Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->AHL20(2)                                           <---------MYB59        ----------->GT1                    ------->GAMYB      <---------MYB52(1)                 --------->ANAC58                                          --     <-------GAMYB                       --------->ANAC58                                          <- ------------>AtMYB77              --------->At4g35610                                            <-- ---------->HVH21         --------->At4g35610------>MYB83                                         --- ------DOF2               <---------At4g35610------>MYB46(1)                                     <--- ----ANAC58              --------->GLK1(2)--------->MYB46(3)                         ------>ZmHOX2a(1) ----ANAC58  ---------->DOF2      --------->ALFIN1        <----------DOF2 <---------CCA1(2)   ------>ZmHOX2a(1)   ttgtgacagttagtataaagaagagagaagctgaatgtgctgcaaccaaattaaaactctcttttgagttaagcctatatccaactcctactcttcctag  19370500                                              <---------YAB1                                            --------->YAB1                                        --------->AHL20(2)                                       <---                                        <---------AHL20(2)             <---------DAG2            <---                                  ----------->GT1                    ------>MYB46(1)             <--- ------->ALFIN1          --------->ZAT14--------->AHL20(1)          <---------ALFIN1            <---- --------AtMYB61         <---------ZAT14<---------AHL20(1) --------->ALFIN1                     ----- -------ZAT18  <---------YAB1   <---------ANAC46        <---------AtMYB61                     <------ ------>ZAT14--------->YAB1     <---------ANAC58        --------->DAG2 <----------DOF2  <----------DOF2 --------RAV1(1)--------->YAB1  <---------ANAC58      ---------->DOF2------>MYB83   <----------DOF2   tgtggtccattgtatttatcataagagtaaactcgcttgtaataaattatagtagggaaaggtggaagacccacttttgtttctcactttctttctgttt  19370600                                                                               <---------ARR14(2)                                                                            <---------ANAC46                                                                          <---------MYB46(3)                                                                       <---------MYB46(3)                                                                      <---------TOE2(3)                                                                      <---------YAB1            <----                                                                 <---------AHL20(2)             <---- ---MYB83                                                        --------->AHL20(2)          <------- ---MYB46(1)                                                    <---------AHL20(2) <----------DOF2 ------ANAC46                                            <----------DOF2<---------ANAC58  <---------ARR11(3) -----MYB46(3)        ---------->DOF2    <------ZmHOX2a(1)   <---------AHL20(2)--------->ARR14(2) <-- ---->MYB46(2)     xxxxxxxxxxxxxxx>smallRNA(le3)        <---------ANAC58<---------ANAC58<---------YAB1 ---MYB52(1)   ------>ZmHOX2a(1)  <---------AtLEC2      <---------ANAC58<-------GAMYB --------->YAB1   ggtgagaagttgttttccttatgcaaaagatggaatgcatgaaggacacttgtgtctggctttttatttattttggttgtggatactttcatgatatact  19370700       <---------ALFIN1                                               ---------->ARF1    --------->TOE2(3)         -------->P                            <---------CCA1(2)    --------->AtMYB61 --------->ANAC46                            <---------DAG2 ------DOF2           --------->ANAC58                            --------->TOE2(3) -----DAG2            --------->ANAC58     <----------DOF2     <-----------GT1 ----GT1    <----------DOF2   ------->TEIL<---------ICU4     <-----------GT1 ---------GT1    <-----------GT1       --------->YAB1       <---------ICU4                 <------ZmHOX2a(1)   ttacgacctcaaccctttaataccacacaatctacctccattcatcttttctcttctcttaattttcaccttatctcccaacgagaccatagaggagtta  19370800                             <---------ANAC55(2)                             <---------ANAC58                             <---------ANAC58                             --------->ANAC55(2)                          --------->MYB52(2)  <------                             <---------ANAC46                         <---------YAB1         <-------                         --------->At4g35610                  --------->YAB1                 <-------                         <---------At4g35610                 ----------->HVH21       <---------DAG2XX                        <-----------RAV1(1)             ------>NtERF2--------->AHL20(1)      <-------                    <---------STY1(2)       --------->ZAT6--------->TOE1(2)          <----------DOF2   ctgactccaacttatagctactagctatgctgcgtaactctcttaaacactaccttggcacctatgacaaatatgttagtgagccaacttttctggcttt  19370900                                                                                        ----------->HVH21                                                                                        <------NtERF2                                                                                       <------NtERF2                                                                                       <---------ATERF1(1)                                                                                       --------->LBD16                                                                                     <---------LBD16                                                                                    ------>NtERF2                                                                                <---------O2                                                                             ----------->TGA1                                                                           <---------ANAC55(2)  *TSS>>>>>>>>>>MYB80                                                      --------->ANAC55(2) ----DOF2                                                              ----------->RAV1(1) --ANAC58            <---------TOE2(3)                          <---------LBD16 --------->O2 --ANAC58 ------>MYB83       <---------ANAC55(2)                --------->LBD16 <---------bZIP60(2) XXXXXXXXXXXXXXXXXX>MIR832-3P--------->ANAC55(2)               <---------ANAC46 <---------TGA1a   <-- --ANAC46 ------>MYB46(1)   <-------TEIL                      <---------LBD16----------->HVH21   ----   gattttcaaaccaaacaagtatgaaggaaatacatatcagacaccatttggagacttgagtccatgcggggagcaacaagtgacgaggccgggacccttg  19371000                                                                      <-----------HVH21                                                                     <----------DOF2                                            <---------DAG2     <-----------GT1                                            <----------DOF2  ----------------------->TaNAC69(2)                                         --------->ZAT6     --------->YAB1                         <<   --------->AtLEC2          <---------AHL20(2)             <--------HAHB4                      <<<<< ---------GT1                --------->AHL20(2)             <---------ICU4                  ------>ZmHOX2a(1) ------>ID1                 --------->AHL20(2)             <---------YAB1            <---------------   ttgccattcaactctctctctctcttgggatttaatttcactaacactttatgtcaatttgatcattaccactttcacatctctctctcttctccttctt  19371100                                     --------->ANAC58                                     --------->ANAC46                                     --------->ANAC58                    <----------DOF2                                  <---------ZAT18             --------->YAB1<---------ARR11(3)        <<<<<<<<<TBF1             --------->At4g35610        <---------ATHB12     <<<<<<<<<TBF1          --------->TOE2(3)     XXXXXXXXXXXXXXXXXXXX>MIR842  <<<<<<<<<TBF1           ------->TEIL            ----------->GT1  <----------DOF2 ---------->ID1 <<<<<<<TBF1              -------->P--------->ZAT18--------->At5g28300   <---------DAG2      <------- <<<<TBF1     ------>ZmHOX2a(1)   <---------At4g35610      --------->WOX13(1)  <----------DOF2 <----- ---------ANAC81     <---------CCA1(2)         <---------AtLEC2    ------>ZmHOX2a(1)  <---------MYB52(1)   cttcttcttcttcttcctccctcatatcaacctttgagcacaccagttttcatggtaaaatcaatcatccttttgctttatctttttcgtttttttttct  19371200                                                                                                   <-                                                                        <---------AHL20(2)        ---                                                                       <---------AHL20(1)     <------                                                                       <---------AHL20(2)   <--------                                                                       --------->AHL20(2)   ---------                                                                    --------->YAB1 <-------TEIL  ----                                                                   <---------AHL20(2)       ---------  <----------DOF2                                                 --------->AHL20(2)--------->REM1(1) ----GT1<<<<<<<<<MYB2                                     <------ZmHOX2a(1)     <---------At4g35610<- ------GT1             --------->YAB1                   <---------TOE2(3)       --------->At4g35610--   ctctcttttggttttcagaattgtatcataaacagactacatgtgagtttgtatcatttaggaatacatataataaaatttcagcttcatcaatatgtaa  19371300      ------>ZmHOX2a(1) --------ARR11(3) ------>YAB1              <---------MYB59 ---AHL20(2)              --------->TOE2(3)                    --------->ARR11(3) -ANAC55(2)         <----------DOF2       <---------DAG2       <---------ARR11(3) >ANAC55(2) <----------DOF2     --------->ARR11(1)             --------->AHL20(1) ----->ICU4<---------ANAC58     <---------ARR11(3)          --------->AHL20(2) -->GT1    <---------ANAC58 ---------->DOF2    --------->YAB1 <---------AHL20(2) ----------GT1      <---------DAG2        <----------DOF2   <---------AHL20(2)     --------->ZAT14  < ------->ARR11(3)<---------ALFIN1--------->CCA1(2)       ------->TEIL ------>ZmHOX2a(1)     <------ZmHOX2a(1)   ttatcttcctgtgtctttcccacttttacctaaagatttgatcactttctcatcatatgtatatatatattcctcttgaacgcagagaagtctaggatga  19371400  Previous    Next  AGI:  At5g47790.1    Description:  forkhead-associated domain-containing protein / FHA domain-containing protein. similar to forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G38840.1); similar to hypothetical protein OsI_027774 [Oryza sativa (indica cultivar-group)] (GB:EAZ06542.1); similar to Os08g0326100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061548.1); contains InterPro domain Forkhead-associated (InterPro:IPR000253); contains InterPro domain SMAD/FHA (InterPro:IPR008984) Range:  from: 19368518    to: 19370670    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g47800.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G67900.1); similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G67900.2); similar to putative non-phototropic hypocotyl 3 [Oryza sativa (japonica cultivar-group)] (GB:BAD26466.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210) Range:  from: 19370902    to: 19373526    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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