Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            ================================HOX2a_HOX2a                                          ------>ZmHOX2a(2)                 --------->ANAC58                                         <------ZmHOX2a(2)                  --------->ANAC55(2)                                         =================================HOX2a_HOX2a <------MYB83                                        <---------ARR11(3)                  <---------ANAC55(2)                                        --------->ARR11(3)                  --------->ANAC58                                        <---------ARR14(2)                  --------->ANAC46                                        --------->ARR14(2)                 <---------LBD16                                    ---------->DOF2                ------>ZmHOX2a(1)  <------MYB46(1)                                 --------->ANAC58             <---------ANAC58        <---------MYB46(3)             ----------->RAV1(2) --------->ANAC46             <---------ANAC58    <-----------RAV1(1)     ---------->DOF2             --------->ANAC58     <---------At4g35610 <-----------GT1   --------- ---ZmHOX2a(1)              ----------->HVH21   <----------DOF2 ------>NtERF2     --------->ATHB12   gagaactcaaagtttacctgagtaatagaagtgacacccaaagatcggaacttttcagcgtattgcctcctcgattttacggaattgttggtcacaaaga  19361900                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                        ---------->DOF2                                                                    --------->DAG2           --------->LBD16 <------ZmHOX2a(2)                       --------->DAG2         <---------LBD16  --------->ARR11(3)                      ---------->DOF2      <-----------GT1 ---------->DOF2                       --------->ALFIN1   --------->TOE2(3)----- ->DOF2<---------At5g28300<---------ARR11(3)  ---------->DOF2----------->GT1 ------->TEIL   ---------   caacatttttaccctgaaaatcgcaaaagatcagagagagagagactgaaaaggaatagagagtggggaaaagggaaagcaccttagaacggataaggtc  19362000                                                                      --------->At4g35610                                                                      <---------YAB1                                                                    --------->YAB1           --------->ANAC58                                 <---------YAB1           --------->ANAC46                               <---------ICU4     ----------->GT1           --------->ANAC58                               --------->YAB1   <---------ZAT14     ------          --------->ATERF1(1)                            <---------ATHB12  --------->ZAT14<------ZmHOX2a(1) ---->ETT(2)------>NtERF2                     ----------->RAV1(2)   <---------ICU4<---------MYB52(2) >DAG2   <---------ATERF1(1) <-----------GT1  --------->At4g35610--------->WOX13(1) ---------->DOF2   gagagtttgggagacgccatcgatgagcgtttcacccttccatataacacctgaatcgaatcatcatccatcatcagagtagtaactaaagaggataaca  19362100                                                                                                  <--                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                               --------->ETT(2)                                ------                                               <---------ETT(2)                               <------                                             ------->TEIL                                --------->At4g35610                       --------->AtMYB61     --------->ARR14(2)                          ----------->RAV1(2)                     -------->P              <---------ARR14(2)                          --------->ZAT2           ----------->GT1                --------->ANAC58                               <---------At4g35610         ---------->DOF2                  --------->ANAC58        --------->CCA1(2)     --------->GLK1(2) --->MYB46(3)    --------->GLK1(2)     <------ZmHOX2a(1) ---------->DOF2          <------ZmHOX2a(1)   atcgaatggaagaaagtagaatctaccatcgcagtcgaagaggaacgtatcgacagagtcaaagagagatttgaagttactggaggagagaagctgaggc  19362200                                                                            <---------ALFIN1                                                                         --------->ANAC58        <---------ANAC58                                                 --------->ANAC46        <---------ANAC58      --------->LBD16                    ------->PIF5       <------ZmHOX2a(1)     <---------HSFB2a(2)                 <-------PIF5------>NtERF2 ----NtERF2                  --------->HSFB2a(2)                 *TSS    --------->ANAC58 -->NtERF2                  <---------LBD16                     --------->TGA1a ---->ANAC58            <<<<<<<<<TBF1                           <---------TGA1a ---->ANAC58           ============================================================================== ---->RAP2.3(2)        <---------------AGL15                    --------->ANAC58                    < --->RAP2.3(1)         --------------->AGL15      --------->DAG2--------->ANAC58                 ---- --->ATERF1(1)       <<<<<<<<<TBF1               =========================bZIP_DOF       ---------->DOF2 ---ATERF1(1)     <<<<<<<<<TBF1                  ---------->DOF2====================================bZIP_DOF   gccattggaggagtgtcttcttcttcttcttctgggaattgatcactctggtaaagcacaattggcacgtccaaaacgacaccgttccatcgaaagaggc  19362300               <-----------------AGL1               <-----------------AG               ----------------->AGL1               ----------------->AGL2              --------->At4g35610         <------MYB83         <------MYB46(1)                                --------------->AtSPL8       <---------WOX13(1)                            ------->MYC3      <------------CBF                               <-------MYC4     --------->ATHB12   <------ZmHOX2a(1)            ------->MYC2                                  *TSS    <---------YAB1    --------->MYB59                <-------MYC2                                <--- ===============================MADS_MADS    <---------REM1(1)        --------->MYB52(1)         <--- ------------CBF------------>CBF    <-----------GT1  <-------MYC3--------->YAB1             <-------- ------->RAV1(1)<---------------AGL15    <---------TOE2(3)      ----------->TBP    <-----------GT1 --   cacattgtgattggtgagcccaattaggaaggcctattttactaatgttgaagcacatgttgtactataaaaaaacagagtttattatctgtttctttgg  19362400                                                                                                    <                                                                                                   <-                                                                                                 <---                                                                                                 ----                                                       <---------YAB1                         <------                                                    ----------->TGA1                          <------    ----------->HVH21                               ----------->HVH21                    --------->ALFIN1 ------ANAC58                                   <---------ANAC46            <---------TOE2(3) <------ ------ANAC58                                  <---------LBD16      ----------->GT1     <------ZmHOX2a(1) --DOF2                                       <---------ANAC46  --------->DAG2       <-----------RAV1(2) --------->HVH21           ---------->DOF2 <-----------RAV1(1) ---------->DOF2<------ZmHOX2a(1)<-----   cttgacatgacaaatgtacaactgggagagaaagtcagtccgattgtgttggggatgacgatggcaaaagtagtaaataaggaagaaacaggaggggcgt  19362500  --------->LBD16 --------->HSFB2a(2) <---------HSFB2a(2)                                                                      <---------At4g35610 ---------LBD16                                      --------->ANAC58      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------LBD16                              --------->ARR14(2)             <-----------HVH21 ------ARR14(2)                <---------MYB46(3)    --------->ANAC58     --------->TOE2(3) ----->ARR14(2)         <---------ZAT6      <---------ARR14(2)          <---------ARR11(3)--------->At4g35610 ---ANAC58          <---------YAB1          --------->GLK1(2)    --------->DAG2          ------->TEIL ---ANAC58       ---------->TaMYB80        <---------GLK1(2)   ---------->DOF2    --------->ATHB12 ---ANAC46     <------ZmHOX2a(1)     <---------REM1(1)      --------->YAB1--------->TOE1(3) -----DOF2  <------ZmHOX2a(1)<-------GAMYB<------ZmHOX2a(1) --------->AHL20(2) --------->ANAC46   tttcgggagaagaaggaggaatatgagtgtgagttgttgttgtaggaatctgggcaagacaataaaaaaggcaataccttcacatcatttgcatctgaga  19362600                                   <---------ARR11(3)                                   --------->ARR11(3)                               ---------->DOF2                   <---------DAG2                           <---------ARR14(2)               --------->WRKY18(1)                           --------->ARR14(2)             --------->ANAC58                          <---------CCA1(2)               --------->ANAC58                       <------NtERF2                  ------>ZmHOX2a(2)                     <---------DEAR3(1)              <------ZmHOX2a(2)     --------->TOE2(3)   ------   agtcttggtgggagtctctatcgtcgtcgtatccaaagctcttcaatggagaccgatctcaagtcaacctttctcaacgtttattctgttctcaagtctg  19362700                                                                                =====================                                                                                ------>ZmHOX2a(2)                                                                               ======================                                                         <---------CCA1(2)     <------ZmHOX2a(2)                                                         <---------GLK1(1)    <---------ARR14(2)                                                        <---------MYB52(1)    --------->ARR14(2)                                                     ------>ZmHOX2a(2)   <-----------HVH21     ------                                  ------->TEIL  <--------P              --------->WOX13(1)    -------       ----------->HVH21       <---------ATHB12<-------GAMYB        --------->YAB1----------->RAV1(1)     <---------ICU4      <-----------GT1   <---------LBD16<---------ARR14(2) <---------At4g35610 ----->HVH21          --------->ARR14(2)<---------CCA1(2)--------->GLK1(1)   --------->At4g35610   accttcttcatgacccttccttcgaattcaccaatgaatctcgtctctgggttgatcgggtatctctctctcatcagtcagatcccacatatatatcctt  19362800  Previous    Next  AGI:  At5g47760.1    Description:  ATPGLP2/ATPK5/PGLP2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 5); phosphoglycolate phosphatase/ protein serine/threonine kinase. similar to phosphoglycolate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT5G36790.2); similar to ATPGLP1/PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) [Arabidopsis thaliana] (TAIR:AT5G36700.2); similar to ATPGLP1/PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1), phosphoglycolate phosphatase [Arabidopsis thaliana] (TAIR:AT5G36700.1); similar to unknown [Populus trichocarpa] (GB:ABK96026.1); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain 2-phosphogly Range:  from: 19360110    to: 19362265    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g47770.1    Description:  FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase. Identical to Farnesyl pyrophosphate synthetase 1, mitochondrial precursor (FPS1) [Arabidopsis Thaliana] (GB:Q09152;GB:Q42573;GB:Q8W504;GB:Q93Y84); similar to FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2), dimethylallyltranstransferase/ geranyltranstransferase [Arabidopsis thaliana] (TAIR:AT4G17190.1); similar to farnesyl pyrophosphate synthase [Malus x domestica] (GB:AAM08927.1); similar to Farnesyl pyrophosphate synthetase 1 (FPP synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase 1) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase Range:  from: 19362399    to: 19364855    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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