Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              ------>NtERF2                                                                           --------->RAP2.3(2)                                                                           --------->DEAR3(1)                                                                           --------->RAP2.3(3)                                                                           --------->RAP2.6(2)                                                                          --------->RAP2.3(1)                                                                          --------->ORA47(2)                                                                          --------->ERF1                                                                          --------->ATERF1(1)                                                                    --------->MYB46(3)                                                                <---------MYB52(2)                                                               --------->ANAC55(1)                                                               --------->ANAC58     ---------->DOF2                                           --------->ANAC55(2) ------->ZAT2                                                  <---------ANAC55(2) --------ZAT2                                                  ==============MYC_MYB ------->At4g35610                                         --------->DEAR3(1)<------NtERF2    ------- --------At4g35610                                      <---------ALFIN1 <---------ATERF1(1)  ------- ---->SPL7                                           --------->ANAC46------->GAMYB     ----------->HVH21 ----->DOF2    <---------ALFIN1                     --------->DEAR3(1)  ------>ZmHOX2a(2)    <------- --->SPL1(1) ------>MYB46(1)                       --------->ATERF1(1) <------ZmHOX2a(2)     <------- ---SPL7     ------>MYB83                       <---------ZAT18--------->ANAC58      --------->ZAT2 ---SPL1(2) --------->ANAC46                    --------->ZAT14--------->ANAC46      <---------ZAT2 ---ZAT14   <---------ALFIN1                    <---------ZAT14<---------TGA1a       <---------At4g35610 -->ZAT14  --------->MYB46(3)                   --------->ZAT18--------->TGA1a  ----------->HVH21 >ANAC46   <---------MYB55(2)<---------YAB1   --------->bZIP60(2) --------->MYB52(1) --------->At4g35610 ------->SPL14--------->MYB46(3)         --------->ANAC46 --------->ANAC46--------->DEAR4(2) <-------   cagctcccaaagacccaccacgagttctcttatgactgtgttcatgccagggcacagcccaccgcacgtaacgatcgccgccttgacagctgatggctcg  19375000                                                                                           <---------                                                                                          --------->TGA2(2)                                                                                         <-----------HVH21                                                                         <---------TGA1a <-----------TGA1                                       --------->ANAC55(2)               <---------ZAT2 --------->bZIP60(1)                                      <-------MYC3                       ----------->RAV1(2)     <---                                     --------->TGA1a                     =========================bZIP_bZIP                                     --------->ANAC58                    --------->O2   --------->O2                   --------->ATERF1(1)------->MYC3               <---------SPL7         <---------TGA1a        <---------LBD16              <---------O2            <---------MYB46(3)         <---------O2       --------->MYB52(1)            <---------TGA1a        <---------AtMYB61           --------->TGA2(1)      ----------->HVH21         --------->ANAC58            --------->ALFIN1            <---------TGA2(1)     ------>ZmHOX2a(2)          --------->ANAC58    <---------DEAR3(1)   --------->ZAT2 <---------ANAC55(2)   --------->ARR11(3)           <------MYB83        --------->ZAT18  --------->ATERF1(1)<---------bZIP60(1)   <---------ARR11(3)         <--------P  --------->ATHB12<---------ANAC46              --------->TGA1a -------->AtSPL8   <---------ALFIN1  --------->ANAC58    <------NtERF2 ------>NtERF2   <-----------STF1 -------->AtSPL3------>NtERF2 =================MYC_MYB <---------DEAR3(1)<---------O2 <---------TGA2(2) --ANAC46     --------->ATERF1(1)    --------->O2  --------->ATERF1(1)----------->HVH21----------->STF1 --ANAC58    <---------ATERF1(1)<------MYB46(1)    --------->ALFIN1<---------DEAR3(1)----------->TGA1 --ANAC58--------->ANAC46  <---------AtMYB61<---------WOX13(1)  <---------MYB46(3) <------ZmHOX2a(1)   tacatgatctcacggcgaggcccagccctgtggtaggccacgcgtgattgggagtgggcggagtggtcgtaggcgacctgggcgaggatgacgtcagaag  19375100                                                                    <---------LBD16                                                                --------->ATERF1(1)                                                              <---------ANAC46               <-------                                                           ----------->HVH21              ------>ZmHOX2a(1)                                                           ----------->TGA1         --------->HSFC1(2)                                                          <-----------HVH21         --------->HSFB2a(1)                                                         <---------DEAR3(2)         <---------ZAT2         --------->ANAC58                                <---------MYB46(3)         --------->ZAT2         --------->ANAC46                               <---------DREB2C(2)         --------->At4g35610         --------->ANAC58                            <---------ANAC58  <------NtERF2<---------HSFC1(2)   <---------ANAC46    --------->ALFIN1              <---------ANAC58 --------->LBD16   ----------->RAV1(2)   <---------REM1(1) --------->ALFIN1                <---------ANAC46 <------NtERF2 <---------At4g35610 --RAV1(2)           <---------ANAC46<---------ARR11(3) <---------At1g77200         <---------HSFB2a(1) ---ZmHOX2a(1)      --------->ALFIN1 --------->ARR11(3) <---------DEAR3(1)   --------->CCA1(2)   gagtgatgtagaagccattggaggggtggaagtagggattatcttccagtggattacgtcggtgacggaggccggagagagatgggagcttcctgatgct  19375200                                                                                <---------ANAC58                                                                                <---------O2                                                                                --------->O2                                                                                --------->TGA1a                                                                                <---------TGA1a                                                                                <---------bZIP60(2)                                                                                <---------ANAC58                                                                                <---------ANAC46                                                                             <---------ARR14(2)                                                                             ----------->HVH21                                                                            <------NtERF2                                                                           <---------ATERF1(1)                                                                           --------->LBD16                                                                          <---------DEAR3(1)                                                                          <---------ANAC46                                                                         <---------ABI4(1)                                                                         --------->ATERF1(1)                                                                         <------NtERF2                                                                         <---------At4g35610                                                                         --------->At4g35610                                                                         <---------LBD16                                                                        <---------ORA47(2)                                                                        <---------RRTF1(1)                                                                        <---------RAP2.6(1)                                                                        ------>NtERF2                                                                        <---------DEAR4(2)                                                                        <---------RAP2.3(1)                                                                        <---------ERF1                                                                        <---------ATERF1(1)                                                                       --------->ALFIN1                                                                       <---------RAP2.3(3)                                                                       --------->ATERF1(2)                                                                       <---------RRTF1(3)                                                                       <---------DREB2C(2)                                                                       <---------ATERF1(2)                                                                       <---------RAP2.3(2)                <---------DEAR3(1)                                     <---------RRTF1(2)       <------NtERF2                                                   <---------RAP2.6(2)      --------->RAP2.6(2)                                              <---------DEAR3(1)      ------>NtERF2                                                   <------NtERF2     <---------RAP2.6(2)                                              --------->ATERF1(1)     --------->DEAR3(1)                                              <---------RAP2.3(1)     <---------ATERF1(2)                                             <---------DEAR4(2)     <---------DEAR3(1)                                              <---------ATERF1(1)            -     --------->ATERF1(2)                                            <---------DEAR3(1)             --    <---------At4g35610                                     --------->GLK1(2)--------->ARR14(2)  <---    --------->ATERF1(1)                                    <---------GLK1(2)--------->ATERF1(1) <----    --------->At4g35610      <---------bZIP60(1)       ===================================bZIP_DOF---   <---------RAP2.3(1)       --------->bZIP60(1)       ---------->DOF2<---------ABI4(1)      <-------  <---------RAP2.6(2)     ----------->HVH21        ----------->GT1  --------->ALFIN1     --------->ANAC58  <---------DEAR3(1)  <---------YAB1              <---------TOE1(3)--------->ATERF1(1)   --------->ANAC46 --YAB1------>NtERF2  --------->ICU4              <---------TOE2(3)<------ZmHOX2a(1)     --------->ANAC58   agtttcggcggccattcttcggtgatgagtgacaacatcggcaaatttagttagggtaaaagaatcggaggaggcggcggagacgtggcaaacgcagtcg  19375300             ----------->HVH21            <-----------TGA1            <-----------HVH21           --------->ANAC58           --------->TGA1a           --------->O2           <---------O2           --------->ANAC55(2)           <---------ANAC55(2)           =========================bZIP_DOF           --------->ANAC46           --------->ANAC55(1)           --------->bZIP60(1)           --------->ANAC58           <---------bZIP60(1)           <---------TGA1a         <---------ALFIN1        <---------REM1(2)      ----------->HVH21      --------->bZIP60(2)                                                                     -------     <------NtERF2                                                                           -------- --------->ANAC58                                                                         ---------->DOF2 --------->ANAC58        <---------DAG2                                           --------->ANAC58 -------->DEAR3(1)       <----------DOF2                                          --------->ANAC58 ------->ATERF1(1)   ---------->ID1                                              <---------LBD16 ------ANAC46--------->TGA2(2)                                 <---------At4g35610--------->ANAC46 -----LBD16--------->bZIP60(2) <---------AHL20(2)       <---------AHL20(2)       --------->LBD16 -------------------->TaNAC69(2)                   *TSS--------->AHL20(2)      <---------LBD16<------ ----HVH21<-----------STF1    --------->AHL20(2)   <---------AHL20(2)       <-----------GT1 ---------   cgcaggcctcgacacgtcacctagtcgctttatttaatacaactagagtttgttttatttaatacagctatgagttttttacccgcgcaagggaaagata  19375400                                                                               <------ZmHOX2a(2)                                                                        <---------YAB1                                                                      --------->YAB1                                                                     <---------YAB1                                                                   --------->YAB1        <---------ANAC46                                                                   <---------ICU4        <---------ANAC58      ---------->DOF2                                              -------->ATHB1        <---------ANAC58 <-----------GT1                                                  <---------AHL20(2)     --------->ANAC55(2) -->ARR11(3)                                                      <---------ATHB51       <---------ANAC55(2) ->YAB1         --------->AHL20(2)      <----------DOF2           --------->ICU4         <---------ANAC55(1) ---ARR11(3)  --------->TOE2(3)     <-------TEIL                  --------->AHL20(2)   --------->MYB52(1) -->GT1      --------->YAB1  --------->AHL20(2)               <---------RAP2.6(3)   --------->YAB1   atttcaccaaaagaaacataaattacagagattaaacatacactttaacaagtttaatatatgccgaaattattataaacgatcaaacataacgtgttta  19375500                                                                                             --------                                                                                           --------->MYB46(3)                                                                                 --------->WOX13(1)                                                                              --------->ANAC58                                             --------->YAB1        --------->ZAT14  --------->YAB1                                           <---------ARR11(3)      <---------ZAT14 <---------ATHB12                                  --------->YAB1               --------->ZAT6 --------->ANAC46------>MYB83                                --------->AHL20(2)       <---------YAB1       --------->ANAC58------>MYB46(1)   gtacaaacgatttatctcttactatataactcaaaataataccaaaatcatcaaacattttgatagcactatacagaaacactcaatcacaaaaccaaca  19375600                                                          <----------DOF2                                                          <---------DAG2                                                      <---------ZAT18                                                      --------->ZAT18                                                    <---------RAP2.3(3)                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                               --------->CCA1(2)                                               <------ZmHOX2a(2)                                              --------->AGP1                                       <-                                              <---------ARR11(3)                           --------->DEAR3(1)                                              --------->ARR14(2)                           --------->AtMYB61                                            ----------->ARR10                              <---------ALFIN1                                          <---------At4g35610                     <---------ICU4   <-                    xxxxxxxxxxxxxxxx>smallRNA(i)------>ZmHOX2a(2)              --------->YAB1    <---                  <-------TEIL<----------DOF2 <---------ARR14(2)               <--------HAHB4   <----          --------->ANAC58   ------>ZmHOX2a(2)--------->ARR11(3)              <---------YAB1<xxxxxxxx          --------->ANAC58 <---------ARR11(3) <---------AGP1                 <---------ARR11(1) <----          --------->ANAC46 --------->ARR11(3) <-----------ARR10             <---------CCA1(2)<-------   <---------------AGL15  ------->GAMYB   --------->At4g35610        --------->ICU4<---------ARR11(3) --->RAV1(1) ---------->DOF2<------ZmHOX2a(2)<---------CCA1(2)       <---------ATHB51   <---------ALFIN1   tttttcaaaaacaagcaaagttcatcaacgatcttttgctcatgagcagatctgagggcgctttttaggcgataattcgtatcattatctccacctccgg  19375700                                                                                                    <                                                                                                    <                                                                                                 <<<<                                                                                                <----                                                                                               <-----                                                                                              <------NtERF2                                                                                              ------>NtERF2                                                                                             <-------             <---------MYB46(3)                                                              ------>NtERF2             <---------DEAR3(2)                                                              --------            <---------At1g77200                                                            <---------LBD16            <---------DEAR3(1)                                                             --------->At4g35610           <------NtERF2                                                                   <---------At4g35610          ------>NtERF2                                                                ==============      --------->ANAC58                                                             <---------ANAC46 <      --------->ANAC46                                                            <------NtERF2<-----      --------->ANAC58                                                   <---------At4g35610 <xxxxxxx    <---------ALFIN1                                                     --------->ZAT14<---------At4g35610   <------NtERF2                                             <---------DAG2      xxxxxxxxxxxxxxxxxxxx   ----------->HVH21                                         <----------DOF2<---------At4g35610<-----  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------RAV1(1) -----MYB46(1)                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------DEAR3(1) -- -----MYB83<---------MYB52(1)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <------NtERF2<-------- -----P<xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) --------->At4g35610<----- ---GAMYB <-----------HVH21         <---------MYB52(1)   <---------MYB59 <---------ZAT14--------->At4g35610 xxxxxxxxsmallRNA(i)            ------>ZmHOX2a(1) ---------->DOF2        --------->At4g35610<-------- -----MYB52(1)           <---------ALFIN1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ATERF1(1) <- --LBD16 --------->DEAR3(1) <---------ALFIN1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->MYB52(2)   ttggcctcacgccgtcggtgagaactctcacctcctccgtttctctccgattcaaagtgcctactttttctgttctgcagcggcagcgtttgctgcggcg  19375800       <-----------HVH21    <---------ANAC58    <---------ANAC58    ----------->RAV1(2) ---------ANAC58 ---------ANAC58 <<<<<MYB2 ---GAMYB ----ANAC58 --RAP2.3(1) ->LBD16 ===============RAV ---------ANAC46 ----ANAC58 xxxxxxxxxxxxxxxsmallRNA(se3) xxx>smallRNA(si3) ----ANAC46 --------->LBD16                           --------->GLK1(2) ------->MYB52(2)                                    --------->GLK1(1) -DEAR3(1)<---------LBD16 --------->ARR11(3)         <---------GLK1(1) ----DEAR3(1)            <---------CCA1(2)  *TSS >>>>>>>>>TBF1                         --------->DAG2 -RAP2.3(2)--------->LBD16<---------ARR11(3)<---------ANAC46                ------>ZmHOX2a(1) --------MYB46(3)  --------->At4g35610 <---------AtLEC2     --------->REM1(2)        ---------->DOF2   ttgcttgcctgtcccggagtcatcttcatatctctctctctccatggcgaagaagaaatctgtgaagaagtctccgtcctcaatttcaaaagggaagaag  19375900  Previous    Next  AGI:  At5g47810.1    Description:  phosphofructokinase family protein. similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G26270.1); similar to OSIGBa0124N08.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67040.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40470.1); contains InterPro domain Phosphofructokinase-core; (InterPro:IPR015913); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023); contains InterPro domain Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004) Range:  from: 19373582    to: 19375351    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g47815.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 3.0e-38 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus) Range:  from: 19375844    to: 19381154    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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