Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->DAG2     ---------->DOF2 ---------------------WRI1                                    --------->ALFIN1 --->ZmHOX2a(2)                                             <---------ZAT2 ----->CCA1(2)                                              <------MYB46(1) ---ZmHOX2a(2)                                              <------MYB83 ---->AGP1                                                 <---------AtMYB61 -----AGP1                                                 --------->DAG2 -----ARR11(3)                                         --------->ANAC58 ---->ARR11(3)                                         <---------ANAC46 ---->ARR14(2)                                         --------->ANAC58 -----ARR14(3)                                       --------->MYB52(1) -----ARR14(2)                                      ----------->HVH21 ---->ARR14(3)       --------->ALFIN1               ----------->TGA1            <---------ZAT14 ---->ARR10        <---------O2                <------ZmHOX2a(1)                --------->ZAT14 ->DOF2        <------ZmHOX2a(1)         <---------YAB1<---------ANAC55(2) ----------->RAV1(2)   tctgcgaaaaagtgtaaggagaagtgggagaacatgaacaagtactataggagagtgacggaaggtgggcagaaacagcctgagcacagcaagactcgct  19331800                                                 ----------->GT1                                                 <----------ID1                                       <---------LBD16                                      <---------LBD16                             <---------ARR11(3) ----------->GT1        <---------AHL20(2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->AHL20(2)   --------->ANAC46                       <-----------GT1------>ZmHOX2a(1)           --------->ARR11(3)       --------->ANAC58                    <---------ICU4<---------ARR14(2)              <---------ARR11(3)       --------->ANAC58  <----------DOF2  --------->ICU4 --------->ARR14(2)     --------->ATHB12    <---------TOE2(3)  -----   catactttgagaaacttggaaatttttacaagaccatttcctcgggagagagggaaaaatgagtgaaagattttaaatttaggtgtttttggcacgcaaa  19331900                                             <---------ANAC46                                      --                                          <----------DOF2                                    <-------TEIL                                       --------->ARR11(3)                                 --------->HSFC1(2)               --------->ATHB12        <---------ARR11(3)   --------->AHL20(2)            --------->HSFB2a(1)               <---------ICU4         <---------CCA1(2)     <---------AHL20(2)            <---------HSFC1(2)            <---------At4g35610   --------->AHL20(2)    <---------AHL20(2)                <---------HSFB2a(1)    <---------ARR11(3)           <---------ICU4         <---------YAB1               <---------HSFB2a(2)    --------->ARR11(3)       <---------AHL20(2)   ----------->GT1                    --------->HSFB2a(2) ---->MYB52(1)<---------YAB1 --------->AHL20(2)<---------REM1(1)       --------->ANAC46  <-----------   acgggagaacttgtagatgattacctcgagtttaatttttatatctttggtgtagtttataatttaaaactctacggctctgtatttgtagaaggttcga  19332000                                                                     <-----------HVH21                                                                  ------>ZmHOX2a(1)                                                                ------>ZmHOX2a(2)                                                               <------ZmHOX2a(2)                                                              --------->ARR11(3)                                                              --------->ARR14(2)                                                              <---------ARR11(3)                      --------->ATHB12                        <---------ARR14(2)                      <---------MYB46(3)                    <---------HSFB2a(1)             <-------MYC3               <---------MYB52(1)                           --------->HSFB2a(1)             ------->MYC3          <---------ARR14(2)                                <---------HSFC1(2)             <---------O2          --------->ARR14(2)                           ===============HOX2a_HOX2a          --------->O2    <----------ID1 <---------ANAC46                    <------ZmHOX2a(1)                 <---------ALFIN1  ---------->DOF2  <---------ANAC58  --------->RAP2.6(3)    --------->HSFC1(2)         ------>NtERF2 ------->AHL20(2)  <---------ANAC58 --------->MYB52(1) ================HOX2a_HOX2a<---------YAB1 ----AtSPL8 <-------TEIL<---------WOX13(1) --------->MYB52(1)<------ZmHOX2a(1)  <---------ICU4   ataaaaaagacaaatacgttggggtgattgggattttgtaacggctaagggagacgaggagaaggatcctcggtcacatcgattatggctgccacgttgt  19332100                                                  <----------DOF2                                        --------->ZAT6  ------------>CBF                    <---------YAB1    ----------->RAV1(1)   <---------ATHB12    <-----------HVH21      ----------->HVH21      <---------DAG2  <----------DOF2   tgaacttgtgaggtctgaaattacaaatgctgacacttgccaacactattagctttattccaattactctttcttctctctcattccattctcttcttca  19332200                                                                                                <----                                                                                                -----                                                                                          ------->MYC3                                                                                          ------->MYC2                                                                                          <-------MYC2                                         <----------TaMYB80                               <-------MYC3                          <---------ICU4 --------->KAN4(1)                               <---------ANAC46                          --------->YAB1 --------->GLK1(1)                        --------->CCA1(2)                         <---------YAB1 <---------KAN4(2)                        <---------ARR14(2)                         --------->ICU4 --------->ARR11(3)                       <---------ARR11(3)                    ----------->GT1     <---------ARR11(3)                       --------->ARR14(2)                    <---------MYB46(3)  <---------ARR14(2)                       --------->ARR11(3)                 <------------CBF       --------->ARR14(2)                 --------->ANAC58     -----            <---------ANAC46     <---------AHL20(2)         <---------ANAC58     --------->ARR11(1)            <---------ANAC58   <-----------TBP              <---------ANAC58   ----------->ARR10-----            <---------LBD16  --------->AHL20(2)             <---------ANAC46 ---------->DOF2    <----            <---------ANAC58<---------YAB1       *TSS  ---------->DOF2     --------->ANAC58--------->ALFIN1   aatgcttcttaatttcgggcattggttattattatttatagggatattcacaaacacaaaagtcgtgtatttagaacaagaaagatatggaacgtggagg  19332300                        --------->REM1(2)                      --------->LBD16                     <---------ANAC58               <---------At4g35610        -------->P   <---------ANAC58 <---------AtLEC2 <-----------HVH21 -----HSFB2a(1)--------->At4g35610          --------->ANAC46 ---->HSFB2a(1)--------->ZAT2          ------>ZmHOX2a(1) ---->ATERF1(1)<---------ZAT2    --------->AtMYB61     <---------ZAT18         <-----------GT1     <- ---->HSFC1(2)--------->ANAC58   <---------ALFIN1  --------->ALFIN1        <----------DOF2         <- -----HSFC1(2)--------->ANAC58--------->ANAC46 <-----------RAV1(2)      <---------ALFIN1           --   cttccatggctaccgcaagctgtccgtgaacaacaccactccttctccaccaggtagtgccattctctataccccctcttttcacaggctctcttcattt  19332400       --------->ANAC46                               <---------AtLEC2   <---------ANAC58                         <---------ZAT14                    <----------DOF2   <---------ANAC58                         --------->ZAT14                   <---------ANAC58   <---   <---------ANAC46                       --------------->AtSPL8              <---------ANAC58   ---- --------At4g35610                 <-----------HVH21  --------->YAB1   --------->AHL20(2)    <------- ------GAMYB                 >>>>>>>>>>>>>>>>>LFY <----------DOF2    <---------TOE2(3) --------->TOE2(3) ------->At4g35610   --------->ZAT14      --------------->AtSPL3----------->GT1======================   cagttgcatgcgaaaccattctctgcaatccctccattgtcatgtctgtactcttttcatgacgaacagttaatgaaatagcttttcaatcttataaacc  19332500                 --------->ANAC58          --------->TGA2(2)         <-----------TGA1         <-----------HVH21        <---------TGA2(1)        --------->TGA1a        --------->bZIP60(2)        --------->ANAC46        --------->ANAC58        --------->ANAC58                                                              <------NtERF2        <---------TGA1a                                                               --------->At4g35610        <---------bZIP60(1)                                              --------->HSFC1(2)        --------->O2                                                     <---------HSFB2a(1)        --------->bZIP60(1)                                              --------->HSFB2a(1)       <-----------STF1   <---------ZAT18                   <------ZmHOX2a(1) <---------YAB1      <-- ------LBD16     --------->ANAC46                          <---------YAB1<---------HSFC1(2)       <-- ----->LBD16     --------->ANAC58                       <<<<<<<<<MYB98  --------->ARR14(2)--------->ZAT18 ----GT1<---------O2  --------->ICU4              <---------YAB1 --------->At4g35610  <---------At4g35610 =================bZIP_DOF--------->ZAT18      --------------->AGL15    <---------ARR14(2)<---------ZAT18   gcgcatgcagacgtcatcgaagccattatgcactaaaacttccatttttcttatttttgttaggattagcagcgaattttctgatggcagagggcagtat  19332600                  ------>MYB46(1)                    --------->ZAT18                  ------>MYB83                       --------->ZAT14             <-----------GT1                     <------ZmHOX2a(1)                                  -         --------->GLK1(1)                    <------ZmHOX2a(1)                                     -      --------->LBD16  >>>>>>>>>MYB98     <---------ANAC46                                          <     <---------HSFB2a(2)               --------->ALFIN1                                             -     --------->HSFB2a(2)            --------->ICU4   <---------ZAT18 --------->ANAC58               -   ------>ZmHOX2a(1)  --------->MYB52(1)<---------MYB46(3) --------->ALFIN1                        <- -------ANAC58  ------->GAMYB       <-----------RAV1(1)   <-----------HVH21  <-------TEIL         --- -------ANAC58 --------->MYB46(3)   <---------AtMYB61<---------ZAT14 --------->ANAC58        --------   gcgtcctccagaattcaaccagcctaacaaaaccagtaatggtggtgaggaggagtgcacggtgagggagcaagacaggttcatgcctattgccaacgtg  19332700  Previous    Next  AGI:  At5g47660.1    Description:  DNA-binding protein-related. similar to AT-GTL1 (Arabidopsis thaliana GT2-like 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G33240.1); similar to DNA-binding protein -related [Brassica oleracea] (GB:ABD64988.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005) Range:  from: 19330234    to: 19331862    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g47670.1    Description:  CCAAT-box binding transcription factor family protein / leafy cotyledon 1-related (L1L). Identical to Nuclear transcription factor Y subunit B-6 (NFYB6) [Arabidopsis Thaliana] (GB:Q84W66;GB:Q8GV55;GB:Q9FGJ0); similar to LEC1 (LEAFY COTYLEDON 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G21970.1); similar to leafy cotyledon 1-like L1L protein, putative [Brassica oleracea] (GB:ABD64986.1); contains InterPro domain Transcription factor, NFYB/HAP3, conserved site; (InterPro:IPR003956); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Transcription factor, CBFA/NFY Range:  from: 19332249    to: 19333395    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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