Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ------>ZmHOX2a(2)                  --------->CCA1(2)                  <------ZmHOX2a(2)                 --------->ARR14(2)                 <---------ARR14(2)                 --------->AGP1                 <---------ARR11(3)                                                                 <                 --------->ARR11(3)                                                                 <     =====================HOX2a_HOX2a                                                             ---     ------>ZmHOX2a(1)                                                                  <----------DOF2     ====================HOX2a_HOX2a                                             <---------MYB52(1)<- ---ZAT6       ----------->ARR10                    --------->YAB1             ------>ZmHOX2a(1)  <--   taaaatccttcttggctaagatctacaagaggcagaagtagtagagacagacaaacataagtctcagccctcaaaaatttcctgttatgtctttgattct  19364700  <------MYB83  ----------->GT1  <------MYB46(1) <---------AtMYB61 <---------DEAR3(1) --------->MYB111(2) --------->MYB46(2) --------->MYB55(2)                                             <----------DOF2 --------->MYB111(1)                                        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------MYB46(3)                   <-----------RAV1(2)------>MYB83 --------P                            <---------LBD16    ------>MYB46(1) ---------MYB55(1)         --------->ZAT14          <-----------GT1  <---------YAB1 --------->YAB1 ------>ATHB12             <---------ZAT14      --------->YAB1  <---------DAG2  <---------YAB1 ------GAMYB               --------->ZAT18     --------->ICU4<---------ALFIN1 <-----------GT1 -------MYB46(3)     <---------MYB52(1)<---------LBD16----------->RAV1(2)  <---------ZAT6      ------   tggttggtgatttgtgtaattctgttaagtgctctgattttcagggggaataataaacctgcctcacttttattcttgtgttacaattgtatttgtttca  19364800                                                  <---------MYB46(3)                                                 <--------P                                                 <---------WOX13(1)                                                <-------GAMYB                                                <---------ANAC58                                                <---------ANAC58                                               <---------MYB46(3)                                               --------->MYB55(2)                    ------->GAMYB                                               --------->MYB52(2)                  ------>MYB83                                               <------MYB46(1)                    --------->MYB52(1)       ------>ZmHOX2a(2)                       <------MYB83                   <---------WRKY18(1)     <---------ARR11(3)                       <---------AtMYB61      --------->ANAC55(2)     --------->ARR11(3)                      <--------P<---------ANAC58    <---------ICU4    --------->YAB1                     --------->GLK1(2)             --------->YAB1------>MYB46(1)   <---------YAB1--------->YAB1       <---------GLK1(2)<---------ANAC58  <---------AHL20(2)  <------- --->YAB1     <----------DOF2  ------->TEIL<-----------RAV1(1)      <-------TEIL  ----------->RAV1(1)   tgactatgatcttcttctttcatcagttatatgaatttgagattcttgttggttgatgcctgtgactacatacataatattgaccaacagaagaagataa  19364900                                                                                              -------                                                                                       ---------->DOF2                                                                                       ==============                                                                                  --------->AHL20(2)                                  --------->ANAC58                              --------->ANAC58                              --------->CCA1(2)                                 ----------->GT1     -       <-------TEIL   --------->ZAT6          <<<<<<<<<TBF1                     --------->ANAC58   --   <-------TEIL <---------AHL20(2)--------->ANAC46                       ---------->DOF2      ======= --ARR11(3)    --------->AHL20(2) --------->ANAC58                       ============================   ctcgatacatacattgattttataacactgagatttaagcaactcttcttcttctctaatgcctacattccattccaaaggcaagaaaataaagcttcaa  19365000              --------->TGA2(2)              ----------->HVH21             <-----------HVH21             <-----------TGA1            --------->bZIP60(2)            =========================bZIP_DOF            --------->ANAC58            <---------O2            --------->ANAC58            --------->ANAC55(1)            <---------ANAC55(2)            --------->ANAC55(2)            <---------bZIP60(1)            --------->ANAC46            --------->bZIP60(1)            <---------TGA1a            --------->TGA1a            --------->O2           <-----------STF1          <---------ALFIN1       --------->bZIP60(2)       ----------->HVH21      <------NtERF2  --------->ANAC58              <---------AHL20(2)  --------->ANAC58             --------->AHL20(1)                          ----------->GT1          - --------->DEAR3(1)   ---------->ID1                          <---------ICU4                      --- --->DOF2<---------REM1(2)<----------DOF2                     --------->MYB52(1)             ------>ZmHOX2a(1) =====================bZIP_DOF <---------AHL20(1)            <---------ATHB51     <------------------ -------->ATERF1(1)  <-----------HVH21                   <---------YAB1  <---------ANAC46   --------- --------------------->TaNAC69(2)       --------->MYB46(3)   <---------AHL20(2)---------->DOF2   ---- =====================bZIP_DOF <---------AHL20(2)      --------->YAB1  --------->REM1(2)    --------- =====================bZIP_DOF --------->AHL20(2)    <-----------TBP  ----------->HVH21     ---------   gcgcaggcctcgacacgtcaccttgtcgcttaatttaatacaacaactagagtttatttataaataatggctgtgaagggtaaaagcgtcttatcctcaa  19365100       --------->YAB1       <---------ICU4    --------->AtMYB61 --------->AtMYB61        <------------CBF -------->MYB46(3)  --------->At4g35610 ---->GAMYB     --------->STY1(2) -----TaNAC69(2)<---------At4g35610 >ANAC46        --------->At4g35610                    --------->ANAC58                             - ----->MYB46(3) <---------ZAT2               *TSS      --------->ANAC58      <---------AHL20(2)     < >TOE2(3)       --------->ZAT2              --------->ANAC46   ---------->DOF2                     <- >TOE1(3)<---------YAB1------------>CBF   <---------ALFIN1 ---------->DOF2  --------->AHL20(2)     <-   cgaccaccatcatcatccagctagcagcaattggtttttcactcacacactagaaacaagaaaaagaaagatgggagatttaatggctcggtctctctct  19365200                                                                                                 <---                                                                                          ===========                                                                                          <------ZmHOX2a(2)               --------->YAB1                                                ====================HOX2a_HOX2a         ------>NtERF2                                                  <---------CCA1(2)--------->ARR14(2)        --------->DEAR3(1)                                          <---------ANAC46--------->REM1(1)     <---------ETT(2)                                           <-------GAMYB------>ZmHOX2a(1)   ----  ----------->HVH21         --------->ANAC58                   <---------MYB46(3)  <---------REM1(2) ------>ZmHOX2a(2)      <---------HSFC1(2)                   <-----------HVH21     --------->ZAT14 -------->At4g35610     --------->HSFC1(2)                  --------->DEAR3(1)     <---------ZAT14  - ---------At4g35610    ----------->ARR10 <----------DOF2 <---------ALFIN1--------->ARR14(2)   <------ --------ARR11(3)   <---------REM1(1) ---------->ID1    ------>ZmHOX2a(1)<---------ARR14(2)   ------- --------AGP1 <---------YAB1--------->ANAC58           <---------ALFIN1 --------->GLK1(1)<---------ARR14(2)   tgatctgacgacgacgatgatggtgaagcttcgcaatcttgttcttttcttcatgctcctcaccgtcgttgctcatatccttctctacaccgatcccgct  19365300   ------>ZmHOX2a(1) ------ATERF1(1)                                                                                ----- =========HOX2a_HOX2a                                                           <----------DOF2 <---- -->NtERF2                                                               --------->YAB1  <---------MYB52(1) ----->NtERF2                                                            <------------------------ANAC81 ---At4g35610  <----------DOF2                                   <---------ANAC58      <---------ANAC58 -->At4g35610 <---------DAG2          <----------DOF2            <---------ANAC58      <---------ANAC58   gcctccttcaagacccccttttgtcagtagttctctctctctttctcaattctccgatttgaaatttgcttcttatcatcttctttgtttcgttctgtag  19365400                                      <---------ARR14(2)                                      --------->ARR14(2)                                     <---------ARR14(1)                                     <---------CCA1(2)                         ------->GAMYB------->TEIL                         --------->DEAR3(1)                        <------------MYB.PH3(1)                        --------->MYB46(3)                      --------->MYB52(1)                      <---------ARR14(2)                      --------->ARR14(2)                                               <-----------TGA1                     ----------->HVH21<---------ARR11(3)                               <-----------HVH21                   --------->ANAC58<---------ANAC58                                   <---------ANAC58                   --------->ANAC58<---------ANAC55(2)                                <---------ANAC58              --------->HSFB2a(2)  --------->ANAC55(2)                                --------->ANAC55(2)            ------>ZmHOX2a(1)      <---------ANAC58                                   --------->bZIP60(1)       <---------GLK1(1)<------------AtMYB77                                          <---------bZIP60(1)       --------->GLK1(1)--------->DEAR3(2)         <---------CCA1(2)    ------>ZmHOX2a(2)       <----  --------->ANAC46 <---------ANAC55(2)<-----------ARR10               --------->ARR11(3)        <---- ---->At4g35610    --------->ANAC55(2)<---------ARR11(1)              <---------ARR11(3)        <---- -----At4g35610  <------ZmHOX2a(1)--------------->AtSPL8         <----------DOF2      <---------ANAC55(2)   ctaaacgcgatttcctcgaggacgtaaccgccttggtccgtatcttcttccctctatctctctctctcttttgatcttcccttccattgcgtcacattgt  19365500                                                                                                    -                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  ---     <----------DOF2                    ------->TEIL            <----------DOF2   --------->ATHB12<-- <-----------GT1                       <---------CCA1(2)   <----------DOF2    --------->ATHB12    <-- -----ANAC58               --------->YAB1                 <---------DAG2    --------->ANAC55(2)  <--- -----ANAC58            <---------At4g35610       <---------LBD16           <---------ANAC55(2) ----- -----ANAC46  <----------DOF2  --------->GLK1(2)  ------>ZmHOX2a(1)      <---------MYB52(1)<---------ALFIN1   gtgtttccttttcagactttcaattccgatgagaatcgtttgaatcttcttcctcgggtaccttttctttttccagttacttattgattcgcctcactca  19365600  Previous    Next  AGI:  At5g47770.1    Description:  FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase. Identical to Farnesyl pyrophosphate synthetase 1, mitochondrial precursor (FPS1) [Arabidopsis Thaliana] (GB:Q09152;GB:Q42573;GB:Q8W504;GB:Q93Y84); similar to FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2), dimethylallyltranstransferase/ geranyltranstransferase [Arabidopsis thaliana] (TAIR:AT4G17190.1); similar to farnesyl pyrophosphate synthase [Malus x domestica] (GB:AAM08927.1); similar to Farnesyl pyrophosphate synthetase 1 (FPP synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase 1) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase Range:  from: 19362399    to: 19364855    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g47780.1    Description:  GAUT4 (Galacturonosyltransferase 4); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups. similar to GAUT1/LGT1 (Galacturonosyltransferase 1), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G61130.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABN08854.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23686.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70213.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) Range:  from: 19365145    to: 19367895    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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