Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <------ZmHOX2a(1)                                                                                        <-----------RAV1(2)                                      <----------DOF2                                 <---------PCF2                                     <---------ANAC58                              --------->ALFIN1                                     <---------ANAC46                        --------->HSFB2a(2)                                     <---------ANAC58                        <---------HSFB2a(2)                                <-----------RAV1(1)       <---------ANAC46--------->ARR14(2)                        --------->ANAC58                <---------ZAT14   --------->ARR11(3)        - --->HSFB2a(2)          --------->ANAC58    <------ZmHOX2a(1)       --------->CCA1(2)----------->HVH21 ----HSFB2a(2)---------->DOF2   <---------REM1(1)       --------->ZAT14   <---------ARR11(3)  <------ZmHOX2a(1) --DOF2  --------->AHL20(2)     <---------bZIP60(2)    --------->ALFIN1   <---------ARR14(2)---------   gaaaaacaagattaaaaaaagaagctaagcattgatgtggcttgaaggagtttcagagtgttgtgagaagatagaagttctgcaagtgggacaggaggag  19318700                       --------->ANAC46                       --------->ANAC55(1)                    <-------TEIL                   --------->CCA1(2)                  <---------ARR14(2)         <---------------AGL15                                                             --------->ANAC46        <-----------------AGL3                                                             --------->ANAC58        ----------------->AGL3                                                             --------->ANAC58        <-----------------AGL2                                                             --------->AtLEC2 -------->REM1(2) --------->ARR14(2)    --------->ZAT2             <----------DOF2       ---------->DOF2 >ALFIN1----------------->AGL2         --------->AtLEC2 <---------ALFIN1              <---------ETT(1)   cgagtagagagccatttgtggatacacttaacatggaaaccatgctgacatttctccagcacttgaatgctttctccttgttcaaattccgacaagcaaa  19318800                                                                                          <----------                                                                                    <-----------RAV1(2)                   ------>ZmHOX2a(1)                                         <---------ZAT2              --------->At4g35610                                            --------->ZAT2   <------              <---------ZAT2                                                 --------->At4g35610              <---------At4g35610                               <---------ANAC46--------->At4g35610          <-----------HVH21      <---------DEAR3(1)   <------ZmHOX2a(1)   <---------At4g35610 <------        --------->At4g35610    <-----------HVH21 <---------REM1(1) <---------MYB46(3)   <-----------HVH21  <---------ALFIN1--------->TOE1(2)<------NtERF2 --------->ALFIN1 --------->ALFIN1<----------DOF2 <---------ZAT18 ----------->RAV1(2)  <------ZmHOX2a(1)   <---------MYB46(3) <---------At4g35610  <--   tggcacactctgcttcagctcctgcgagttcaaggtcggaggagtagacaagtgtaggagttgttggagtggatgaagcagctgcttcagggtcaggctt  19318900                                   --------->MYB52(1)                                --------->ANAC58                           <------NtERF2                         <---------DEAR3(1)                         --------->ETT(1)                      <------MYB83<----------ID1                      <------MYB46(1)                      <---------MYB46(3)                     --------->MYB59                     --------->MYB111(2)                     --------->ZAT18           --------->YAB1                     --------->MYB111(1)                     <---------ZAT14         --------->ANAC58                     --------->MYB55(2)                      <---------ZAT18         --------->ANAC58 -RAV1(2)            <---------MYB46(3)        <---------ANAC46                 ----------->HVH21 ---ANAC58           <---------AtMYB61        --------->At4g35610        <---------ZAT14 ---ANAC58          <--------P---------->DOF2 <---------At4g35610        <---------At4g35610 -------AtMYB61    <-------GAMYB--------->ANAC58  ---------->DOF2        --------->At4g35610    <----   gtggtcgtcttcagtctcgagggttggtcggagaaagcaacgaattgcagcgtaaagagagagagcacaaatgagagcagagatgacaaggatgagaagg  19319000                                                                                 --------->At4g35610                         <---------ZAT6                                       <---------At4g35610                     --------->At4g35610                                      <---------ZAT2                     <---------At4g35610                                      --------->ZAT2    <----                <---------bZIP60(1)                            <---------ANAC55(2)              <----                --------->bZIP60(1)                           <-------TEIL    --------->At4g35610              <---------ZAT14                         <---------YAB1         ----------->RAV1(1)-----         <---------At4g35610                       --------->ICU4<-----------RAV1(1)        <--------         --------->At4g35610                --------->At4g35610<---------ANAC55(1)        --------->YAB1 --ZmHOX2a(1) --------->ZAT14               <---------At4g35610--------->ANAC55(2)  <------ZmHOX2a(1)   actgatgcattagctgtgaagtcagtagagtttgagtaaggcttccatctgcaagtatgagagttacatgttggagttgcagcagaggacaatggtgaag  19319100                                                                              <---------ZAT14                       ==================================bZIP_DOF             --------->REM1(2)                       <----------DOF2                                     <---------ANAC46                      ======================================================MADS_MADS                    ------->TEIL                          --------->ARR11(3)  --------->ZAT14     <---------At4g35610                                  <---------ARR11(3) --------->ALFIN1    <---  <---------At4g35610 <-----------------AGL3   <---------TGA1a            <------ZmHOX2a(1)   <------ -----At4g35610  --------->ANAC58              --------->TGA1a   ---------->DOF2              <------ -----ZAT2       --------->ANAC58              <---------O2 --------------->AGL15             <------ ---->At4g35610  --------->ANAC46              --------->O2 ========================================= -REM1(1)      --------->MYB52(1)      *TSS    =============================bZIP_DOF------------>CBF   ctgcttctgctactagcaaacgcatcttttaatggtttgagagagagcctcgtgagaagagaccttataaaggagaggagtgtagggacaatagtggcgc  19319200                                                      ===============================================    --------->ZAT14                               ---------->ID1    <---------ZAT14                             <---------ANAC58    <---------ZAT18                             <---------ANAC58   --------->ALFIN1                        <---------MYB46(3)          --------->ZAT6            ---- -------DOF2      <-----------HVH21        <------MYB83            --------->At5g28300           ---- ---ANAC46     <---------ZAT2              <------MYB46(1)        ----------->GT1              <----- ---ANAC58     --------->At4g35610      <------ZmHOX2a(1)      <------ZmHOX2a(1)              <------ ---ANAC58     <---------At4g35610<------ZmHOX2a(1)   --------------->AGL15                   ------- =====================================================================MADS_MADS        <----------DOF2   ttccagtggagtcttgaagctgtgagagagtttgaaggattaggatggtttcgtctctattttgaggactgtaacactcgcttctctctcttttggtcca  19319300                                                                                            ---------                                                                                            ---------                                                                                         ------>ZmHOX2a(1)                                                                                     <---------SPL7                                                                                 --------->ANAC58   --------->TOE2(3)                                         <---------YAB1      --------->TGA1a  <---------------AGL15                                    --------->YAB1        <---------TGA1a <-----------------AGL3                          <-----------RAV1(1) ------->MYC3--------->bZIP60(2) =================MADS_MADS                      ------>ZmHOX2a(1)   <-------MYC3<---------O2 ----->bZIP60(2)        <---------MYB46(3)<----------DOF2 <---------YAB1         --------->O2 ----->ANAC46  --------->ATHB12           =================================================bZIP_DOF ----ALFIN1    --------->ATHB51       <----------DOF2 <---------ANAC58           --------->ANAC46 ---ZAT18     <---------YAB1         <---------ANAC58 <---------ANAC46           --------->ANAC58 -->ZAT18     <---------AHL20(2)     <---------ANAC58 <---------ANAC58         <---------ALFIN1   cttcacattaatggatattattgcgatggatgagggattgctttctttgtcctgtggcttatcatcatccacatgtttgccacacgtcgtcctcacacta  19319400  <---------ANAC46                                                           <---------YAB1  <---------ANAC58                                                      <---------At4g35610     -----  <---------ANAC58                                            --------->CCA1(2)            <--------- >ZAT6                         <---------AHL20(2)            --------->ARR11(3)          ---------->DOF2 >ANAC46                 <----------DOF2    <---------YAB1   <---------ARR11(3)---------->DOF2  -----   cgttgcctacattctaggcaaattgctctttttttaattcgttttcatgtttgaatttgtcaatatatggatttagatgataaaagagagagaaagacaa  19319500                                                                   --------->TOE1(3)                                                                   --------->TOE2(3)                                                                 <---------TOE1(3)                                                                 <---------TOE2(3)                                                                 <---------------------WRI1----------                                        --------->ANAC58        <---------DOF5.7(2)        <--------- ---->ANAC58                 <----------DOF2          <----------DOF2                     ----------- -ID1    --------->ANAC46---------->ID1 --------->ANAC58      --------->DOF5.7(2)<----------ID1 ---->ANAC58         <----------DOF2   --------->WOX13(1)    <----------DOF2 ---------->DOF2      ---   gaacaaaatacacttcattgtttctttgtctctttttatatcactcaagtttacatcttttttctttaacgataaaaacaaaagaaacaaaaccccaaat  19319600  Previous    Next  AGI:  At5g47610.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL5M precursor (ATL5M) [Arabidopsis Thaliana] (GB:Q9FGJ6); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G17245.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein [Brassica oleracea] (GB:ABD64996.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 19318414    to: 19319139    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g47620.1    Description:  heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative. similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT3G07810.1); similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT3G07810.2); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein [Brassica oleracea] (GB:ABD64996.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 19319496    to: 19321963    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version