                                                   --------->ICU4    <---------RAP2.3(2)                                                   <---------YAB1    <---------RAP2.6(2)                                              <-----------GT1        <---------RAP2.3(3)<---------MYB46(3)                 ----------->GT1         <---------CCA1(1)        --------->DAG2    --------->MYB59         ---------->DOF2                 <---------RVE1(1)      ---------->DOF2  --------->ARR14(2)   ---------->DOF2----------->GT1       <---------ARR11(3)   <---------HSFB2a(2) --------->GLK1(2)  <------ZmHOX2a(1)<------ZmHOX2a(1)    --------->ARR11(3)   --------->HSFB2a(2) <---------ARR14(2)   cagaggaaagtgaaagagagaggaaaatcaagaacaaggagagatatttcaccatgattgcttgtggaaaggcggcgaaagcgaatttggttgatgaaac  19424600                                                                          --------->ANAC58                          <----------DOF2                            ----------->HVH21   <----------DOF2                        <---------At4g35610                   --------->ANAC58    <------------CBF                        --------->At4g35610                   --------->ANAC58   --------->ATHB12                     <---------ZAT14                       ----------->TGA1    <<<<<<<<<<<<<<<<<LFY           --------->CCA1(2)                               ----------->HVH21--------->ANAC46        ----------->ARR10 *TSS   ------------>CBF       <---------MYB46(3)--------->ANAC46         -- ---------->DOF2     <---------At4g35610             <-----------RAV1(1)  --------->ANAC58         <-   cctagaagcgaagagacggagactgcagctttagcttcaatctaagtatatatgtctgtgggtgacgaaatgtgacacacaaaacattgggccttatagg  19424700                                                                                                <----                                                                                             --------                                                                                            ---------                                                                                    --------->TOE2(3)     <------------CBF                                                              ----------->GT1 ------->ATERF1(1)           --------->ALFIN1                            ------------------------>ANAC81 --------ALFIN1           <------ZmHOX2a(1)                       <----------DOF2  <---------ANAC55(2)   cccagcccattgtacatataaacaagtaggagtgggagaaattcggcttagcaatttgtatgctcttactttggaaaactaaaaaacgtaaacaaaaagt  19424800                                                                                 ------>ZmHOX2a(1)                                                                             --------->ARR11(3)                                                                             --------->ARR14(2)                                                      ----------->ARR10      <---------ARR11(3)                                               ---------->DOF2               <---------ARR14(2) <---------ANAC55(2)          ------->GAMYB<---------WOX13(1)               --------->GLK1(1) <---------ANAC46     <---------YAB1     --------->ATHB12                   <---------GLK1(1) -----ZAT6          <-----------GT1     --------->AHL20(2)                 --------->ARR11(3) ->DAG2             --------->YAB1      <---------AHL20(2) ----------->GT1 <---------ARR11(3) ->DOF2           <-----------GT1 ---------->DOF2  <------ZmHOX2a(1)--------->AHL20(2)  -------------   gttatgtatagttgaatatttatcaccattaaccccaaaagattaattgaaaaggatagatttgtaacaataaactagatatcctctcaatatgtacaac  19424900                                                                         <-----------------AGL1                                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                                   <---------MYB46(3)                                                                   <------MYB83             ------->GAMYB                                                                  <---------TOE2(2)        <---------ALFIN1                                                                 <---------MYB52(1)       ------>MYB46(1)                                                               <---------TGA1a            -------->P                                                               <---------O2               ------>MYB83                                                               =====================================MYC_MYB                                                               ====================================MYC_MYB                                                               --------->TGA1a           <xxxxxxxxxxx                                                               --------->O2             --------->AtMYB61                                                           <-----------HVH21    --------->ANAC46                                                          --------->ANAC46      <---------RAP2.6(2)                                                          --------->ANAC58     <---------LBD16                                                          --------->ANAC58<---------------AGL15                                                  <---------CCA1(2)<------MYB46(1)<---------At4g35610                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------------->AGL15                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ZAT6<xxxxxxxxxxxxx                              <-----------HVH21 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <------NtERF2                         ================================================bZIP_DOF --------->At4g35610     --------->MYB59     <----------DOF2<---------ZAT6    --------->bZIP60(2) <-----------RAV1(1)---- -->AtSPL8      <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <xxxxxxxxxxxxxxx   ttaaacttaggtctcactgagagttgtctttatgtcacattagtgttccctcatagctccaagtcacgttggtttactctatgcggcagaccaactcccc  19425000                                                                                   xxxxxxxxxxxxxxxxxx                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                                <xxxxxxxxxxxxxxxxxxxx         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <---------SPL7         xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------>ZmHOX2a(1)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                              xxxxxxxxxxxxxxxx>smallRNA(i)      --------->TOE2(3)<----------DOF2                    <xxxxxxxxxxxxxxxxsmallRNA(i)             <-   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <xxxxxxx xxxxxxxxxxxxsmallRNA(fl3)                    >>>>>>>>>MYB98          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->HVH21   <---------WRKY38(1)        ------>ZmHOX2a(1)xxxxxxxxxxxxxxxx>smallRNA(i)   ------>ZmHOX2a(1) xsmallRNA(i) ----------->GT1             --------->YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <-----   taacccttcctcaagatggtcaattctttgctatagtctatctatcctaacaaatcgtactaagaagtcgagtggcaacgtactggtctgagtcctagcg  19425100  Previous    Next  AGI:  At5g47930.1    Description:  40S ribosomal protein S27 (RPS27D). Identical to 40S ribosomal protein S27-3 (RPS27D) [Arabidopsis Thaliana] (GB:Q8L953;GB:Q9FGV6); similar to ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G61110.1); similar to ribosomal protein S27 [Brassica rapa] (GB:ABL97986.1); contains InterPro domain Ribosomal protein S27e; (InterPro:IPR000592); contains InterPro domain Ribosomal protein, zinc-binding; (InterPro:IPR011332) Range:  from: 19423389    to: 19424626    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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