Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->ANAC46                --------->ANAC55(1)                --------->ANAC58             ------->GAMYB            <---------ALFIN1                                                          --------->ANAC46    <---------AHL20(2)                                                                --------->LBD16    --------->AHL20(2)                                                               --------->HSFB2a(2)   --------->AHL20(2)          <---------YAB1                                        <---------HSFB2a(2) ---------YAB1  --------->ANAC58--------->YAB1                                      <---------LBD16-- ------->AHL20(2)        <---------WOX13(1)    ---------->DOF2            --------->GLK1(2) --------- --------AHL20(2)      --------->ATHB12   <----------ID1                 <---------GLK1(2)  ---------   ttaaaattaattcaacacacgaaatcgattgctatgatatcaaaacgagaaaagccgataaacaagtatacttaagaatctaaaattcccgaaacctaaa  19405600            --------->AtLEC2            --------->ANAC58            --------->ANAC58           ------->MYC2           <-------MYC2                     <------ZmHOX2a(2)        ------->GAMYB                   <---------ATHB12                             <------ZmHOX2a(1)  --------->YAB1                      --------->WOX13(1)                            <----------ID1  --------->TOE2(3)                --------->GLK1(2)                              <---------ICU4 ------->MYB52(1)           <------ZmHOX2a(2)                 <---------ATHB12 --------->YAB1 >TOE1(3)  <-------MYC3   <---------At4g35610          --------->YAB1    --------->ANAC55(2) >TOE2(3)  ------->MYC3   --------->At4g35610        <---------KAN4(2)   <---------ANAC55(2)---------   acaacgataaccacatgcaaaacaaatcagatcacagaatcaatcgatcaaatcgaataatcaaatcaaacaattacgaattcataaggacaaattaaaa  19405700                          ----------------->AGL1                                <---------------AGL15                          ----------->RAV1(2)                              <----------DOF2                         ------->TEIL                                <---------AHL20(2)                         --------->MYB52(1)                          <---------AHL20(1)                     --------->DAG2                       --------->HSFB2a(2)<-----------GT1                <------ZmHOX2a(2)                  --------->ANAC58  --------->AHL20(1)               --------->ARR11(3)                  --------->ANAC58 --------->AHL20(2)     ---------->DOF2---------->DOF2             --------->WRKY18(1) --------->YAB1       ------------ >AHL20(2)     <---------ARR11(3)>>>>>>>>>TBF1------->GAMYB        <---------YAB1       *TSS   <-----   cccaaaaaaaagatgaagatcaaaaagtacctgaagaagaaggaacaacgctcaagccttcgacaacttattatattctttactgtatgaagacaatttg  19405800                                                                   ------>MYB46(1)                                                                   ------>MYB83               --------->AHL20(2)                               --------->DEAR3(2)              <---------AHL20(1)                              --------->MYB52(1)              <---------ARR11(3)                          >>>>>>>>>MYB98            --------->GLK1(2)                            ------>MYB83  <------NtERF2----------->TBP                           ------>MYB46(1)  <---------AHL20(2) >CBF---------->DOF2<-----------GT1                      --------->MYB52(1) ------RAV1(1)--------->ARR11(3)                       <---------MYB59   --------->AHL20(2)     <----   tggcagagaaagagaatatatataacctagtttttttttttttttttttggtctaaacctaacaaaaccgactcatttaatgggcctaagcccagtaact  19405900                                                                                                  <--                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                   --------->ANAC55(2)                                     <---------                       ------------>CBF  <---------AHL20(2)    <---------ARR11(3)       <---------MYB52(1)                  <------NtERF2<----------DOF2                 --------->ARR11(3)      <-------GAMYB       --------->ANAC55(2) <---------ATHB12                    *TSS                <----------DOF2--- ------DOF2   <----------ID1<---------ARR11(3)             ---------->DOF2 <----------DOF2 --------->ALFIN1   ttccgactcacttaatgggccgaagaccaataactttacttaattcattttcacatgaacacaaagttctctctggtctttgattctttcgttgtgtggc  19406000                                                                         --------->ARR14(2)                                <---------AtLEC2                        <------ZmHOX2a(1)     <---------ZAT6             <---------ANAC58                      <---------TOE2(3)     ----------->GT1            <---------ANAC58                 <---------ARR11(3)              <--- -------At4g35610    >>>>>>>>>TBF1       <------ZmHOX2a(1)   ---------->DOF2    <----------DOF2  <--- --RAV1(1)    <------ZmHOX2a(1) <---------ANAC46           <---------YAB1<---------GLK1(2)       ---- ------>At4g35610 >>>>>>>>>TBF1<-----------------------TaNAC69(2)--------->ARR11(3)   --------->WOX13(1)   