Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <------ZmHOX2a(2)                                                                                       <---------GLK1(1)                                                                                      <---------ARR11(3)                    ----------->HVH21                                <---------At4g35610           --------->ANAC46                     --------->ANAC46 --------->GLK1(2)    --------->ARR11(3)           --------->ANAC58                    <---------At5g28300   --------->At4g35610------>ZmHOX2a(2)           --------->ANAC58        <---------ANAC58          --------->ANAC55(2)<---------ANAC58       ------>ZmHOX2a(1)           <---------ANAC58          <---------ANAC55(2)<---------ANAC58   cttggactcctgtaagccatagatgacaaggtgaagtgcttctcccattcaccgcatagcaatacataatctgctgaacgaggcttgagatctcagactc  19334300                                                                                              ------>ZmHOX2a(2)                                                                                              =======                                                <----------DOF2                              ========                                      <-----------GT1                                        --------                                  <----------DOF2                                            <------ZmHOX2a(2)                                 ------>ZmHOX2a(2)                                      =============HOX2a_HOX2a                                <------ZmHOX2a(2)                                 ==================HOX2a_HOX2a                               --------->ARR11(3)                                 ===================HOX2a_HOX2a                     <---------ARR11(3)---------->ID1<---------ANAC58             ------>ZmHOX2a(1)     --------->At4g35610       <---------ARR11(3)    <---------ANAC58<---------CCA1(2)  ------>ZmHOX2a(1)   agacatgagatgagcaaaatcaacatctactacgatcttttgacctatttctttagcttgattcagcctctctatcttcttctccttctcctccgatctc  19334400                            ------>ZmHOX2a(1)                       --------->MYB52(2)                  --------->DEAR3(1)                               --------->SPL7                --------->At4g35610                             <---------ANAC46                --------->LBD16                                 <---------ANAC58                <---------At4g35610                             <---------ANAC58          ------>ZmHOX2a(1)              <---------LBD16                                <---------MYB52(1)          --------->TOE1(3) ==================HOX2a_HOX2a                              <-----------HVH21            --------->TOE2(3) ==================HOX2a_HOX2a                             --------->ANAC46    <---------ANAC58 ->GLK1(1)  ------>ZmHOX2a(1)                            ------>ZmHOX2a(1)     <---------ANAC58 <----   ttctccattctctccttccgcagactcttcctcgactcaataagcttcagcctctcttcctccgtcgcgttcgctagggtttcttcccattccttaagct  19334500                                                                              --------->At4g35610                                                                              --------->ZAT2                                                                              <---------ZAT2                                                                              <---------At4g35610                                                               ------->TEIL <-----------RAV1(2)                                                               --------->ARR14(2)                                                               <---------ARR14(2)                                                               <-----------ARR10                                               --------->ZAT2  <---------ARR11(1)                                               --------->At4g35610        <-----------HVH21          <------------------------ANAC81      <---------At4g35610   <---------At4g35610          <----------DOF2       ------>ZmHOX2a(1)             <---------CCA1(2)       ------>ZmHOX2a(1)      ----------->RAV1(2)<----------DOF2  <----------DOF2                   - ------DOF2               ------>ZmHOX2a(1)    <---------ZAT2 <---------ARR14(1)       <---------At4g35610   ttctctctccttcttttctcttatgctccttctcctgtgccttcttctcagctttcttcgcttcgtatctttgctgcttcagctgcttcttctgagcatt  19334600                                                                                      <------NtERF2                                                                                     ------>NtERF2                                                                                    <---------ATERF1(2)                                                                                    --------->RAP2.3(3)                                                                                    --------->DEAR3(1)                                                                                    --------->DREB2C(2)                                                                                    --------->ATERF1(2)                                                                                    --------->RAP2.3(2)                                                                                    --------->RRTF1(2)                                                                                    --------->ANAC46                                                                                   --------->DEAR4(2)                                                                                   --------->RRTF1(1)                                                                                   --------->ERF1                                                                                   --------->RAP2.6(1)                                                                                   --------->ATERF1(1)                                                                                   --------->ORA47(2)                                                                                   <------NtERF2                                                                                   --------->RAP2.3(1)                                                                                  <---------DREB2C(1)                                                                                  --------->ABI4(1)                                                                                  <---------ATERF1(1)                                                                                  <---------DEAR4(2)                                                                                  <---------RAP2.3(1)                                                                                  ------>NtERF2                                                                                  --------->At4g35610                                                                                 --------->DEAR3(1)                                                                                 --------->ATERF1(2)                                                                                 <---------DEAR3(1)                                                                                 --------->ANAC46                                                                                 <---------ATERF1(2)                                                                                 --------->RAP2.3(3)                                                                                --------->ORA47(2)                                                                                --------->ERF1                                                                                --------->DEAR4(2)                                                                                <------NtERF2                                                                                --------->ATERF1(1)                                                                                --------->RAP2.6(1)                                                                                --------->RRTF1(1)                                                                                --------->RAP2.3(1)                                                                               <---------ATERF1(1)                                       --------->GLK1(2)                       <---------RAP2.3(1)                                      --------->ARR14(2)                      <---------DEAR3(1)                                  <-------TEIL                    <-----------TGA1<---------At4g35610                               <---------DEAR3(2)                <---------bZIP60(1)--------->RRTF1(3)                             <------NtERF2                       --------->ETT(2)--------->RAP2.3(2)                   --------->DOF5.7(2)<---------ARR14(2)         --------->bZIP60(1)--------->RAP2.6(2)                  --------->TOE1(3)   <---------GLK1(2)         ---------->ID1--------->DEAR3(1)           <------NtERF2    ------>NtERF2                  <---------MYB46(3)--------->ATERF1(1)         --------->ALFIN1   --------->ABI4(2)         <---------At4g35610   <-----------HVH21 -------         <---------DEAR3(1)--------->ALFIN1           --------->At4g35610   <---------ATERF1(1)    --   <-----------RAV1(2)     ----------->HVH21 <----------DOF2 <---------MYB52(1)------>NtERF2  ------>NtERF2 ---------->HVH21 --------->TOE2(3) ----------->ARR10 --------->ZAT2       --------->ANAC46 <--------   cttcgacaggggaggcgaaacgttaaccggtgccggttcagattctggtttatcgaagcagccgttgtcgtcatttcccgtcgccgccgccattgccgcg  19334700                                                                <---------bZIP60(1)                                                                <---------O2                                                                --------->TGA1a                                                                =====================================                                                                --------->O2                                                                <---------TGA1a                                                                --------->bZIP60(1)    ---------->DOF2                                     --------->YAB1 --------->ANAC58                                     --------->ANAC58 --------->ANAC58                                     --------->ANAC46 -->LBD16                                             --------->ANAC58 -------->DOF2             ----------->GT1         --------->ZAT14            --------->ZAT6 -LBD16          ---------->DOF2                *TSS<---------ALFIN1<---------DEAR3(2)         ------   agaaagcaaagcgagagagcaaagaagaagggtcaaaaaactaaaattgaaactccactcaaaacgacgtcggtattcttacactaatgggcctggatgt  19334800        <---------ANAC58        <---------ANAC46        <---------ANAC58                    ----------->GT1       ------>NtERF2                     --------->DAG2   --------->DAG2                   <----------ID1                      ------------>CBF  --------->DAG2                   ----------->GT1                 <---------PCF5 ---------->DOF2                  ----------->GT1          --------->DAG2 ===========bZIP_DOF         <---------TOE2(3) ---------->DOF2--------->ALFIN1 --------->AHL20(2)<--- ----->GT1----------->GT1<----------DOF2---------->DOF2   ---------->DOF2    --------->AHL20(2)<-----   ttaaaaaggggcctgttaaacgatgggctttaagaatggggaaaaagggtaaagagaagagaaagtgagggaccatcaatataaaataagagaaaatgag  19334900                                                                                <----------DOF2                                                                               <---------ANAC58                                                                          <-----------RAV1(1)                                                                          <---------O2                                                                          --------->ALFIN1                                                                        --------->At4g35610                               --------->At4g35610                   ================================                               <---------ZAT2                        <------ZmHOX2a(2)                         --------->SPL7                            --------->At4g35610                     <------NtERF2                            <---------At4g35610    <<<<<<<<<TBF1  <                    <---------RAP2.6(3)                       --------->At4g35610  <----------------- ---ZmHOX2a(1)     --------->DEAR3(1)     *TSS                <---------ZAT2   <---------ANAC58 ----- ----TOE2(3)  ---------->DOF2  <---------At4g35610 <---------ZAT6  <---------At4g35610  <<<<<<<<<TBF1   gaagcgatgagagacacaaagccgtcgtaagtcagctaatcggggctcttgttgtgttagagagagctcagatcagatgtggctttcttcttcttctcct  19335000                                                                                        --------->At4g35610                                                                                        --------->ZAT2      --------->LBD16                                                          <---------CCA1(2)     <---------ANAC46                                                      <---------ANAC58    <---------LBD16                                                   <-----------RAV1(1)<---------GLK1(2) ==HOX2a_HOX2a                            <-----------GT1<---------ANAC58  <---------ANAC46 <<<<<<<<TBF1                         --------->AHL20(2) <---------ANAC58  <---------ANAC58 -------ANAC81                --------->KAN4(1)<---------DAG2    <---------MYB52(1)----------->HVH21 ->ZmHOX2a(1)               <---------GLK1(2)  <----------DOF2  ----------------------->TaNAC69(2)   tcttcttccgcatagtgactctgagaaccagattattcaagaaaataccctttttgtttccttgttcgtttattgtggctcgtctctaacagcttcggtt  19335100                                                                           <---------ZAT2                                            --------->At4g35610           ------>MYB83                                           ----------->GT1                ------>MYB46(1)                                       =============================HOX2a_HOX2a ------>ZmHOX2a(1)                                       <------ZmHOX2a(1)          <---------ANAC58                                    <------NtERF2            ------>ZmHOX2a(2)----------->RAV1(2)                                   --------->LBD16           ==========================HOX2a_HOX2a                             <---------At4g35610     --------->At4g35610<---------MYB59               --------->ANAC46  <---------LBD16     --------->ZAT2    -------->ZAP1             <-----------GT1 --------->At4g35610     <---------ZAT2  <---------WRKY18(1)      -------    <---------ZAT14        <-----------RAV1(2)  ---------->DOF2   <---------ANAC58           <-------TEIL   taagagttctctgtttcactccccatggctcagaagccggaggaacagttgaaagagctgggatcgaagcttgacctagctcctgtttctaaagattcat  19335200  Previous    Next  AGI:  At5g47680.1    Description:  RNA binding / tRNA methyltransferase. similar to hypothetical protein [Vitis vinifera] (GB:CAN75735.1); contains InterPro domain tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); contains InterPro domain tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009); contains InterPro domain tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653) Range:  from: 19333358    to: 19334748    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g47690.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT1G77600.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75734.1); similar to hypothetical protein 26.t00005 [Brassica oleracea] (GB:ABD64989.1); similar to HEAT [Medicago truncatula] (GB:ABN05881.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024) Range:  from: 19334942    to: 19344560    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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