atctgaagagttaagaggaagaagaagaacgatggcatggagaggaagcatatcgaagtctatgaaagagcttaggattcttctttgtcaatcttctcca  19406100        <---------ALFIN1       --------->MYB46(3)     --------->PCF2   <---------ZAT18                                                   <---------ARR14(2)   --------->ZAT14                           ------>ZmHOX2a(2)       --------->ARR14(2)   --------->ZAT18            --------->ANAC46                      <---------GLK1(1) ------At4g35610              --------->ANAC58          <-----------GT1                             < ------ZAT2                 ---------->DOF2 <------ZmHOX2a(2)       <---------CCA1(2)               < ----->ZAT2<-----------RAV1(2)--------->ANAC58      <---------AHL20(2)    <---------MYB52(1)        <   gctagtgctcccaccaggtttcaatttgatcaaagcaatctctgagatcggaattttttttcaatgttccatatccgttttgtgatttatagggtttttg  19406200                                                                                       <---------ZAT18                                                                           <---------ANAC55(1)                                                                           <---------ANAC58                  <-------GAMYB                                            <---------ANAC46             <---------HSFB2a(1)                                           <---------ANAC55(2)        <---------HSFB2a(2)                                         --------->YAB1     --------->ZAT14        --------->HSFB2a(2)                                        <---------ATHB12    <---------ZAT14  <---------MYB52(1)       <---------ICU4             --------->TOE2(3)    <---------ANAC58 <-------GAMYB <---------MYB52(1)                     --------->TOE1(3)   ------>ZmHOX2a(2) ---------ANAC58 --------->MYB55(2)   --------->CCA1(2)           ------>MYB83      <---------ANAC46 ---------ANAC46 --------->MYB52(2)  <---------ARR11(3)           ------>MYB46(1) <---------ZAT14 ---------ANAC58 <---------MYB46(3)  --------->ARR11(1)      <-----------GT1--------->LBD16        <-   tttcgttgtttcagaacgtttgttgagaagaattacaaagatttgaagtctctaaaccctaaattaccaatcttgatccgtgaatgtagtggagtccagc  19406300                 ----------->GT1              --------->CCA1(2)              --------->ARR14(1)             <---------ARR14(2)             --------->ARR14(2)             <---------ARR11(3)             --------->ARR11(3)             --------->ARR11(1)           --------->ANAC58           --------->ANAC58           ----------->ARR10     --------->ALFIN1                                                                         <------   ====================================bZIP_DOF                                               -------   --------->ALFIN1                                                                  --------->CCA1(2)   <---------TGA1a                                                                  --------->ARR11(3) <---------At4g35610        <---------DAG2                              <---------AHL20(2)    ------- --------->At4g35610        <----------DOF2      ----------->GT1        --------->AHL20(2)   -------- ----------RAV1(2)--------->At5g28300<---------CCA1(2)              ----------->GT1 <---------ARR11(3)   ctcagatgtgggcaagatatggtaaatttgctttatctcttatctctgtgaaggaaaattttgactcaaattgtttaatttttagagatatgaaaattaa  19406400     <----------DOF2        ----------->GT1 <---------ZAT18        ------->TEIL ---AHL20(2)         <---------YAB1                             --------->YAB1               -------- -->AHL20(1)  --------->CCA1(2)        ----------->HVH21       <-------TEIL                  <------- -->AHL20(2) <---------ARR11(3)  <---------ANAC55(2)  <---------ANAC58               <----------DOF2 ->AHL20(2)  --------->ARR11(1) <-------TEIL          <---------ANAC58   <---------AtLEC2 <----------   ttgtgctcttttaaagatttgatatgaatgtagttacatatgtgacttcttctattgcttctgcattcatattttgtatggaggtgtctttataacatct  19406500  Previous    Next  AGI:  At5g47880.1    Description:  ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1); translation release factor. Identical to Eukaryotic peptide chain release factor subunit 1-1 (ERF1-1) [Arabidopsis Thaliana] (GB:Q39097;GB:Q9FIJ3); similar to ERF1-3 (EUKARYOTIC RELEASE FACTOR 1-3), translation release factor [Arabidopsis thaliana] (TAIR:AT3G26618.1); similar to ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2), translation release factor [Arabidopsis thaliana] (TAIR:AT1G12920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64712.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77215.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63440.1); contains InterPro Range:  from: 19403326    to: 19405788    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g47890.1    Description:  NADH-ubiquinone oxidoreductase B8 subunit, putative. similar to unknown [Populus trichocarpa] (GB:ABK92741.1); contains InterPro domain Mitochondrial ribosome (InterPro:IPR007741); contains InterPro domain NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2 (InterPro:IPR016464) Range:  from: 19405963    to: 19407855    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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